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1. Full Text The microbiome of New World vultures
by Roggenbuck, Michael and Bærholm Schnell, Ida and Blom, Nikolaj and Bælum, Jacob and Bertelsen, Mads Frost and Pontén, Thomas Sicheritz and Sørensen, Søren Johannes and Gilbert, M. Thomas P and Graves, Gary R and Hansen, Lars H
Nature communications, ISSN 2041-1723, 2014, Volume 5, Issue 1, pp. 5498 - 5498
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Feces - microbiology | Metagenomics | Bacteria - isolation & purification | Microbiota | Animals | Skin - microbiology | Ecosystem | Bacteria - classification | Gastrointestinal Tract - microbiology | Phylogeny | Bacteria - genetics | Birds - microbiology | Index Medicus
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2. Full Text Ancient human genome sequence of an extinct Palaeo-Eskimo
by Li, Yingrui and Gledhill, Andrew and Higham, Thomas F. G and Gilbert, M. Thomas P and Brunak, Søren and Kivisild, Toomas and Ramsey, Christopher Bronk and Campos, Paula F and Osipova, Ludmila P and Zhao, Jing and Zhang, Xiuqing and Nielsen, Rasmus and Meldgaard, Morten and Orlando, Ludovic and Andreasen, Claus and Pedersen, Jakob Skou and Krogh, Anders and Kamp, Hanne Munkholm and Gupta, Ramneek and Fedorova, Sardana A and Moltke, Ida and Metspalu, Ene and Wang, Yong and Hansen, Thomas v. O and Lindgreen, Stinus and Wilson, Andrew S and Wang, Jun and Nielsen, Kasper and Bendixen, Christian and Villems, Richard and Albrechtsen, Anders and Binladen, Jonas and Crawford, Michael H and Willerslev, Eske and Li, Zhuo and Pierre, Tracey L and Sicheritz-Pontén, Thomas and Tommerup, Niels and Bak, Mads and Bunce, Michael and Grønnow, Bjarne and Nielsen, Finn C and Rasmussen, Morten and Bertalan, Marcelo and Raghavan, Maanasa and Tridico, Silvana and Chen, Minfeng and Kristiansen, Karsten and Lorenzen, Eline D and Guo, Xiaosen and Zhang, Hao and Metspalu, Mait
Nature (London), ISSN 0028-0836, 02/2010, Volume 463, Issue 7282, pp. 757 - 762
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Hair | Genetics, Population | History, Ancient | Emigration and Immigration - history | Genomics | Humans | Genotype | Male | Inuits - genetics | Extinction, Biological | Phylogeny | Sequence Analysis, DNA | Genome, Human - genetics | Siberia - ethnology | Phenotype | Cryopreservation | Polymorphism, Single Nucleotide - genetics | Greenland | Human beings | DNA | Analysis | Genetic aspects | Research | Man | Endangered & extinct species | Population | Mitochondrial DNA | Mass spectrometry | Deoxyribonucleic acid--DNA | Contamination | Index Medicus
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3. Full Text Single‐tube library preparation for degraded DNA
by Carøe, Christian and Gopalakrishnan, Shyam and Vinner, Lasse and Mak, Sarah S. T and Sinding, Mikkel Holger S and Samaniego, José A and Wales, Nathan and Sicheritz‐Pontén, Thomas and Gilbert, M. Thomas P and Johnston, Susan
Methods in ecology and evolution, ISSN 2041-210X, 02/2018, Volume 9, Issue 2, pp. 410 - 419
illumina sequencing | museomics | degraded DNA | library preparation | paleogenomics | Environmental Sciences & Ecology | Ecology | Life Sciences & Biomedicine | Science & Technology | Costs | Purification | Downstream effects | Biological evolution | Genomes | Gene sequencing | Chemical damage | Studies | Degradation | Libraries | Autoimmune diseases | Deoxyribonucleic acid--DNA | DNA sequencing
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4. Full Text Norgal: Extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data
by Al-Nakeeb, Kosai and Petersen, Thomas Nordahl and Sicheritz-Pontén, Thomas
BMC bioinformatics, ISSN 1471-2105, 11/2017, Volume 18, Issue 1, pp. 510 - 510
Mitochondrial dna | Next-generation sequencing | De novo assembly | K-mer | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Biochemical Research Methods | Science & Technology | Mathematical & Computational Biology | Usage | Chloroplasts | Mitochondrial DNA | Nucleotide sequencing | Nucleotides | Research | DNA sequencing | Index Medicus
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5. Full Text Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
by Mette V. Larsen and Salvatore Cosentino and Simon Rasmussen and Carsten Friis and Henrik Hasman and Rasmus Lykke Marvig and Lars Jelsbak and Thomas Sicheritz-Pontén and David W. Ussery and Frank M. Aarestrup and Ole Lund
Journal of Clinical Microbiology, ISSN 0095-1137, 04/2012, Volume 50, Issue 4, pp. 1355 - 1361
Life Sciences & Biomedicine | Microbiology | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Miscellaneous | Bacteriology | Genes, Bacterial | Genome, Bacterial | Bacterial Typing Techniques | Bacteria - classification | Databases, Genetic | Contig Mapping | High-Throughput Nucleotide Sequencing | Multilocus Sequence Typing | Bacteria - genetics | Index Medicus
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6. Full Text Upper palaeolithic Siberian genome reveals dual ancestry of native Americans
