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1. Full Text Quantitative and combinatory determination of in situ phosphorylation of tau and its FTDP-17 mutants
by Kimura, Taeko and Hosokawa, Tomohisa and Taoka, Masato and Tsutsumi, Koji and Ando, Kanae and Ishiguro, Koichi and Hosokawa, Masato and Hasegawa, Masato and Hisanaga, Shin-Ichi
Scientific reports, ISSN 2045-2322, 09/2016, Volume 6, Issue 1, pp. 33479 - 33479
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Phosphorylation | Basal ganglia | Sodium lauryl sulfate | Neurodegenerative diseases | Gel electrophoresis | Central nervous system diseases | Kinases | Cyclin-dependent kinase 5 | Banding | Isotypes | Tau protein | Dementia disorders | Frontotemporal dementia | Alzheimers disease | Alzheimer's disease | Movement disorders | Chromosome 17 | Index Medicus
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2. Full Text TDP-43 stabilises the processing intermediates of mitochondrial transcripts
by Izumikawa, Keiichi and Nobe, Yuko and Yoshikawa, Harunori and Ishikawa, Hideaki and Miura, Yutaka and Nakayama, Hiroshi and Nonaka, Takashi and Hasegawa, Masato and Egawa, Naohiro and Inoue, Haruhisa and Nishikawa, Kouki and Yamano, Koji and Simpson, Richard J and Taoka, Masato and Yamauchi, Yoshio and Isobe, Toshiaki and Takahashi, Nobuhiro
Scientific reports, ISSN 2045-2322, 12/2017, Volume 7, Issue 1, pp. 7709 - 14
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Cell Line | Gene Expression | RNA Processing, Post-Transcriptional | Humans | Mitochondria - metabolism | DNA-Binding Proteins - genetics | RNA Stability | Genes, Mitochondrial | Mitochondria - ultrastructure | Protein Transport | DNA-Binding Proteins - metabolism | Mitochondria - genetics | Protein Binding | RNA, Transfer - genetics | Transcription, Genetic | Ribonuclease P | Mitochondria | DNA-binding protein | rRNA 16S | Homeostasis | Amyotrophic lateral sclerosis | Mitochondrial DNA | Electron transport | Intermediates | Index Medicus
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3. Full Text Toll-like receptor 8 senses degradation products of single-stranded RNA
by Tanji, Hiromi and Ohto, Umeharu and Shibata, Takuma and Taoka, Masato and Yamauchi, Yoshio and Isobe, Toshiaki and Miyake, Kensuke and Shimizu, Toshiyuki
Nature structural & molecular biology, ISSN 1545-9993, 01/2015, Volume 22, Issue 2, pp. 109 - 116
Biochemistry & Molecular Biology | Biophysics | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Protein Structure, Tertiary | Cell Line | Toll-Like Receptor 8 - chemistry | Mutagenesis, Site-Directed | Drosophila | Humans | Crystallography, X-Ray | RNA - chemistry | Animals | Mass Spectrometry | Toll-Like Receptor 8 - genetics | Chromatography, Liquid | Calorimetry | Binding Sites | Toll-Like Receptor 8 - metabolism | RNA - metabolism | Physiological aspects | Toll-like receptors | Genetic aspects | Research | RNA | Structure | Index Medicus
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4. Full Text Rab2a and Rab27a cooperatively regulate the transition from granule maturation to exocytosis through the dual effector Noc2
by Matsunaga, Kohichi and Taoka, Masato and Isobe, Toshiaki and Izumi, Tetsuro
Journal of cell science, ISSN 0021-9533, 2017, Volume 130, Issue 3, pp. 541 - 550
Secretory granule | Diabetes | Pancreatic β-cell | Regulated exocytosis | Insulin | Small GTPase | Life Sciences & Biomedicine | Science & Technology | Cell Biology | rab GTP-Binding Proteins - metabolism | Humans | Rats | Mutant Proteins - metabolism | Guanosine Triphosphate - metabolism | Exocytosis | Insulin - metabolism | Animals | Proteins - metabolism | Cytoplasmic Granules - metabolism | HEK293 Cells | Protein Binding | rab27 GTP-Binding Proteins | Mice | Proteins - chemistry | Membrane fusion | Maturation | Secretion | Biosynthesis | Glucose | Mutants | Golgi apparatus | Recruitment | Proteins | Secretory vesicles | Guanosine triphosphate | Granular materials | Auditory defects | Pancreas | Budding | Index Medicus
