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1. Full Text The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution
by Badouin, Hélène and Gouzy, Jérôme and Grassa, Christopher J and Murat, Florent and Staton, S. Evan and Cottret, Ludovic and Lelandais-Brière, Christine and Owens, Gregory L and Carrère, Sébastien and Mayjonade, Baptiste and Legrand, Ludovic and Gill, Navdeep and Kane, Nolan C and Bowers, John E and Hubner, Sariel and Bellec, Arnaud and Bérard, Aurélie and Bergès, Hélène and Blanchet, Nicolas and Boniface, Marie-Claude and Brunel, Dominique and Catrice, Olivier and Chaidir, Nadia and Claudel, Clotilde and Donnadieu, Cécile and Faraut, Thomas and Fievet, Ghislain and Helmstetter, Nicolas and King, Matthew and Knapp, Steven J and Lai, Zhao and Le Paslier, Marie-Christine and Lippi, Yannick and Lorenzon, Lolita and Mandel, Jennifer R and Marage, Gwenola and Marchand, Gwenaëlle and Marquand, Elodie and Bret-Mestries, Emmanuelle and Morien, Evan and Nambeesan, Savithri and Nguyen, Thuy and Pegot-Espagnet, Prune and Pouilly, Nicolas and Raftis, Frances and Sallet, Erika and Schiex, Thomas and Thomas, Justine and Vandecasteele, Céline and Varès, Didier and Vear, Felicity and Vautrin, Sonia and Crespi, Martin and Mangin, Brigitte and Burke, John M and Salse, Jérôme and Muños, Stéphane and Vincourt, Patrick and Rieseberg, Loren H and Langlade, Nicolas B
Nature, ISSN 0028-0836, 06/2017, Volume 546, Issue 7656, pp. 148 - 152
The domesticated sunflower, Helianthus annuus L., is a global oil crop that has promise for climate change adaptation, because it can maintain stable yields... 
PHOSPHATIDATE PHOSPHATASE | WILD | ACID | CULTIVATED SUNFLOWER | ANNOTATION | MULTIDISCIPLINARY SCIENCES | SEQUENCE | GENES | HELIANTHUS-ANNUUS | DOMESTICATION | ASTERACEAE | Genome, Plant - genetics | Stress, Physiological - genetics | Genomics | Helianthus - metabolism | Transcriptome - genetics | Sequence Analysis, DNA | Genetic Variation | Sunflower Oil | Gene Expression Regulation, Plant | Plant Oils - metabolism | Gene Duplication - genetics | Flowers - physiology | Acclimatization - genetics | Helianthus - classification | Flowers - genetics | Evolution, Molecular | Helianthus - genetics | Genetic aspects | Gene expression | Observations | Sunflowers | Networks | Climate | Oil and gas exploration | Transcription | Research programs | Genes | Genomes | Gene sequencing | Mining | Botany | Evolution | Genetics | Flowering | Flowers & plants | Assembly | Adaptation | Duplicating milling machines | Reconstruction | Stresses | Architecture | Breeding | Crops | Organs | Genetic diversity | Metabolism | Real time | Stress | Environmental conditions | Resilience | Quantitative genetics | Climate change | Oil | Plant breeding | Oils & fats | Compatibility | Life Sciences | Vegetal Biology
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2. Full Text Reconstruction of Monocotelydoneous Proto-Chromosomes Reveals Faster Evolution in Plants than in Animals
by Jérôme Salse and Michael Abrouk and Stéphanie Bolot and Nicolas Guilhot and Emmanuel Courcelle and Thomas Faraut and Robbie Waugh and Timothy J. Close and Joachim Messing and Catherine Feuillet and Eviatar Nevo
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 9/2009, Volume 106, Issue 35, pp. 14908 - 14913
Paleogenomics seeks to reconstruct ancestral genomes from the genes of today's species. The characterization of paleo-duplications represented by 11,737... 
