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microbiology (115) 115
phylogeny (65) 65
soda lakes (61) 61
index medicus (59) 59
molecular sequence data (43) 43
rna, ribosomal, 16s - genetics (43) 43
oxidation-reduction (40) 40
hydrogen-ion concentration (38) 38
bacteria (36) 36
sp-nov (35) 35
sulfur - metabolism (33) 33
diversity (32) 32
sequence analysis, dna (32) 32
haloalkaliphilic (31) 31
dna, bacterial - genetics (29) 29
salinity (28) 28
sulfur-oxidizing bacteria (28) 28
geologic sediments - microbiology (24) 24
lakes (23) 23
oxidation (23) 23
gammaproteobacteria - classification (21) 21
water microbiology (21) 21
lakes - microbiology (20) 20
research (20) 20
fresh water - microbiology (19) 19
biochemistry & molecular biology (18) 18
gen. nov (18) 18
sulfur (18) 18
gammaproteobacteria - genetics (17) 17
sediments (17) 17
thiosulfate (17) 17
analysis (16) 16
microbial diversity (16) 16
russia (16) 16
biotechnology (15) 15
gammaproteobacteria - metabolism (15) 15
genetic aspects (15) 15
growth (15) 15
soda lake (15) 15
genomics (14) 14
thiocyanate (14) 14
mono lake (13) 13
physiological aspects (13) 13
california (12) 12
dna, ribosomal - genetics (12) 12
gammaproteobacteria - isolation & purification (12) 12
microorganisms (12) 12
sodium chloride - metabolism (12) 12
sp nov (12) 12
sulfates (12) 12
sulfide (12) 12
sulfur compounds (12) 12
thioalkalivibrio (12) 12
anaerobiosis (11) 11
base composition (11) 11
biotechnology & applied microbiology (11) 11
denitrification (11) 11
dna, bacterial - chemistry (11) 11
enzymes (11) 11
life sciences (11) 11
thiosulfates - metabolism (11) 11
deoxyribonucleic acid (10) 10
dna, ribosomal - chemistry (10) 10
genetics & heredity (10) 10
methane - metabolism (10) 10
ribulose-bisphosphate carboxylase - genetics (10) 10
16s ribosomal-rna (9) 9
aerobiosis (9) 9
bioreactors - microbiology (9) 9
chemoautotrophic growth (9) 9
culture media (9) 9
ecology (9) 9
gammaproteobacteria - growth & development (9) 9
genes, rrna (9) 9
hypersaline (9) 9
microbial ecology (9) 9
nitrites - metabolism (9) 9
reduction (9) 9
rna, bacterial - genetics (9) 9
sodium chloride - pharmacology (9) 9
sulfides - metabolism (9) 9
bacteria - metabolism (8) 8
biological diversity (8) 8
ectothiorhodospiraceae - genetics (8) 8
environmental sciences (8) 8
extremely haloalkaline conditions (8) 8
genes (8) 8
genomes (8) 8
methanogenesis (8) 8
nitrates - metabolism (8) 8
original research (8) 8
phenotype (8) 8
sulfides (8) 8
sulfur cycle (8) 8
bacterial typing techniques (7) 7
base sequence (7) 7
biodegradation (7) 7
carbonates (7) 7
deoxyribonucleic-acid (7) 7
ecosystem (7) 7
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1. Full Text Haloarchaea isolated from hypersaline lakes utilize cellulose and chitin as growth substrates
by Sorokin, Dimitry Y
Frontiers in Microbiology, ISSN 1664-302X, 09/2015
Growth | Analysis | Cellulose | Chitin
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2. Full Text Natronospira proteinivora gen. nov., sp. nov, an extremely salttolerant, alkaliphilic gammaproteobacterium from hypersaline soda lakes
by Sorokin, Dimitry Y and Kublanov, Ilya V and Khijniak, Tatiana V
International Journal of Systematic and Evolutionary Microbiology, ISSN 1466-5026, 2017, Volume 67, Issue 8, pp. 2604 - 2608
Aerobic proteolytics | Haloalkaliphilic | Soda lakes | Gammaproteobacteria
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3. Full Text Isolation and characterization of an obligately chemolithoautotrophic Halothiobacillus strain capable of growth on thiocyanate as an energy source
by Sorokin, Dimitry Y and Abbas, Ben and van Zessen, Erik and Muyzer, Gerard
FEMS Microbiology Letters, ISSN 0378-1097, 05/2014, Volume 354, Issue 1, pp. 69 - 74
Abstract Molecular and microbiological analysis of a laboratory bioreactor biomass oxidizing thiocyanate at autotrophic conditions and at 1 M NaCl showed a... 