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5. Full Text Structural Analysis Reveals that Toll-like Receptor 7 Is a Dual Receptor for Guanosine and Single-Stranded RNA
by Zhang, Zhikuan and Ohto, Umeharu and Shibata, Takuma and Krayukhina, Elena and Taoka, Masato and Yamauchi, Yoshio and Tanji, Hiromi and Isobe, Toshiaki and Uchiyama, Susumu and Miyake, Kensuke and Shimizu, Toshiyuki
Immunity (Cambridge, Mass.), ISSN 1074-7613, 10/2016, Volume 45, Issue 4, pp. 737 - 748
X-ray crystallography | guanosine innate immunity | pattern-recognition receptor | Toll-like receptor 7 | single-stranded RNA | synergistic effect | Life Sciences & Biomedicine | Immunology | Science & Technology | Toll-Like Receptor 7 - chemistry | Cell Line | Toll-Like Receptor 7 - metabolism | RNA - immunology | Drosophila | Humans | Macaca mulatta | Guanosine - metabolism | Guanosine - immunology | Immunity, Innate - immunology | Animals | Toll-Like Receptor 7 - immunology | Binding Sites - immunology | HEK293 Cells | Ligands | RNA - metabolism | Sensors | RNA | Structure | Analysis | Crystals | Data collection | Viruses | Binding sites | Index Medicus
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6. Full Text Steroid-responsive recurrent tumefactive demyelination with multiple petechial hemorrhages along non-displaced medullary veins
by Tsuboi, Takashi and Harada, Yumiko and Suzuki, Masashi and Ando, Takashi and Atsuta, Naoki and Ohka, Fumiharu and Takeuchi, Kazuhito and Taoka, Toshiaki and Ohba, Shigeo and Nakaguro, Masato and Abe, Masato and Nakashima, Ichiro and Yoshida, Mari and Katsuno, Masahisa
Clinical neurology and neurosurgery, ISSN 0303-8467, 06/2020, Volume 193, p. 105764
Clinical Neurology | Neurosciences & Neurology | Life Sciences & Biomedicine | Surgery | Science & Technology | Edema | Enzymes | Demyelinating diseases | Brain cancer | Antibodies | Nervous system | Cerebrospinal fluid | Patients | Proteins | Pathology | Magnetic resonance imaging | Biopsy | Demyelination | Veins & arteries | Tumors
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7. Full Text Direct Identification of Human Cellular MicroRNAs by Nanoflow Liquid Chromatography–High-Resolution Tandem Mass Spectrometry and Database Searching
by Nakayama, Hiroshi and Yamauchi, Yoshio and Taoka, Masato and Isobe, Toshiaki
Analytical chemistry (Washington), ISSN 0003-2700, 03/2015, Volume 87, Issue 5, pp. 2884 - 2891
Physical Sciences | Chemistry | Chemistry, Analytical | Science & Technology | Arabidopsis - genetics | Animals | MicroRNAs - analysis | Nanotechnology - methods | Humans | Mice | HeLa Cells | Chromatography, Liquid - methods | Tandem Mass Spectrometry - methods | Databases, Factual | Usage | Liquid chromatography | MicroRNA | Research | Mass spectrometry | Genetics | Biochemistry | Ribonucleic acid--RNA | Chromatography | Index Medicus | Cellular | Liquids | Databases | Ribonucleic acids | Searching | Mathematical analysis | Nanostructure
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8. Full Text An Ionic Liquid-Based Sample Preparation Method for Next-Stage Aggregate Proteomic Analysis
by Taoka, Masato and Horita, Koji and Takekiyo, Takahiro and Uekita, Takamasa and Yoshimura, Yukihiro and Ichimura, Tohru
Analytical chemistry (Washington), ISSN 0003-2700, 11/2019, Volume 91, Issue 21, pp. 13494 - 13500
Physical Sciences | Chemistry | Chemistry, Analytical | Science & Technology | Ubiquitin | Profiling | Solubilization | Nanoparticles | Proteins | Sample preparation | Proteolysis | Formic acid | Inclusion bodies | Aging | Sodium lauryl sulfate | Ions | Workflow | Mass spectroscopy | Detergents | Contamination | Biological activity | Sodium dodecyl sulfate | Urea | Organic chemistry | Aggregates | Nematodes | Ionic liquids | Stochasticity | Mass spectrometry | Index Medicus
