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1. Full Text Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
by Shabalin, Andrey A
Bioinformatics, ISSN 1367-4803, 05/2012, Volume 28, Issue 10, pp. 1353 - 1358
Statistics & Probability | Biochemistry & Molecular Biology | Physical Sciences | Computer Science, Interdisciplinary Applications | Life Sciences & Biomedicine | Technology | Biochemical Research Methods | Computer Science | Mathematics | Biotechnology & Applied Microbiology | Science & Technology | Mathematical & Computational Biology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | General aspects | Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) | Gene Expression | Algorithms | Cystic Fibrosis - genetics | Humans | Genotype | Models, Genetic | Polymorphism, Single Nucleotide | Software | Quantitative Trait Loci | Index Medicus | Original Papers
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2. Full Text SEQUENCE MOTIF AND PROTEIN DOMAIN ENRICHMENT ANALYSIS OF PSYCHIATRIC GWAS FINDINGS
by McClay, Joseph and Shabalin, Andrey
European neuropsychopharmacology, ISSN 0924-977X, 2019, Volume 29, p. S943
Proteins | Analysis | Genes | Genomics | Genetic transcription | Nucleotide sequencing | Mental illness | DNA sequencing
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3. Full Text Heritability and genomics of gene expression in peripheral blood
by Wright, F.A and Sullivan, P.F and Brooks, A.I and Zou, F and Sun, W and Xia, K and Madar, V and Jansen, R and Chung, W and Zhou, Y.H and Abdellaoui, A and Batista, S and Butler, C and Chen, G and Chen, T.H and D’Ambrosio, D and Gallins, P and Ha, M.J and Hottenga, J.J and Huang, S and Kattenberg, V.M and Kochar, J and Middeldorp, C.M and Qu, A and Shabalin, A and Tischfield, J and Todd, L and Tzeng, J.Y and Grootheest, G and Vink, J.M and Wang, Q and Wang, W and Willemsen, G and Smit, J.H and de Geus, E.J.C and Yin, Z and Penninx, B.W.J.H and Boomsma, D.I
Nature genetics, ISSN 1061-4036, 2014, Volume 46, Issue 5, pp. 430 - 437
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Likelihood Functions | Netherlands | Gene Expression Regulation - genetics | Humans | Inheritance Patterns - genetics | Polymorphism, Single Nucleotide - genetics | Genotype | Gene Expression Profiling | Blood - metabolism | Quantitative Trait Loci - genetics | Genomics | Genetic research | Heritability | Genetic aspects | Research | Gene expression | Twins | Identification and classification | Blood | Studies | Index Medicus | expression quantitative trait loci | peripheral blood | eQTL | twin study | gene expression | heritability | Medicin och hälsovetenskap
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4. Full Text Reconstruction of a low-rank matrix in the presence of Gaussian noise
by Shabalin, Andrey A and Nobel, Andrew B
Journal of multivariate analysis, ISSN 0047-259X, 07/2013, Volume 118, pp. 67 - 76
Eigenvector distribution | Random matrix theory | Matrix reconstruction | HDLSS | Eigenvalue distribution | Principal component analysis | Statistics & Probability | Physical Sciences | Mathematics | Science & Technology | Studies | Matrix | Estimating techniques | Normal distribution | Noise control
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5. Full Text Epigenetic Aging in Major Depressive Disorder
by Han, Laura K.M and Aghajani, Moji and Clark, Shaunna L and Chan, Robin F and Hattab, Mohammad W and Shabalin, Andrey A and Zhao, Min and Kumar, Gaurav and Xie, Lin Ying and Jansen, Rick and Milaneschi, Yuri and Dean, Brian and Aberg, Karolina A and van den Oord, Edwin J.C.G and Penninx, Brenda W.J.H
The American journal of psychiatry, ISSN 0002-953X, 08/2018, Volume 175, Issue 8, pp. 774 - 782
Psychiatry and Mental health | d_article_not_yet_freely_accessible | Life Sciences & Biomedicine | Psychiatry | Science & Technology | Life Style | Humans | Depressive Disorder, Major - complications | Male | DNA Methylation - genetics | Case-Control Studies | Brain - metabolism | Netherlands | Aging - genetics | Depressive Disorder, Major - genetics | Adult | Female | Adult Survivors of Child Adverse Events - psychology | Health Status | Longitudinal Studies | Epigenetics | Aging | DNA methylation | Mental depression | Risk factors | Blood tests | Index Medicus | Abridged Index Medicus
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6. Full Text Merging two gene-expression studies via cross-platform normalization
by Shabalin, Andrey A and Tjelmeland, Håkon and Fan, Cheng and Perou, Charles M and Nobel, Andrew B
Bioinformatics, ISSN 1367-4803, 5/2008, Volume 24, Issue 9, pp. 1154 - 1160
