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Proteins: Structure, Function, and Bioinformatics, ISSN 0887-3585, 10/2014, Volume 82, Issue 10, pp. 2857 - 2867
Feruloyl esterase (FAE) catalyzes the hydrolysis of the ferulic and diferulic acids present in plant cell wall polysaccharides, and tannase catalyzes the... 
Aspergillus oryzae | disulfide | X‐ray crystallography | lipase | carboxylesterase | alpha/beta‐hydrolase fold | catalytic triad | enzyme structure | ESTHER database | X-ray crystallography | Enzyme structure | Catalytic triad | Disulfide | Carboxylesterase | Lipase | Alpha/beta-hydrolase fold | LACTOBACILLUS-PLANTARUM | BIOCHEMISTRY & MOLECULAR BIOLOGY | CLASSIFICATION | ASPERGILLUS-ORYZAE | REFINEMENT | alpha/beta-hydrolase fold | TALAROMYCES-STIPITATUS | BIOPHYSICS | DATABASE | SERINE | NIGER | LIPOLYTIC ENZYME | DIVERSITY | Fungal Proteins - chemistry | Carboxylic Ester Hydrolases - chemistry | Archaeal Proteins - chemistry | Bacterial Proteins - chemistry | Substrate Specificity | Cystine - chemistry | Aspergillus oryzae - enzymology | Databases, Protein | Conserved Sequence | Archaeal Proteins - genetics | Carboxylic Ester Hydrolases - genetics | Archaeal Proteins - metabolism | Recombinant Proteins - metabolism | Amino Acid Sequence | Catalytic Domain | Biocatalysis | Protein Structure, Secondary | Bacterial Proteins - genetics | Models, Molecular | Recombinant Proteins - chemistry | Mutant Proteins - metabolism | Fungal Proteins - genetics | Sequence Alignment | Mutant Proteins - chemistry | Bacterial Proteins - metabolism | Ligands | Protein Conformation | Molecular Docking Simulation | Amino Acid Substitution | Carboxylic Ester Hydrolases - metabolism | Fungal Proteins - metabolism | Index Medicus
Journal Article
by Zhang, Bai and Zhang, Hui and Zhang, Zhen and Zhang, Bing and Liu, Tao and Payne, Samuel H and McDermott, Jason E and Zhou, Jian-Ying and Petyuk, Vladislav A and Chen, Xian and Chen, Li and Chen, Lijun and Ray, Debjit and Sun, Shisheng and Yang, Feng and Wang, Yue and Wang, Pei and Wang, Jing and Shah, Punit and Cha, Seong Won and Aiyetan, Paul and Woo, Sunghee and Tian, Yuan and Gritsenko, Marina A and Clauss, Therese R and Choi, Caitlin and Monroe, Matthew E and Thomas, Stefani and Nie, Song and Wu, Chaochao and Moore, Ronald J and Yu, Kun-Hsing and Tabb, David L and Fenyö, David and Bafna, Vineet and Rodriguez, Henry and Boja, Emily S and Hiltke, Tara and Rivers, Robert C and Sokoll, Lori and Zhu, Heng and Shih, Ie-Ming and Cope, Leslie and Pandey, Akhilesh and Snyder, Michael P and Snyder, Michael and Levine, Douglas A and Smith, Richard D and Chan, Daniel W and Rodland, Karin D and Carr, Steven A and Gillette, Michael A and Klauser, Karl R and Kuhn, Eric and Mani, D.R and Mertins, Philipp and Ketchum, Karen A and Thangudu, Ratna and Cai, Shuang and Oberti, Mauricio and Paulovich, Amanda G and Whiteaker, Jeffrey R and Edwards, Nathan J and McGarvey, Peter B and Madhavan, Subha and Whiteley, Gordon A and Skates, Steven J and White, Forest M and Kinsinger, Christopher R and Mesri, Mehdi and Shaw, Kenna M and Stein, Stephen E and Fenyo, David and Rudnick, Paul and Zhao, Yingming and Ransohoff, David F and Hoofnagle, Andrew N and Liebler, Daniel C and Sanders, Melinda E and Shi, Zhiao and Slebos, Robbert J.C and Zimmerman, Lisa J and Davies, Sherri R and Ding, Li and Ellis, Matthew J.C and Townsend, R. Reid and CPTAC Investigators and Pacific Northwest National Laboratory (PNNL), Richland, WA (US), Environmental Molecular Sciences Laboratory (EMSL)
Cell, ISSN 0092-8674, 07/2016, Volume 166, Issue 3, pp. 755 - 765
Journal Article
Journal of Proteome Research, ISSN 1535-3893, 06/2015, Volume 14, Issue 6, pp. 2707 - 2713
Journal Article
Journal of Proteome Research, ISSN 1535-3893, 03/2016, Volume 15, Issue 3, pp. 1023 - 1032
The Clinical Proteomic Tumor Analysis Consortium (CPTAC) has produced large proteomics data sets from the mass spectrometric interrogation of tumor samples... 
