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International dairy journal, ISSN 0958-6946, 2017, Volume 70, pp. 65 - 71
Thirty-one isolates of Lactobacillus parabuchneri were obtained from cheese containing histamine; of these, 26 were found to possess the hdcA gene encoding... 
POLYMERASE-CHAIN-REACTION | SEQUENCES | TYRAMINE | FOOD SCIENCE & TECHNOLOGY | LACTIC-ACID BACTERIA | BIOGENIC-AMINES | BUCHNERI | HISTAMINE | CHEESE | IDENTIFICATION | REPEATS | Histamine | Dairy products | Histidine | Phylogeny | Methods
Journal Article
Scientific reports, ISSN 2045-2322, 2019, Volume 9, Issue 1, pp. 1320 - 13
... Imprinting studies in plants Using Generalized Linear Models Increases Concordance across Datasets stefan Wyder 1, Michael t. Raissig1,2 and Ueli Grossniklaus 1 Genomic... 
METHYLATION | DIFFERENTIAL EXPRESSION | EVOLUTION | ENDOSPERM | MULTIDISCIPLINARY SCIENCES | SEQUENCE | POWERFUL | MEDEA POLYCOMB GENE | ALLOCATION | ALLELIC EXPRESSION | DISCOVERY | Statistical analysis | Seeds | Coverage | Genomes | Environmental factors | Ribonucleic acid--RNA | Gene expression | Statistics | Generalized linear models | Genomic imprinting | Datasets | Next-generation sequencing | Alleles
Journal Article
Nucleic acids research, ISSN 1362-4962, 2019, Volume 47, Issue D1, pp. D607 - D613
Abstract Proteins and their functional interactions form the backbone of the cellular machinery. Their connectivity network needs to be considered for the full... 
PATHWAYS | DISEASE GENES | DATABASE | BIOCHEMISTRY & MOLECULAR BIOLOGY | TISSUE | SETS | TREE | CURATION | PREDICTION | Protein Interaction Mapping - methods | Animals | Humans | Databases, Genetic | Software | Genomics - methods | Gene Ontology | Database Issue
Journal Article
Nucleic acids research, ISSN 1362-4962, 2015, Volume 43, Issue D1, pp. D447 - D452
The many functional partnerships and interactions that occur between proteins are at the core of cellular processing and their systematic characterization... 
HIGH-THROUGHPUT | SERVER | BIOCHEMISTRY & MOLECULAR BIOLOGY | KNOWLEDGE | SEQUENCE | INTACT | CURATION | MOLECULAR INTERACTION DATABASE | CONTEXT | PREDICTION | Proteins - genetics | Proteins - metabolism | Databases, Protein | Gene Expression Profiling | Proteins - classification | Software | Internet | Protein Interaction Mapping | Database Issue
Journal Article
PLoS ONE, ISSN 1932-6203, 07/2013, Volume 8, Issue 7, p. e68298
...Author(s): Violeta Spaniol 1,*, Stefan Wyder 2, Christoph Aebi 1,3 Introduction Moraxella catarrhalis colonizes the mucosal surface of the human nasopharynx... 
BRO BETA-LACTAMASE | NATURAL TRANSFORMATION | YERSINIA-PESTIS | MULTIDISCIPLINARY SCIENCES | ACUTE OTITIS-MEDIA | ESCHERICHIA-COLI | NEISSERIA-MENINGITIDIS | NASOPHARYNGEAL COLONIZATION | BRANHAMELLA-CATARRHALIS | HAEMOPHILUS-INFLUENZAE | RESPIRATORY-TRACT PATHOGEN | Cold Temperature | Oligonucleotide Array Sequence Analysis | Humans | Transcriptome | Carbohydrate Metabolism - genetics | Moraxella (Branhamella) catarrhalis - pathogenicity | Moraxellaceae Infections - microbiology | Moraxella (Branhamella) catarrhalis - genetics | Reverse Transcriptase Polymerase Chain Reaction | Sequence Analysis, RNA - methods | Virulence - genetics | Lipid Metabolism - genetics | Energy Metabolism - genetics | Gene Expression Regulation, Bacterial | RNA sequencing | Usage | Physiological aspects | Causes of | Respiratory tract diseases | Development and progression | Genetic aspects | Branhamella catarrhalis | Research | Virulence (Microbiology) | Gene expression | Phosphates | Shock | Salmonella | Temperature | Transformation | Pathogenesis | Genomics | Virulence | Genes | Ear diseases | Iron | Genomes | Infections | Proteins | Respiratory tract | Nitrogen metabolism | E coli | Temperature effects | Air temperature | Bacteria | Trends | Efflux | Cold | Outer membrane proteins | Data processing | Exposure | Metabolism | Ribonucleic acid--RNA | Pharynx | Membrane proteins | Polymerase chain reaction | Pili | Infectious diseases | Cold shock | Colonization | Viral infections | RNA | Ribonucleic acid
Journal Article
Dairy Science & Technology, ISSN 1958-5586, 9/2015, Volume 95, Issue 5, pp. 569 - 585
...-Therese Fröhlich-Wyder 1 & Walter Bisig 1 & Dominik Guggisberg 1 & Stefan Irmler 1 & Ernst Jakob 1 & Daniel Wechsler 1 Received: 27 January 2015 /Revised: 20 April... 
Chemistry | Food Science | Carbohydrate catabolism | Microbiology | Agriculture | Cheese | Adjunct culture | Obligately heterofermentative lactobacilli | LACTIC-ACID | BACTERIA | FOOD SCIENCE & TECHNOLOGY | BREVIS | RESPONSES | GENE | ARGININE DIHYDROLASE PATHWAY | GABA | EYE FORMATION | GAMMA-AMINOBUTYRIC-ACID | SEMIHARD CHEESE | Life Sciences
Journal Article
PloS one, ISSN 1932-6203, 2013, Volume 8, Issue 5, p. e64644
...Author(s): Delphine Autheman 1, Marianne Wyder 2, Michel Popoff 3, Katharina D'Herde 4, Stephan Christen 1, Horst Posthaus 2,* Introduction Clostridium... 
APOPTOSIS | ACTIVATION | PIGLETS | MULTIDISCIPLINARY SCIENCES | NECROTIZING ENTERITIS | KINASE | PROGRAMMED NECROSIS | ALPHA-TOXIN | STAPHYLOCOCCUS-AUREUS | DEATH | PORE-FORMING TOXINS | Potassium - metabolism | Calpain - metabolism | Calcium - metabolism | Necrosis | Flow Cytometry | Swine | Acrylates - pharmacology | HMGB1 Protein - metabolism | Indoles - pharmacology | Ion Transport - drug effects | Cell Membrane - metabolism | DNA Fragmentation - drug effects | Cell Membrane - drug effects | Microscopy, Electron, Transmission | Intracellular Space - drug effects | Endothelial Cells - metabolism | Dipeptides - pharmacology | Cells, Cultured | Cell Membrane - ultrastructure | Imidazoles - pharmacology | Blotting, Western | L-Lactate Dehydrogenase | Animals | Bacterial Toxins - pharmacology | Cysteine Proteinase Inhibitors - pharmacology | Intracellular Space - metabolism | Endothelial Cells - pathology | Calpain - antagonists & inhibitors | Endothelial Cells - drug effects | Calpain | Chromosomal proteins | Cell death | Endothelium | Cell culture | Calcium | Virulence | Propidium iodide | Cyclosporin A | Kinases | Hemorrhage | HMGB1 protein | Caspase-3 | Proteins | Intestine | DNA fragmentation | Chelation | Enteritis | Inhibition | Hemorrhagic enteritis | Deoxyribonucleic acid--DNA | Pigs | Efflux | Calcium (intracellular) | Iodides | Mortality | Caspase | Lactate dehydrogenase | L-Lactate dehydrogenase | Endothelial cells | Infectious diseases | Calcium efflux | Phenols | Toxins | Intracellular | Lactic acid | Potassium | Pore formation | Apoptosis | Life Sciences | Toxicology | Deoxyribonucleic acid | DNA
Journal Article
International Dairy Journal, ISSN 0958-6946, 08/2015, Volume 47, pp. 118 - 127
The production of Swiss-type cheeses with a typical number, size, and distribution of eyes is a difficult task, especially when bactofuged or microfiltrated... 
STRUCTURAL QUALITY | FOOD SCIENCE & TECHNOLOGY | LACTIC-ACID BACTERIA | GROWTH | SWISS-TYPE CHEESES | SEMIHARD CHEESE | COMPUTED-TOMOGRAPHY | PROPIONIBACTERIA | Cheese | Citric acid
Journal Article