Statistics & Probability | Biochemistry & Molecular Biology | Physical Sciences | Computer Science, Interdisciplinary Applications | Life Sciences & Biomedicine | Technology | Biochemical Research Methods | Computer Science | Mathematics | Biotechnology & Applied Microbiology | Science & Technology | Mathematical & Computational Biology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | General aspects | Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) | Data Interpretation, Statistical | Multigene Family - physiology | Algorithms | Oligonucleotide Array Sequence Analysis - standards | Oligonucleotide Array Sequence Analysis - methods | Gene Expression Profiling - methods | Reference Values | Gene Expression Profiling - standards | Index Medicus
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7. Full Text High density methylation QTL analysis in human blood via next-generation sequencing of the methylated genomic DNA fraction
by McClay, Joseph L and Shabalin, Andrey A and Dozmorov, Mikhail G and Adkins, Daniel E and Kumar, Gaurav and Nerella, Srilaxmi and Clark, Shaunna L and Bergen, Sarah E and Hultman, Christina M and Magnusson, Patrik K.E and Sullivan, Patrick F and Aberg, Karolina A and van den Oord, Edwin J.C.G and Swedish Schizophrenia Consortium
Genome Biology, ISSN 1474-7596, 12/2015, Volume 16, Issue 1, pp. 291 - 291
Quantitative trait loci | DNA methylation | Chromatin states | GWAS | Next-generation sequencing | Single nucleotide polymorphism | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | DNA Methylation | Humans | CpG Islands | Female | Male | High-Throughput Nucleotide Sequencing | Polymorphism, Single Nucleotide | Genome, Human | Quantitative Trait Loci | Blood - metabolism | Sequence Analysis, DNA | Chromatin | Blood cells | Genomes | Single-nucleotide polymorphism | Gene expression | Studies | Enhancers | Stem cells | Gene mapping | Chromosomes | Bioinformatics | Deoxyribonucleic acid--DNA | DNA sequencing | CpG islands | Index Medicus | next-generation sequencing | single nucleotide polymorphism | chromatin states | Research | quantitative trait loci | Medicin och hälsovetenskap
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8. Full Text 69 GENOME-WIDE ANALYSIS OF SUICIDE DEATH AND POLYGENIC PREDICTION OF PREMORBID CLINICAL DIAGNOSES
by Docherty, Anna and Shabalin, Andrey and DiBlasi, Emily and Bacanu, Silviu and Coon, Hilary
European neuropsychopharmacology, ISSN 0924-977X, 10/2019, Volume 29, pp. S98 - S98
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9. Full Text Methylome-wide association findings for major depressive disorder overlap in blood and brain and replicate in independent brain samples
by Aberg, Karolina A and Dean, Brian and Shabalin, Aney A and Chan, Robin F and Han, Laura K. M and Zhao, Min and van Grootheest, Gerard and Xie, Lin Y and Milaneschi, Yuri and Clark, Shaunna L and Turecki, Gustavo and Penninx, Brenda W. J. H and van den Oord, Edwin J. C. G
Molecular psychiatry, ISSN 1359-4184, 06/2020, Volume 25, Issue 6, pp. 1344 - 1354
Molecular Biology | Psychiatry and Mental health | Cellular and Molecular Neuroscience | Biochemistry & Molecular Biology | Neurosciences | Neurosciences & Neurology | Life Sciences & Biomedicine | Psychiatry | Science & Technology | Medical research | Neurons | Genomics | Analysis | Medicine, Experimental | Development and progression | Methylation | Major depressive disorder | Chromatin | Transcription | Exons | Shores | Genomes | Mental depression | Chromosome 2 | Blood | Brodmann's area | Enhancers | Etiology | Autopsy | Cortex (frontal) | DNA methylation | Polarity | CpG islands | Index Medicus
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10. Full Text Klebsazolicin inhibits 70S ribosome by obstructing the peptide exit tunnel
by Metelev, Mikhail and Osterman, Ilya A and Ghilarov, Dmitry and Khabibullina, Nelli F and Yakimov, Alexander and Shabalin, Konstantin and Utkina, Irina and Travin, Dmitry Y and Komarova, Ekaterina S and Serebryakova, Marina and Artamonova, Tatyana and Khodorkovskii, Mikhail and Konevega, Andrey L and Sergiev, Petr V and Severinov, Konstantin and Polikanov, Yury S and Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Nature chemical biology, ISSN 1552-4450, 10/2017, Volume 13, Issue 10, pp. 1129 - 1136
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Peptides - chemistry | Ribosomes - chemistry | Anti-Bacterial Agents - metabolism | Peptides - pharmacology | Peptides - metabolism | Anti-Bacterial Agents - chemistry | Cloning, Molecular | Protein Engineering | Ribosomes - drug effects | Anti-Bacterial Agents - pharmacology | Klebsiella pneumoniae - metabolism | Binding Sites - drug effects | Klebsiella pneumoniae - chemistry | Klebsiella | Peptides | Genomics | Ribosomes | Fragments | Blocking | Genomes | Molecules | Microorganisms | Metabolites | Antibiotics | Bioactive compounds | Elongated structure | Translation elongation | Post-translation | Scaffolds | Binding sites | Conformation | Structural analysis | Index Medicus | BASIC BIOLOGICAL SCIENCES
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