by Raghavan, Maanasa and Skoglund, Pontus and Graf, Kelly E and Metspalu, Mait and Albrechtsen, Anders and Moltke, Ida and Rasmussen, Simon and Stafford Jr, Thomas W and Orlando, Ludovic and Metspalu, Ene and Karmin, Monika and Tambets, Kristiina and Rootsi, Siiri and Mägi, Reedik and Campos, Paula F and Balanovska, Elena and Balanovsky, Oleg and Khusnutdinova, Elza and Litvinov, Sergey and Osipova, Ludmila P and Fedorova, Sardana A and Voevoda, Mikhail I and Degiorgio, Michael and Sicheritz-Ponten, Thomas and Brunak, Søren and Demeshchenko, Svetlana and Kivisild, Toomas and Villems, Richard and Nielsen, Rasmus and Jakobsson, Mattias and Willerslev, Eske
Nature (London), ISSN 0028-0836, 2014, Volume 505, Issue 7481, pp. 87 - 91
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Gene Flow - genetics | European Continental Ancestry Group - genetics | Indians, North American - classification | Humans | Phylogeography | Asia - ethnology | Asian Continental Ancestry Group - genetics | Genome, Mitochondrial - genetics | Male | Phylogeny | Genome, Human - genetics | Siberia - ethnology | Indians, North American - ethnology | Chromosomes, Human, Y - genetics | Haplotypes - genetics | Animals | DNA, Mitochondrial - genetics | Indians, North American - genetics | Skeleton | Emigration and Immigration | Evolutionary genetics | Genomes | Nucleotide sequencing | Native Americans | Single nucleotide polymorphisms | Identification and classification | Methods | Natural history | DNA sequencing | Evolution | Mitochondrial DNA | Genomics | Native North Americans | Index Medicus
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7. Full Text Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging
by Zepeda Mendoza, Marie Lisandra and Roggenbuck, Michael and Manzano Vargas, Karla and Hansen, Lars Hestbjerg and Brunak, Søren and Gilbert, M.Thomas P and Sicheritz-Pontén, Thomas
Acta veterinaria scandinavica, ISSN 0044-605X, 10/2018, Volume 60, Issue 1, pp. 61 - 61
Colonization resistance | Metagenomics | Pathogens | Diet specialization | Scavenging | Vulture | Microbiome | Life Sciences & Biomedicine | Veterinary Sciences | Science & Technology | Animals, Wild - microbiology | Bacteria - isolation & purification | Falconiformes - physiology | Microbiota | Animals | Skin - microbiology | Falconiformes - microbiology | Adaptation, Biological | Bacteria - classification | Gastrointestinal Tract - microbiology | Feeding Behavior | Bacteria - genetics | Usage | Medicine, Primitive | Research | Microbiota (Symbiotic organisms) | Folk medicine | Genomics | Index Medicus
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8. Full Text Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira
by Palomo, Alejandro and Pedersen, Anders G and Fowler, S. Jane and Dechesne, Arnaud and Sicheritz-Pontén, Thomas and Smets, Barth F
The ISME Journal, ISSN 1751-7362, 06/2018, Volume 12, Issue 7, pp. 1779 - 1793
Environmental Sciences & Ecology | Ecology | Life Sciences & Biomedicine | Microbiology | Science & Technology | Betaproteobacteria - isolation & purification | Betaproteobacteria - classification | Oxidation-Reduction | Ammonia - metabolism | Genomics | Betaproteobacteria - metabolism | Nitrites - metabolism | Archaea - isolation & purification | Archaea - classification | Betaproteobacteria - genetics | Nitrates - metabolism | Archaea - metabolism | Nitrification | Archaea - genetics | Evolution, Molecular | Ammonium | Genomic analysis | Nitrogen sources | Genes | Biological evolution | Archaea | Homeostasis | Operons | Genomes | Urea | Ammonia | Reduction | Nitric oxide | Evolution | Oxidation | Index Medicus
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9. Full Text Meta-genomic analysis of toilet waste from long distance flights; A step towards global surveillance of infectious diseases and antimicrobial resistance
by Petersen, Thomas Nordahl and Rasmussen, Simon and Hasman, Henrik and Carøe, Christian and Bælum, Jacob and Charlotte Schultz, Anna and Bergmark, Lasse and Svendsen, Christina A and Lund, Ole and Sicheritz-Pontén, Thomas and Aarestrup, Frank M
Scientific reports, ISSN 2045-2322, 07/2015, Volume 5, Issue 1, pp. 11444 - 11444
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Communicable Diseases - pathology | Genomics | Humans | Clostridium difficile - genetics | Salmonella enterica - genetics | DNA, Bacterial - chemistry | Clostridium difficile - isolation & purification | Phylogeny | Waste Water - microbiology | Communicable Diseases - virology | Bacteria - classification | Salmonella enterica - isolation & purification | Drug Resistance, Bacterial - drug effects | Drug Resistance, Bacterial - genetics | RNA, Viral - isolation & purification | Real-Time Polymerase Chain Reaction | Norovirus - genetics | Waste Water - virology | DNA, Bacterial - isolation & purification | Norovirus - isolation & purification | Bacteria - genetics | Sequence Analysis, DNA | Bacteria - isolation & purification | RNA, Viral - chemistry | Communicable Diseases - microbiology | High-Throughput Nucleotide Sequencing | Aircraft | Cluster Analysis | Epidemics | Infectious diseases | Genomic analysis | Disease transmission | Antimicrobial agents | Abundance | Antimicrobial resistance | Drug resistance | Index Medicus
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