cyanate pathway | halophilic | cyanate | thiocyanate | Halothiobacillus | Cyanate | Halophilic | Thiocyanate | GEN. NOV | SULFUR-OXIDIZING GAMMAPROTEOBACTERIUM | BIODEGRADATION | THIOHALOPHILUS-THIOCYANOXIDANS | HYPERSALINE LAKES | MICROBIOLOGY | HYDROLASE | ENZYME | THIOBACILLUS | DEGRADATION | SP-NOV | Halothiobacillus - genetics | Geologic Sediments - microbiology | Thiocyanates - metabolism | Molecular Sequence Data | Halothiobacillus - isolation & purification | Halothiobacillus - classification | Phylogeny | Chemoautotrophic Growth | Halothiobacillus - metabolism | Sewage - microbiology | Sulfates | Analysis | Chemical properties
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4. Full Text Corrigendum to “Natrachaeobius chitinivorans gen. nov., sp. nov., and Natrarchaeobius haloalkaliphilus sp. nov., alkaliphilic, chitin-utilizing haloarchaea from hypersaline alkaline lakes” [Syst. Appl. Microbiol. 42 (2019) 309–318]
by Sorokin, Dimitry Y and Elcheninov, Alexander G and Toshchakov, Stepan V and Bale, Nicole J and Damsté, Jaap S. Sinninghe and Khijniak, Tatiana V and Kublanov, Ilya V
Systematic and Applied Microbiology, ISSN 0723-2020, 09/2019, Volume 42, Issue 5, p. 126003
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5. Full Text Corrigendum to "Natrachaeobius chitinivorans gen. nov., sp. nov., and Natrarchaeobius haloalkaliphilus sp. nov., alkaliphilic, chitin-utilizing haloarchaea from hypersaline alkaline lakes" [Syst. Appl. Microbiol. 42 (2019) 309-318]
by Sorokin, Dimitry Y and Elcheninov, Alexander G and Toshchakov, Stepan V and Bale, Nicole J and Damsté, Jaap S Sinninghe and Khijniak, Tatiana V and Kublanov, Ilya V
Systematic and applied microbiology, 08/2019, p. 126003
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6. Full Text Syntrophic associations from hypersaline soda lakes converting organic acids and alcohols to methane at extremely haloalkaline conditions
: Syntrophic methanogenic associations from soda lakes
by Sorokin, Dimitry Y and Abbas, Ben and Geleijnse, Mitchell and Kolganova, Tatjana V and Kleerebezem, Robbert and van Loosdrecht, Mark C. M
Environmental Microbiology, ISSN 1462-2912, 09/2016, Volume 18, Issue 9, pp. 3189 - 3202
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7. Full Text Corrigendum to “Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes” [Syst. Appl. Microbiol. 41 (2018) 355–362]
by Sorokin, Dimitry Y and Khijniak, Tatiana V and Kostrikina, Nadezhda A and Elcheninov, Alexander G and Toshchakov, Stepan V and Bale, Nicole J and Sinninghe Damsté, Jaap S and Kublanov, Ilya V
Systematic and Applied Microbiology, ISSN 0723-2020, 03/2019, Volume 42, Issue 2, pp. 261 - 262
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8. Full Text Comparative Genomics of Thiohalobacter thiocyanaticus HRh1 T and Guyparkeria sp. SCN-R1, Halophilic Chemolithoautotrophic Sulfur-Oxidizing Gammaproteobacteria Capable of Using Thiocyanate as Energy Source
by Tsallagov, Stanislav I and Sorokin, Dimitry Y and Tikhonova, Tamara V and Popov, Vladimir O and Muyzer, Gerard
Frontiers in microbiology, ISSN 1664-302X, 2019, Volume 10, p. 898
The genomes of and (formerly known as ) sp. SCN-R1, two gammaproteobacterial halophilic sulfur-oxidizing bacteria (SOB) capable of thiocyanate oxidation via... 