Barley | Genes | Synteny | Corn | Evolution | Sorghum | Genomes | Plants | Chromosomes | Rice | Paleogenomics | Grasses | ORGANIZATION | ARABIDOPSIS-THALIANA | DUPLICATIONS | grasses | paleogenomics | MULTIDISCIPLINARY SCIENCES | SEQUENCE | WHEAT | IDENTIFICATION | INSIGHT | GENOME | RICE | Animals | Time Factors | Seeds - genetics | Poaceae - genetics | Genome, Plant | Chromosomes, Plant | Flowers - genetics | Evolution, Molecular | Evolutionary biology | Plant genetics | Liliopsida | Genetic aspects | Research | Observations | Cereals | Mobility | Evolutionary genetics | gene rearrangement | Angiosperms | Speciation | Life Sciences | Agricultural sciences | Biological Sciences
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3. Full Text Analyses of pig genomes provide insight into porcine demography and evolution
by Groenen, Martien A.M and Archibald, Alan L and Uenishi, Hirohide and Tuggle, Christopher K and Takeuchi, Yasuhiro and Rothschild, Max F and Rogel-Gaillard, Claire and Park, Chankyu and Milan, Denis and Megens, Hendrik-Jan and Li, Shengting and Larkin, Denis M and Kim, Heebal and Frantz, Laurent A.F and Caccamo, Mario and Ahn, Hyeonju and Aken, Bronwen L and Anselmo, Anna and Anthon, Christian and Auvil, Loretta and Badaoui, Bouabid and Beattie, Craig W and Bendixen, Christian and Berman, Daniel and Blecha, Frank and Blomberg, Jonas and Bolund, Lars and Bosse, Mirte and Botti, Sara and Bujie, Zhan and Bystrom, Megan and Capitanu, Boris and Carvalho-Silva, Denise and Chardon, Patrick and Chen, Celine and Cheng, Ryan and Choi, Sang-Haeng and Chow, William and Clark, Richard C and Clee, Christopher and Crooijmans, Richard P.M.A and Dawson, Harry D and Dehais, Patrice and De Sapio, Fioravante and Dibbits, Bert and Drou, Nizar and Du, Zhi-Qiang and Eversole, Kellye and Fadista, Joao and Fairley, Susan and Faraut, Thomas and Faulkner, Geoffrey J and Fowler, Katie E and Fredholm, Merete and Fritz, Eric and Gilbert, James G.R and Giuffra, Elisabetta and Gorodkin, Jan and Griffin, Darren K and Harrow, Jennifer L and Hayward, Alexander and Howe, Kerstin and Hu, Zhi-Liang and Humphray, Sean J and Hunt, Toby and Hornshoøj, Henrik and Jeon, Jin-Tae and Jern, Patric and Jones, Matthew and Jurka, Jerzy and Kanamori, Hiroyuki and Kapetanovic, Ronan and Kim, Jaebum and Kim, Jae-Hwan and Kim, Kyu-Won and Kim, Tae-Hun and Larson, Greger and Lee, Kyooyeol and Lee, Kyung-Tai and Leggett, Richard and Lewin, Harris A and Li, Yingrui and Liu, Wansheng and Loveland, Jane E and Lu, Yao and Lunney, Joan K and Ma, Jian and Madsen, Ole and Mann, Katherine and Matthews, Lucy and McLaren, Stuart and Morozumi, Takeya and Murtaugh, Michael P and Narayan, Jitendra and Nguyen, Dinh Truong and Ni, Peixiang and Oh, Song-Jung and Onteru, Suneel and Panitz, Frank and Park, Eung-Woo and ... and Medicinska fakulteten and Science for Life Laboratory, SciLifeLab and Fysiologi and Medicinska och farmaceutiska vetenskapsområdet and Institutionen för medicinsk biokemi och mikrobiologi and Klinisk virologi and Uppsala universitet and Institutionen för medicinska vetenskaper and Klinisk mikrobiologi och infektionsmedicin and Institutionen för neurovetenskap
Nature, ISSN 0028-0836, 11/2012, Volume 491, Issue 7424, pp. 393 - 398
For 10,000 years pigs and humans have shared a close and complex relationship. From domestication to modern breeding practices, humans have shaped the genomes... 
RECEPTOR | TASTE | GENE | MULTIDISCIPLINARY SCIENCES | SEQUENCE | Sus scrofa - genetics | Animals | Demography | Genome - genetics | Molecular Sequence Data | Models, Animal | Phylogeny | Sus scrofa - classification | Population Dynamics | Chromosome mapping | Genetic aspects | Genomes | Research | Identification and classification | Wild boar | Hogs | Genetics | Evolution | Genes | Genomics | Life Sciences | Animal biology | Biological Sciences | Biology with specialization in Evolutionary Functional Genomics | Lantbruksvetenskaper | Animal and Dairy Science | Agricultural Sciences | Biologi med inriktning mot evolutionär funktionsgenomik | Genetik | Naturvetenskap | Biologiska vetenskaper | Husdjursvetenskap | Biology with specialization in Evolutionary Genetics | Evolutionsbiologi | Biologi med inriktning mot evolutionär genetik | Natural Sciences | Evolutionary Biology
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4. Full Text Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)
by Wang, Wen and Dong, Yang and Xie, Min and Jiang, Yu and Xiao, Nianqing and Du, Xiaoyong and Zhang, Wenguang and Tosser-Klopp, Gwenola and Wang, Jinhuan and Yang, Shuang and Liang, Jie and Chen, Wenbin and Chen, Jing and Zeng, Peng and Hou, Yong and Bian, Chao and Pan, Shengkai and Li, Yuxiang and Liu, Xin and Wang, Wenliang and Servin, Bertrand and Sayre, Brian and Zhu, Bin and Sweeney, Deacon and Moore, Rich and Nie, Wenhui and Shen, Yongyi and Zhao, Ruoping and Zhang, Guojie and Li, Jinquan and Faraut, Thomas and Womack, James and Zhang, