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Journal of proteome research, ISSN 1535-3893, 4/2017, Volume 16, Issue 4, pp. 1817 - 1824
In shotgun proteomics analysis, user-specified parameters are critical to database search performance and therefore to the yield of confident peptide-spectrum... 
database search | tandem mass spectrometry | mass accuracy
Journal Article
Journal of Proteome Research, ISSN 1535-3893, 02/2019, Volume 18, Issue 2, pp. 585 - 593
Decoy database search with target-decoy competition (TDC) provides an intuitive, easy-to-implement method for estimating the false discovery rate (FDR)... 
mass spectrometry | false discovery rate | spectrum identification | P-VALUES | PROTEIN IDENTIFICATIONS | PEPTIDE IDENTIFICATION | STATISTICAL SIGNIFICANCE | BIOCHEMICAL RESEARCH METHODS | SPECTRA | MS/MS | PROTEOMICS | PROBABILITIES
Journal Article
JOURNAL OF PROTEOME RESEARCH, ISSN 1535-3893, 04/2019, Volume 18, Issue 4, pp. 1902 - 1906
Searching tandem mass spectra against a peptide database requires accurate knowledge of various experimental parameters, including machine settings and details... 
tandem mass tags | proteomics | QUANTIFICATION | BIOCHEMICAL RESEARCH METHODS | database search | IDENTIFICATION | CANCER | DATABASE | mass spectrometry | ITRAQ | PROTEINS | phosphorylation | isobaric labeling | REVEALS | TOOL
Journal Article
Journal of Proteome Research, ISSN 1535-3893, 04/2017, Volume 16, Issue 4, pp. 1817 - 1824
In shotgun proteomics analysis, user-specified parameters are critical to database search performance and therefore to the yield of confident peptide-spectrum... 
database search | tandem mass spectrometry | mass accuracy | QUANTITATIVE PROTEOMICS | STRATEGY | IDENTIFICATIONS | MICROBIOME | BIOCHEMICAL RESEARCH METHODS | MASS-SPECTROMETRY | Peptides - isolation & purification | Algorithms | Peptide Mapping | Databases, Protein | Peptides - genetics | Proteomics | Search Engine | Software | Tandem Mass Spectrometry - methods
Journal Article
Bioinformatics, ISSN 1367-4803, 09/2014, Volume 30, Issue 17, pp. 2521 - 2523
A Summary: Skyline is a Windows client application for targeted proteomics method creation and quantitative data analysis. The Skyline document model contains... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Mass Spectrometry - methods | Software | Proteomics - methods | Applications Notes
Journal Article
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