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1. Full Text Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations
by Lang, Gregory I and Rice, Daniel P and Hickman, Mark J and Sodergren, Erica and Weinstock, George M and Botstein, David and Desai, Michael M
Nature (London), ISSN 0028-0836, 2013, Volume 500, Issue 7464, pp. 571 - 574
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Clone Cells - cytology | Saccharomyces cerevisiae - genetics | Saccharomyces cerevisiae - classification | Mutation - genetics | Clone Cells - metabolism | Saccharomyces cerevisiae - cytology | Cell Nucleus - genetics | Stochastic Processes | Time Factors | Adaptation, Physiological - genetics | Genes, Fungal - genetics | Saccharomyces cerevisiae - growth & development | Evolution, Molecular | Genetic aspects | Research | Adaptation (Biology) | Yeast fungi | Genomics | Mutation (Biology) | Hitchhiking | Yeast | Cloning | Evolution | Population | Genomes | Mutation | Index Medicus
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2. Full Text Structure, function and diversity of the healthy human microbiome
by Creasy, Heather H and Fitzgerald, Michael G and Fulton, Robert S and Giglio, Michelle G and Magrini, Vincent and Martin, John C and Muzny, Donna M and Sodergren, Erica J and Worley, Kim C and Wortman, Jennifer R and Alm, Eric J and Arachchi, Harindra M and Armitage, Gary and Bhonagiri, Veena and Blaser, Martin J and Bonazzi, Vivien and Buck, Gregory A and Cantarel, Brandi L and Chen, I-Min A and Chen, Lei and Clemente, Jose C and Clifton, Sandra W and Crabtree, Jonathan and Cutting, Mary A and Davis, Catherine C and Desantis, Todd Z and Deal, Carolyn and Delehaunty, Kimberley D and Ding, Yan and Dooling, David J and Dugan, Shannon P and Michael Dunne, Wm and Scott Durkin, A and Edgar, Robert C and Farrell, Ruth M and Faust, Karoline and Fodor, Anthony A and Forney, Larry J and Di Francesco, Valentina and Friedman, Jonathan and Fronick, Catrina C and Fulton, Lucinda L and Gao, Hongyu and Garcia, Nathalia and Goll, Johannes and Gonzalez, Antonio and Kinder Haake, Susan and Haas, Brian J and Hoffmann, Diane E and Huse, Susan M and Katancik, James A and Keitel, Wendy A and Kong, Heidi H and Koren, Sergey and La Rosa, Patricio S and Lemon, Katherine P and Ley, Ruth E and Liu, Bo and Madden, Tessa and Mannon, Peter J and Markowitz, Victor M and Mavromatis, Konstantinos and McCorrison, Jamison M and McInnes, Pamela and Mehta, Teena and Minx, Patrick J and Nusbaum, Chad and Oglaughlin, Michelle and Palaniappan, Krishna and Peterson, Jane and Proctor, Lita M and Reid, Jeffrey G and Rho, Mina and Rivera, Maria C and Rodriguez-Mueller, Beltran and Rogers, Yu-Hui and Ross, Matthew C and Sanka, Ravi K and Segre, Julia A and Sharp, Richard R and Sharpton, Thomas J and Shenoy, Narmada and Sheth, Nihar U and Sommer, Daniel D and Thiagarajan, Mathangi and Tomlinson, Chad M and Walker, Jason and Ward, Doyle V and Wellington, Christopher and White, James R and Wilczek-Boney, Katarzyna and Wu, Yuanqing and Youmans, Bonnie P and Zhang, Lan and Zhu, Yiming and Birren, Bruce W and Highlander, Sarah K and Methé, Barbara A and Nelson, Karen E and White, Owen and Human Microbiome Project Consortiu and Human Microbiome Project Consortium and The Human Microbiome Project Consortium and Joint Genome Institute (JGI)
Nature (London), ISSN 0028-0836, 06/2012, Volume 486, Issue 7402, pp. 207 - 214
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Morphology, structure, chemical composition | Microbiology | Bacteriology | Metagenomics | Health | Humans | Male | Biodiversity | Bacteria - genetics | Young Adult | Phenotype | Ecosystem | Adolescent | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Adult | Female | Metabolic Networks and Pathways - physiology | Metagenome | Microbiota (Symbiotic organisms) | Research | Biological diversity | Disease | Habitats | Taxonomy | Data processing | Skin | Life sciences | Genomes | Index Medicus
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3. Full Text Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis
by Johnson, Jethro S and Spakowicz, Daniel J and Hong, Bo-Young and Petersen, Lauren M and Demkowicz, Patrick and Chen, Lei and Leopold, Shana R and Hanson, Blake M and Agresta, Hanako O and Gerstein, Mark and Sodergren, Erica and Weinstock, George M
Nature communications, ISSN 2041-1723, 12/2019, Volume 10, Issue 1, pp. 5029 - 11
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Humans | Computational Biology | Gene Dosage | Phylogeny | Bacteria - genetics | Sequence Analysis, DNA | Polymorphism, Genetic | Genetic Variation | Feces - microbiology | Bacteria - isolation & purification | DNA, Bacterial - genetics | Microbiota - genetics | Base Sequence | Computer Simulation | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Bacteriological Techniques | High-Throughput Nucleotide Sequencing - methods | Platforms | Strain analysis | rRNA 16S | Bacterial analysis | Next-generation sequencing | Taxonomy | Microbiomes | Nucleotides | Species | Gene sequencing | Index Medicus
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4. Full Text A framework for human microbiome research
by Giglio, Michelle G and Huttenhower, Curtis and Gevers, Dirk and Petrosino, Joseph F and Lobos, Elizabeth A and Madupu, Ramana and Martin, John C and Mitreva, Makedonka and Versalovic, James and Wollam, Aye M and Abolude, Olukemi O and Alvarado, Lucia and Appelbaum, Elizabeth and Armitage, Gary and Arze, Cesar A and Baker, Carl C and Belachew, Tsegahiwot and Bhonagiri, Veena and Bihan, Monika and Blaser, Martin J and Bloom, Toby and Brooks, Paul and Buck, Gregory A and Busam, Dana A and Campbell, Joseph L and Chain, Patrick S and Chu, Ken and Cutting, Mary A and Desantis, Todd Z and Deal, Carolyn and Dewhirst, Floyd E and Dooling, David J and Michael Dunne, W and Farmer, Candace N and Feldgarden, Michael and Felix, Victor M and Fodor, Anthony A and Forney, Larry and Foster, Leslie and Di Francesco, Valentina and Giannoukos, Georgia and Goldberg, Jonathan M and Harris, Emily L and Hepburn, Theresa A and Herter, Brandi and Holder, Michael E and Huang, Katherine H and Jordan, Catherine and Katancik, James A and King, Nicholas B and Kong, Heidi H and Koren, Sergey and La Rosa, Patricio S and Lennon, Niall and Lo, Chien-Chi and Lozupone, Catherine A and Mannon, Peter J and McEwen, Jean and McGuire, Amy L and Mehta, Teena and Miller, Jason R and Newsham, Irene and Nusbaum, Chad and Pagani, Ioanna and Palaniappan, Krishna and Podar, Mircea and Pohl, Craig and Pollard, Katherine S and Priest, Margaret E and Proctor, Lita M and Riehle, Kevin P and Rodriguez-Mueller, Beltran and Rogers, Yu-Hui and Russ, Carsten and Sankar, Pamela and Schloss, Jeffery A and Schloss, Patrick D and Scholz, Matthew and Segre, Julia A and Sharpton, Thomas J and Shenoy, Narmada and Singh, Indresh and Sykes, Sean M and Torralba, Manolito and Treangen, Todd J and Truty, Rebecca M and Walker, Jason and Ward, Doyle V and Warren, Wesley and Wellington, Christopher and Wetterstrand, Kris A and Wilczek-Boney, Katarzyna and Wylie, Kristine M and Yandava, Chandri and Ye, Liang and Youmans, Bonnie P and Zhang, Lan and Zhou, Yanjiao and Zhu, Yiming and Zucker, Jeremy D and Human Microbiome Project Consortiu and Human Microbiome Project Consortium and The Human Microbiome Project Consortium and Joint Genome Institute (JGI)
Nature (London), ISSN 0028-0836, 06/2012, Volume 486, Issue 7402, pp. 215 - 221
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Morphology, structure, chemical composition | Microbiology | Bacteriology | Young Adult | Reference Standards | Humans | Adolescent | Metagenomics - methods | RNA, Ribosomal, 16S - genetics | Adult | Female | Male | Statistics as Topic | Bacteria - genetics | Metagenome | Genetic research | Microbiological research | Genomes | Research | Microbiota (Symbiotic organisms) | Studies | Medicine | Publications | Taxonomy | Genomics | Data processing | Manuscripts | Index Medicus
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5. Full Text Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment
by Nobel, Yael R and Cox, Laura M and Kirigin, Francis F and Bokulich, Nicholas A and Yamanishi, Shingo and Teitler, Isabel and Chung, Jennifer and Sohn, Jiho and Barber, Cecily M and Goldfarb, David S and Raju, Kartik and Abubucker, Sahar and Zhou, Yanjiao and Ruiz, Victoria E and Li, Huilin and Mitreva, Makedonka and Alekseyenko, Alexander V and Weinstock, George M and Sodergren, Erica and Blaser, Martin J
Nature communications, ISSN 2041-1723, 06/2015, Volume 6, Issue 1, pp. 7486 - 7486
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Metagenomics | Drug Administration Schedule | Liver - metabolism | Mice, Inbred C57BL | Transcriptome | Male | Tylosin - pharmacology | Gene Expression Regulation - drug effects | Tylosin - administration & dosage | Animals | Feces - chemistry | Liver - drug effects | Amoxicillin - pharmacology | Aging | Female | Amoxicillin - administration & dosage | Anti-Bacterial Agents - pharmacology | Mice | Drug Therapy, Combination | Energy Metabolism - physiology | Anti-Bacterial Agents - administration & dosage | Index Medicus
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6. Full Text Enteric defensins are essential regulators of intestinal microbial ecology
by Salzman, Nita H and Hung, Kuiechun and Haribhai, Dipica and Chu, Hiutung and Karlsson-Sjoeberg, Jenny and Amir, Elad and Teggatz, Paul and Barman, Melissa and Hayward, Michael and Eastwood, Daniel and Stoel, Maaike and Zhou, Yanjiao and Sodergren, Erica and Weinstock, George M and Bevins, Charles L and Williams, Calvin B and Bos, Nicolaas A
Nature immunology, ISSN 1529-2908, 01/2010, Volume 11, Issue 1, pp. 76 - U1
IMMUNE-RESPONSE | DISTAL GUT MICROBIOME | PANETH CELL | MOUSE | DISEASE | MICE | COLONIZATION | ANTIMICROBIAL PEPTIDES | UMCG Approved | SEGMENTED FILAMENTOUS BACTERIA | INNATE IMMUNITY | Life Sciences & Biomedicine | Immunology | Science & Technology | Humans | Interleukin-17 - immunology | Male | Intestines - metabolism | Colony Count, Microbial | Phylogeny | Intestines - immunology | alpha-Defensins - genetics | Bacteria - growth & development | Flow Cytometry | Matrix Metalloproteinase 7 - metabolism | T-Lymphocytes, Helper-Inducer - immunology | T-Lymphocytes, Helper-Inducer - cytology | Bacteria - classification | Female | alpha-Defensins - metabolism | Intestine, Small - immunology | T-Lymphocytes, Helper-Inducer - metabolism | Intestine, Small - microbiology | In Situ Hybridization, Fluorescence | Mice, Transgenic | Ecology | Mice, Inbred Strains | Bacteria - genetics | Mice, Knockout | Interleukin-17 - metabolism | Matrix Metalloproteinase 7 - genetics | Animals | Intestines - microbiology | alpha-Defensins - immunology | RNA, Ribosomal, 16S - genetics | Mice | Intestine, Small - metabolism | Metagenome | Microscopy, Fluorescence | Index Medicus | Medicin och hälsovetenskap
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7. Full Text Propionibacterium acnes Strain Populations in the Human Skin Microbiome Associated with Acne
by Fitz-Gibbon, Sorel and Tomida, Shuta and Chiu, Bor-Han and Nguyen, Lin and Du, Christine and Liu, Minghsun and Elashoff, David and Erfe, Marie C and Loncaric, Anya and Kim, Jenny and Modlin, Robert L and Miller, Jeff F and Sodergren, Erica and Craft, Noah and Weinstock, George M and Li, Huiying
Journal of investigative dermatology, ISSN 0022-202X, 09/2013, Volume 133, Issue 9, pp. 2152 - 2160
Life Sciences & Biomedicine | Dermatology | Science & Technology | Skin - microbiology | Humans | Propionibacterium acnes - genetics | Male | Sebaceous Glands - microbiology | Propionibacterium acnes - classification | RNA, Ribosomal - genetics | Ribotyping - methods | Young Adult | DNA, Bacterial - genetics | Gram-Positive Bacterial Infections - microbiology | Propionibacterium acnes - isolation & purification | RNA, Bacterial - genetics | Adult | Female | Genomics - methods | Metagenome | Acne Vulgaris - microbiology | Index Medicus
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