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9. Full Text A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments 06 Biological Sciences 0605 Microbiology 06 Biological Sciences 0604 Genetics
by Vavourakis, Charlotte D and Andrei, Adrian-Stefan and Mehrshad, Maliheh and Ghai, Rohit and Sorokin, Dimitry Y and Muyzer, Gerard
Microbiome, 09/2018, Volume 6, Issue 1
Metagenomics | Haloalkaliphilic extremophiles | Wood-Ljungdahl pathway | Candidate Phyla Radiation | Soda lake sediments
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10. Full Text Microbial diversity and biogeochemical cycling in soda lakes
by Sorokin, D.Y and Berben, T and Melton, E.D and Overmars, L and Vavourakis, C.D and Muyzer, G
Extremophiles, ISSN 1431-0651, 2014, Volume 18, Issue 5, pp. 791 - 809
Soda lakes contain high concentrations of sodium carbonates resulting in a stable elevated pH, which provide a unique habitat to a rich diversity of... 
Life Sciences | Biochemistry, general | Biotechnology | Microbial Ecology | Microbiology | Biogeochemical cycling | Haloalkaliphile | Systems biology | Meta-omics | Halophile | Soda lake | SULFUR-OXIDIZING BACTERIA | PURPLE NONSULFUR BACTERIUM | EXTREMELY HALOALKALINE CONDITIONS | SULFATE-REDUCING BACTERIUM | BIOCHEMISTRY & MOLECULAR BIOLOGY | HALO-ALKALINE CONDITIONS | EXTREMELY SALT-TOLERANT | MICROBIOLOGY | BACILLUS-PSEUDOFIRMUS OF4 | SOUTHEASTERN TRANSBAIKAL REGION | KULUNDA STEPPE ALTAI | NOV-SP NOV | Nitrogen Cycle | Sulfur - metabolism | Microbiota | Carbon Cycle | Lakes - microbiology | Methane - metabolism | Methane - chemistry | Salt-Tolerance | Lakes - chemistry | Sulfur - chemistry | Sulfur compounds | Enzymes | Carbonates | Ecosystems | Biogeochemical cycles | Biological diversity | Lakes | Biogeochemistry | Systematic biology | Review | Special Issue
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11. Full Text Desulfonatronospira sulfatiphila sp. Nov., and Desulfitispora elongata sp. nov., two novel haloalkaliphilic sulfidogenic bacteria from soda lakes
by Sorokin, Dimitry Y and Chernyh, Nikolai A
International Journal of Systematic and Evolutionary Microbiology, ISSN 1466-5026, 02/2017, Volume 67, Issue 2, pp. 396 - 401
Two novel haloalkaliphilic bacteria with dissimilatory sulfidogenic metabolism were recovered from syntrophic associations obtained from anaerobic sediments of... 
Desulfitispora | Haloalkaliphilic | Soda lakes | Desulfonatronospira | Sulfidogens | DEOXYRIBONUCLEIC-ACID | GEN. NOV | haloalkaliphilic | sulfidogens | MICROBIOLOGY | soda lakes | SYNTROPHIC ASSOCIATIONS | Peptococcaceae - classification | Formates - chemistry | Peptococcaceae - isolation & purification | Deltaproteobacteria - classification | Phylogeny | Sequence Analysis, DNA | Sulfites - chemistry | Russia | Salinity | DNA, Bacterial - genetics | Lakes - microbiology | Base Composition | Bacterial Typing Techniques | Deltaproteobacteria - genetics | Sulfates - chemistry | RNA, Ribosomal, 16S - genetics | Peptococcaceae - genetics | Deltaproteobacteria - isolation & purification | Hydrogen-Ion Concentration
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12. Biodegradation Potential of Halo(alkali)philic Prokaryotes
by Dimitry Y Sorokin and Albert J H Janssen and Gerard Muyzer
Critical Reviews in Environmental Science and Technology, ISSN 1064-3389, 04/2012, Volume 42, Issue 8, p. 811
Oil and gas exploitation and downstream processing may generate large volumes of contaminated aqueous wastewaters. Without treatment, the discharge of these... 
Biodegradation | Prokaryotes | Natural gas exploration | Bacteria | Salinity | Seawater
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13. Full Text Functional microbiology of soda lakes
by Sorokin, Dimitry Y and Banciu, Horia L and Muyzer, Gerard
Current Opinion in Microbiology, ISSN 1369-5274, 2015, Volume 25, pp. 88 - 96
Highlights • A current knowledge on extremophilic microbial communities in soda is reviewed. • The focus is made on functional groups as opposed to general... 
Pathology | GEN. NOV | MONO LAKE | EXTREMELY HALOALKALINE CONDITIONS | KULUNDA STEPPE ALTAI | EXTREMELY SALT-TOLERANT | MICROBIOLOGY | OXIDIZING GAMMAPROTEOBACTERIUM | DISSIMILATORY SULFUR | NOV-SP NOV | SULFATE-REDUCING BACTERIA | 16S RIBOSOMAL-RNA | Bacteria - metabolism | Microbiota - physiology | Carbon Cycle | Lakes - microbiology | Ecosystem | Sodium Bicarbonate - metabolism | Lakes - chemistry | Sodium Chloride - metabolism | Water Microbiology | Hydrogen-Ion Concentration | Microbiology | Sulfur compounds
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14. Full Text Sulfur-dependent respiration under extremely haloalkaline conditions in soda lake ‘acetogens’ and the description of Natroniella sulfidigena sp. nov
: Sulfur-dependent respiration in haloalkaliphilic acetogens
by Sorokin, Dimitry Y and Detkova, Ekaterina N and Muyzer, Gerard
FEMS Microbiology Letters, ISSN 0378-1097, 06/2011, Volume 319, Issue 1, pp. 88 - 95
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15. Sulfuradependent respiration under extremely haloalkaline conditions in soda lake acetogens and the description of Natroniella sulfidigena sp. nov
by Sorokin, Dimitry Y and Detkova, Ekaterina N and Muyzer, Gerard
FEMS Microbiology Letters, ISSN 0378-1097, 06/2011, Volume 319, Issue 1, pp. 88 - 95
Microbial sulfidogenesis is the main dissimilatory anaerobic process in anoxic sediments of extremely haloalkaline soda lakes. In soda lakes with a salinity... 
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16. Full Text Corrigendum to "Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes" [Syst. Appl. Microbiol. 41 (2018) 355-362]
by Sorokin, Dimitry Y and Khijniak, Tatiana V and Kostrikina, Nadezhda A and Elcheninov, Alexander G and Toshchakov, Stepan V and Bale, Nicole J and Sinninghe Damsté, Jaap S and Kublanov, Ilya V
Systematic and applied microbiology, 12/2018
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17. Full Text The microbial sulfur cycle at extremely haloalkaline conditions of soda lakes
by Sorokin, D.Y and Kuenen, J.G and Muyzer, G
Frontiers in Microbiology, 2 (article 44), March 2011, ISSN 1664-302X, 03/2011, Volume 2, p. 44
Soda lakes represent a unique ecosystem with extremely high pH (up to 11) and salinity (up to saturation) due to the presence of high concentrations of sodium... 
Thiosulfate reduction | Sulfidogenesis | Sulfate-reducing bacteria | Sulfur reduction | Soda lakes | Sulfur-oxidizing bacteria | sulfur reduction | sulfur-oxidizing bacteria | sulfate-reducing bacteria | thiosulfate reduction | MICROBIOLOGY | sulfidogenesis | soda lakes | sulfur-oxidizing bacteria (SOB) | thisoulfate reduction | sulfate-reducing bacteria (SRB)
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18. Full Text Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio
by Ahn, Anne-Catherine and Meier-Kolthoff, Jan P and Overmars, Lex and Richter, Michael and Woyke, Tanja and Sorokin, Dimitry Y and Muyzer, Gerard and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
PLoS ONE, ISSN 1932-6203, 03/2017, Volume 12, Issue 3, p. e0173517
Thioalkalivibrio is a genus of obligate chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacteria. Their habitat are soda lakes which are dual extreme... 
LIVING TREE PROJECT | SULFUR-OXIDIZING BACTERIA | MULTILOCUS SEQUENCE-ANALYSIS | DNA-DNA HYBRIDIZATION | AD-HOC-COMMITTEE | SODA LAKES | MICROBIAL DIVERSITY | MULTIDISCIPLINARY SCIENCES | VERSUTUS STRAIN ALJ-15 | SP-NOV | 16S RIBOSOMAL-RNA | Genetic Variation | RNA, Bacterial - genetics | RNA, Ribosomal, 16S - genetics | Gammaproteobacteria - genetics | Genome, Bacterial | Gammaproteobacteria - classification | Research | Distribution | Vibrio | Biological diversity | Salts | rRNA 16S | Endemic species | Ecosystems | Taxonomy | Genes | Correlation coefficients | Biogeography | Amino acids | Genomes | Hybridization | Phylogeny | pH effects | Biodiversity | Genera | Extreme environments | Species diversity | Phylogenetics | Bacteria | Oxidation | Sulfur | Strains (organisms) | Deoxyribonucleic acid--DNA | Species classification | Lakes | Chemical elements | BASIC BIOLOGICAL SCIENCES | 60 APPLIED LIFE SCIENCES | Deoxyribonucleic acid | DNA
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19. Full Text Diversity and distribution of sulfur oxidation-related genes in thioalkalivibrio, a genus of chemolithoautotrophic and haloalkaliphilic sulfur-oxidizing bacteria
by Berben, Tom and Overmars, Lex and Sorokin, Dimitry Y and Muyzer, Gerard
Frontiers in Microbiology, ISSN 1664-302X, 2019, Volume 10, p. 160
Soda lakes are saline alkaline lakes characterized by high concentrations of sodium carbonate/bicarbonate which lead to a stable elevated pH (>9), and moderate... 
Thioalkalivibrio | Denitrification | Soda lakes | Sulfur oxidation | Thiocyanate oxidation | Chemolithoautotrophs | MOLECULAR-BIOLOGY | PROTEIN | sulfur oxidation | MICROBIOLOGY | CARBON-DISULFIDE | soda lakes | thiocyanate oxidation | denitrification | COMPLETE GENOME SEQUENCE | THIOCYANATE HYDROLASE | DENITRIFICANS | SULFIDEQUINONE OXIDOREDUCTASE | REDUCTASE | SP-NOV | chemolithoautotrophs | SULFITE | Biological research | Sulfur compounds | Proteobacteria | Oxidation-reduction reaction | Genetic aspects | Research | Biological diversity | Biology, Experimental
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20. Full Text Metagenomic insights into the uncultured diversity and physiology of microbes in four hypersaline soda lake brines
by Vavourakis, Charlotte D and Ghai, Rohit and Roiguez-Valera, Francisco and Sorokin, Dimitry Y and Tringe, Susannah G and Hugenholtz, Philip and Muyzer, Gerard and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Frontiers in Microbiology, ISSN 1664-302X, 02/2016, Volume 7, Issue FEB, p. 211
Soda lakes are salt lakes with a naturally alkaline pH due to evaporative concentration of sodium carbonates in the absence of major divalent cations.... 
Chitinase | Rhodopsin | Cellulase | Halobacteria | Soda lake brines | Hydrolytics | Nanohaloarchaea | Bacteroidetes | GEN. NOV | PURPLE NONSULFUR BACTERIUM | SOLAR SALTERN | cellulase | CRYSTALLIZER PONDS | MICROBIOLOGY | soda lake brines | HALOPHILIC ARCHAEA | rhodopsin | chitinase | COMMUNITY STRUCTURE | SALINITY GRADIENT | CARBON-MONOXIDE DEHYDROGENASE | KULUNDA STEPPE ALTAI | SP-NOV | hydrolytics | ENVIRONMENTAL SCIENCES | halobacteria
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