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New Phytologist, ISSN 0028-646X, 10/2013, Volume 200, Issue 2, pp. 457 - 472
WRKY transcription factors (TFs) have been mainly associated with plant defense, but recent studies have suggested additional roles in the regulation of other... 
Full papers | Oxidative stress | Transcription factors | Stress tolerance | Genes | Stomatal conductance | Biosynthesis | Plants | Dehydration | Drought | Gene expression | salicylic acid (SA) | abscisic acid (ABA) | osmotic stress | stomata | Arabidopsis | gene regulation | WRKY transcription factor | Abscisic acid (ABA) | Salicylic acid (SA) | Gene regulation | Stomata | Osmotic stress | HIGH-SALINITY STRESSES | PROTEIN PHOSPHATASE 2C | EXPRESSION PROFILES | SYSTEMIC ACQUIRED-RESISTANCE | DROUGHT TOLERANCE | PLANT SCIENCES | NUCLEAR-LOCALIZATION | SALICYLIC-ACID | PLANT DEFENSE | NEGATIVE REGULATORS | ABSCISIC-ACID | Osmotic Pressure | Arabidopsis - physiology | Arabidopsis Proteins - genetics | Abscisic Acid - analysis | Oligonucleotide Array Sequence Analysis | Signal Transduction | Stress, Physiological | Water - metabolism | Gene Expression Profiling | Transcription Factors - genetics | Proline - analysis | Arabidopsis - genetics | Arabidopsis Proteins - metabolism | Transcription Factors - metabolism | Abscisic Acid - pharmacology | Salicylic Acid - pharmacology | Models, Biological | Plants, Genetically Modified | Gene Expression Regulation, Plant | Plant Growth Regulators - pharmacology | Plant Stomata - genetics | Plant Stomata - physiology | Plant Growth Regulators - analysis | Salicylic Acid - analysis | Arabidopsis thaliana | DNA binding proteins | Research
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2018, Volume 46, Issue W1, pp. W84 - W88
Abstract The unprecedented growth of high-throughput sequencing has led to an ever-widening annotation gap in protein databases. While computational prediction... 
VISUALIZATION | PROTEIN | GENE ONTOLOGY | BIOCHEMISTRY & MOLECULAR BIOLOGY | TOOL | Web Server Issue
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 12/2016, Volume 17, Issue 1, p. 526
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 10/2009, Volume 10, Issue 1, pp. 319 - 319
Journal Article
PLOS Computational Biology, ISSN 1553-7358, 11/2019, Volume 15, Issue 11, p. e1007419
Journal Article
by Jiang, Yuxiang and Oron, Tal Ronnen and Clark, Wyatt T and Bankapur, Asma R and Anea, D', Daniel and Lepore, Rosalba and Funk, Christopher S and Kahanda, Indika and Verspoor, Karin M and Ben-Hur, Asa and Koo, Da Chen Emily and Penfold-Brown, Duncan and Shasha, Dennis and Youngs, Noah and Bonneau, Richard and Lin, Alexana and Sahraeian, Sayed M.E and Martelli, Pier Luigi and ti, Giuseppe and Casadio, Rita and Cao, Renzhi and Zhong, Zhaolong and Cheng, Jianlin and Altenhoff, Aian and Skunca, Nives and Dessimoz, Christophe and Dogan, Tunca and Hakala, Kai and Kaewphan, Suwisa and Mehryary, Farrokh and Salakoski, Tapio and Ginter, Filip and Fang, Hai and Smithers, Ben and Oates, Matt and Gough, Julian and Törönen, Petri and Koskinen, Patrik and Holm, Liisa and Chen, Ching Tai and Hsu, Wen Lian and Bryson, Kevin and Cozzetto, Domenico and Minneci, Federico and Jones, David T and Chapman, Samuel and BKC, Dukka and Khan, Ishita K and Kihara, Daisuke and Ofer, Dan and Rappoport, Nadav and Stern, Amos and Cibrian-Uhalte, Elena and Denny, Paul and Foulger, Rebecca E and Hieta, Reija and Legge, Duncan and Lovering, Ruth C and Magrane, Michele and Melidoni, Anna N and Mutowo-Meullenet, Prudence and Pichler, Klemens and Shypitsyna, Aleksana and Li, Biao and Zakeri, Pooya and ElShal, Sarah and Tranchevent, Léon Charles and Das, Sayoni and Dawson, Natalie L and Lee, David and Lees, Jonathan G and Sillitoe, Ian and Bhat, Prajwal and Nepusz, Tamás and Romero, Alfonso E and Sasidharan, Rajkumar and Yang, Haixuan and Paccanaro, Alberto and Gillis, Jesse and Sedeño-Cortés, Aiana E and Pavlidis, Paul and Feng, Shou and Cejuela, Juan M and Goldberg, Tatyana and Hamp, Tobias and Richter, Lothar and Salamov, Asaf and Gabaldon, Toni and Marcet-Houben, Marina and Supek, Fran and Gong, Qingtian and Ning, Wei and Zhou, Yuanpeng and Tian, Weidong and Falda, Marco and Fontana, Paolo and Lavezzo, Enrico and Toppo, Stefano and Ferrari, Carlo and Giollo, Manuel and ...
Genome Biology, ISSN 1474-7596, 2016, Volume 17, Issue 1, p. 184
Journal Article
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2018, Volume 46, Issue W1, pp. W479 - W485
Abstract We present AAI-profiler, a web server for exploratory analysis and quality control in comparative genomics. AAI-profiler summarizes proteome-wide... 
GENOMICS | BIOCHEMISTRY & MOLECULAR BIOLOGY | SPECIES DEFINITION | PROKARYOTES | Web Server Issue
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2006, Volume 34, Issue Web Server issue, pp. W534 - W540
We present POXO, a comprehensive tool series to discover transcription factor binding sites from coexpressed genes (www.bioinfo.biocenter.helsinki.fi/poxo).... 
GENE | SEQUENCES | BIOCHEMISTRY & MOLECULAR BIOLOGY | RESISTANCE | EUKARYOTES | ARABIDOPSIS | PROMOTER | IDENTIFICATION | REGULATORY ELEMENTS |