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9. Full Text Efficient production of isotopically labeled proteins by cell-free synthesis: A practical protocol
by Torizawa, Takuya and Shimizu, Masato and Taoka, Masato and Miyano, Hiroshi and Kainosho, Masatsune
Journal of biomolecular NMR, ISSN 0925-2738, 11/2004, Volume 30, Issue 3, pp. 311 - 325
Biochemistry, general | protocol optimization | Biophysics/Biomedical Physics | Chemistry | cell-free protein synthesis | stable isotope labeling | cell-free extract from E. coli | NMR assignments | Cell-free extract from E. coli | Stable isotope labeling | Protocol optimization | Cell-freeprotein synthesis | Biochemistry & Molecular Biology | Spectroscopy | Life Sciences & Biomedicine | Technology | Science & Technology | Peptidylprolyl Isomerase - biosynthesis | Calmodulin - biosynthesis | Xenopus laevis | Protein Biosynthesis - physiology | Models, Molecular | Recombinant Proteins - biosynthesis | Escherichia coli - chemistry | Animals | Plasmids | Mass Spectrometry | Isotope Labeling | Nuclear Magnetic Resonance, Biomolecular | Isoenzymes - biosynthesis | Viral Proteins - biosynthesis | DNA-Directed RNA Polymerases - biosynthesis | Proteins | Amino acids | Nuclear magnetic resonance--NMR | E coli | Spectrum analysis | Index Medicus
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10. Full Text FANCD2 protects genome stability by recruiting RNA processing enzymes to resolve R‐loops during mild replication stress
by Okamoto, Yusuke and Abe, Masako and Itaya, Akiko and Tomida, Junya and Ishiai, Masamichi and Takaori‐Kondo, Akifumi and Taoka, Masato and Isobe, Toshiaki and Takata, Minoru
The FEBS journal, ISSN 1742-464X, 01/2019, Volume 286, Issue 1, pp. 139 - 150
replication stress | DDX47 | FANCD2 | hnRNP U | R‐loops | R-loops | Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Hybrids | Chromatin | Stability | Transcription | Anemia | Genomes | RNA polymerase | Ribonucleic acid--RNA | Fanconi syndrome | DNA-directed RNA polymerase | Stress | Proteins | Proliferating cell nuclear antigen | Replication | RNA processing | Deoxyribonucleic acid--DNA | RNA polymerase II | Index Medicus
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11. Full Text Method for Direct Mass-Spectrometry-Based Identification of Monomethylated RNA Nucleoside Positional Isomers and Its Application to the Analysis of Leishmania rRNA
by Nakayama, Hiroshi and Yamauchi, Yoshio and Nobe, Yuko and Sato, Ko and Takahashi, Nobuhiro and Shalev-Benami, Moran and Isobe, Toshiaki and Taoka, Masato
Analytical chemistry (Washington), ISSN 0003-2700, 12/2019, Volume 91, Issue 24, pp. 15634 - 15643
Physical Sciences | Chemistry | Chemistry, Analytical | Science & Technology | Spectroscopy | Post-transcription | RNA modification | rRNA | Mass spectroscopy | Population studies | Liquid chromatography | Parasites | Ribonuclease | Isomers | E coli | Nucleosides | Scientific imaging | Mass spectrometry | Structure-function relationships | Index Medicus
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12. Full Text Direct Determination of Pseudouridine in RNA by Mass Spectrometry Coupled with Stable Isotope Labeling
by Yamaki, Yuka and Nobe, Yuko and Koike, Masami and Yamauchi, Yoshio and Hirota, Kouji and Takahashi, Nobuhiro and Nakayama, Hiroshi and Isobe, Toshiaki and Taoka, Masato
Analytical chemistry (Washington), ISSN 0003-2700, 08/2020, Volume 92, Issue 16, pp. 11349 - 11356
Physical Sciences | Chemistry | Chemistry, Analytical | Science & Technology | Deuterium | CRISPR | Spectroscopy | Post-transcription | RNA modification | Pseudouridylation | Mass spectroscopy | Labelling | Labels | Nucleoli | Stable isotopes | Uridine | Scientific imaging | In vivo methods and tests | Mass spectrometry | Uracil | Structure-function relationships | Index Medicus
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