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Statistical Applications in Genetics and Molecular Biology, ISSN 1544-6115, 02/2004, Volume 3, Issue 1, pp. 3 - 25
Abstract The problem of identifying differentially expressed genes in designed microarray experiments is considered. Lonnstedt and Speed (2002) derived an... 
hyperparameters | differential expression | empirical Bayes | linear models | microarrays | Empirical Bayes | Hyperparameters | Differential expression | Microarrays | Linear models
Journal Article
Bioinformatics, ISSN 1367-4803, 04/2014, Volume 30, Issue 7, pp. 923 - 930
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 05/2019, Volume 47, Issue 8, pp. e47 - e47
Abstract We present Rsubread, a Bioconductor software package that provides high-performance alignment and read counting functions for RNA-seq reads. Rsubread... 
SEQ DATA | SPLICE JUNCTIONS | ALIGNER | BIOCHEMISTRY & MOLECULAR BIOLOGY | Methods Online
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 05/2013, Volume 41, Issue 10, pp. e108 - e108
Read alignment is an ongoing challenge for the analysis of data from sequencing technologies. This article proposes an elegantly simple multi-seed strategy,... 
ALIGNMENT | SEARCH | BIOCHEMISTRY & MOLECULAR BIOLOGY | SEQUENCE | ALGORITHM | NORMALIZATION | DIFFERENTIAL EXPRESSION ANALYSIS | GENOME | Sequence Alignment - methods | High-Throughput Nucleotide Sequencing | Software | Exons | Genomics | INDEL Mutation | Index Medicus | Methods Online
Journal Article
Cell Death and Differentiation, ISSN 1350-9047, 10/2017, Volume 24, Issue 10, pp. 1821 - 1822
Journal Article
Circulation, ISSN 0009-7322, 11/2016, Volume 134, Issue 19
William Y Shi, Annie Xin, Gordon K Smyth, Yifang Hu, Slavica Praporski, Anne Shipp, Robert G Weintraub and Igor E Konstantinov 
Heart | Usage | Biopsy | Transplantation | Research | Nucleotide sequencing | DNA sequencing
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 09/2012, Volume 40, Issue 17, pp. e133 - e133
Journal Article
Cancer Research, ISSN 0008-5472, 07/2017, Volume 77, Issue 13 Supplement, pp. 5024 - 5024
Journal Article
Circulation, ISSN 0009-7322, 11/2016, Volume 134, Issue Suppl_1 Suppl 1, pp. A18175 - A18175
IntroductionEndomyocardial biopsy (EMB) remains the gold standard for detecting rejection after heart transplantation. EMB is costly, invasive and,... 
Journal Article
R Journal, ISSN 2073-4859, 2016, Volume 8, Issue 1, pp. 339 - 351
The inverse Gaussian distribution (IGD) is a well known and often used probability distribution for which fully reliable numerical algorithms have not been... 
STATISTICS & PROBABILITY | GENERALIZED LINEAR-MODELS | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Journal Article
Statistical Applications in Genetics and Molecular Biology, ISSN 1544-6115, 2010, Volume 9, Issue 1, pp. Article39 - Article39
Permutation tests are amongst the most commonly used statistical tools in modern genomic research, a process by which p-values are attached to a test statistic... 
permutation test | microarray | P-values | Monte Carlo test | multiple testing | TESTS | BIOCHEMISTRY & MOLECULAR BIOLOGY | STATISTICS & PROBABILITY | p-values | Probability | Gene Expression Profiling - methods | Models, Statistical | Genomics - methods | Index Medicus | Statistics - Applications
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 04/2015, Volume 43, Issue 7, pp. e47 - e47
limma is an R/Bioconductor software package that provides an integrated solution for analysing data from gene expression experiments. It contains rich features... 
FALSE DISCOVERY RATE | 2-CHANNEL MICROARRAYS | SEQ DATA | TRUE NULL HYPOTHESES | BIOCHEMISTRY & MOLECULAR BIOLOGY | BACKGROUND CORRECTION | GRAPHICAL USER-INTERFACE | NORMALIZATION | GENE ONTOLOGY | PROPORTION | BIOCONDUCTOR | Software | Sequence Analysis, RNA | Oligonucleotide Array Sequence Analysis | Gene Expression Regulation | Index Medicus | Methods Online
Journal Article