data analysis pipeline | cancer | proteomics data resource | CPTAC | bioinformatics | PEPTIDE IDENTIFICATION | SEARCH | BIOCHEMICAL RESEARCH METHODS | MASS-SPECTROMETRY | Neoplasms - metabolism | Biomarkers, Tumor - metabolism | Neoplasms - diagnosis | Proteome - metabolism | Humans | Proteomics | Index Medicus | Proteomics data resource
Journal Article
by Vasaikar, Suhas and Huang, Chen and Wang, Yi-Ting and Wang, Xiaojing and Wang, Yue and Petyuk, Vladislav A and Savage, Sara R and Wen, Bo and Dou, Yongchao and Zhang, Zhen and Zhang, Hui and Zhang, Bing and Zhang, Yun and Shi, Zhiao and Arshad, Osama A and Gritsenko, Marina A and Zimmerman, Lisa J and McDermott, Jason E and Clauss, Therese R and Moore, Ronald J and Zhao, Rui and Zhao, Yingming and Monroe, Matthew E and Chambers, Matthew C and Slebos, Robert J.C and Slebos, Robbert J.C and Lau, Ken S and Mo, Qianxing and Ding, Li and Ellis, Matthew and Ellis, Matthew J.C and Thiagarajan, Mathangi and Kinsinger, Christopher R and Rodriguez, Henry and Smith, Richard D and Rodland, Karin D and Liebler, Daniel C and Liu, Tao and Bavarva, Jasmin and Borucki, Melissa and Elburn, Kimberly and Hannick, Linda and Vatanian, Negin and Payne, Samuel H and Carr, Steven A and Clauser, Karl R and Gillette, Michael A and Kuhn, Eric and Mani, D.R and Cai, Shuang and Ketchum, Karen A and Thangudu, Ratna R and Whiteley, Gordon A and Paulovich, Amanda and Whiteaker, Jeff and Edward, Nathan J and Madhavan, Subha and McGarvey, Peter B and Chan, Daniel W and Shih, Ie-Ming and Zhu, Heng and Skates, Steven J and White, Forest M and Mertins, Philip and Pandey, Akhilesh and Boja, Emily and Hiltke, Tara and Mesri, Mehdi and Rivers, Robert C and Stein, Stephen E and Fenyo, David and Ruggles, Kelly and Levine, Douglas A and Oberti, Mauricio and Rudnick, Paul A and Snyder, Michael and Tabb, David L and Chen, Xian and Ransohoff, David F and Hoofnagle, Andrew and Sanders, Melinda E and Davies, Sherri R and Townsend, R. Reid and Watson, Mark and Clinical Proteomic Tumor Analysis and Clinical Proteomic Tumor Analysis Consortium
Cell, ISSN 0092-8674, 05/2019, Volume 177, Issue 4, pp. 1035 - 1049.e19
We performed the first proteogenomic study on a prospectively collected colon cancer cohort. Comparative proteomic and phosphoproteomic analysis of paired... 
RB1 | tumor antigen | proteomics | immune evasion | colon cancer | biomarkers | glycolysis | drug targets | SOX9 | proteogenomics | TANDEM MASS-SPECTRA | READ ALIGNMENT | DATABASE | HIGH-THROUGHPUT | COLORECTAL-CANCER | BIOCHEMISTRY & MOLECULAR BIOLOGY | IDENTIFICATION | TUMORS | SOFTWARE | SEQ | TOOL | CELL BIOLOGY | Proteins | Prevention | Antigens | Glucose metabolism | Medical colleges | Colon cancer | Analysis | Gastrointestinal diseases | T cells | Health aspects | Tumors | Cancer
Journal Article
by Zhang, Hui and Liu, Tao and Zhang, Zhen and Payne, Samuel H and Zhang, Bai and McDermott, Jason E and Zhou, Jian-Ying and Petyuk, Vladislav A and Chen, Li and Ray, Debjit and Sun, Shisheng and Yang, Feng and Chen, Lijun and Wang, Jing and Shah, Punit and Cha, Seong Won and Aiyetan, Paul and Woo, Sunghee and Tian, Yuan and Gritsenko, Marina A and Clauss, Therese R and Choi, Caitlin and Monroe, Matthew E and Thomas, Stefani and Nie, Song and Wu, Chaochao and Moore, Ronald J and Yu, Kun-Hsing and Tabb, David L and Fenyö, David and Bafna, Vineet and Wang, Yue and Rodriguez, Henry and Boja, Emily S and Hiltke, Tara and Rivers, Robert C and Sokoll, Lori and Zhu, Heng and Shih, Ie-Ming and Cope, Leslie and Pandey, Akhilesh and Zhang, Bing and Snyder, Michael P and Levine, Douglas A and Smith, Richard D and Chan, Daniel W and Rodland, Karin D and Carr, Steven A and Gillette, Michael A and Klauser, Karl R and Kuhn, Eric and Mani, D. R and Mertins, Philipp and Ketchum, Karen A and Thangudu, Ratna and Cai, Shuang and Oberti, Mauricio and Paulovich, Amanda G and Whiteaker, Jeffrey R and Edwards, Nathan J and McGarvey, Peter B and Madhavan, Subha and Wang, Pei and Whiteley, Gordon A and Skates, Steven J and White, Forest M and Kinsinger, Christopher R and Mesri, Mehdi and Shaw, Kenna M and Stein, Stephen E and Fenyo, David and Rudnick, Paul and Snyder, Michael and Zhao, Yingming and Chen, Xian and Ransohoff, David F and Hoofnagle, Andrew N and Liebler, Daniel C and Sanders, Melinda E and Shi, Zhiao and Slebos, Robbert J. C and Zimmerman, Lisa J and Davies, Sherri R and Ding, Li and Ellis, Matthew J. C and Townsend, R. Reid
Cell, ISSN 0092-8674, 07/2016, Volume 166, Issue 3
Journal Article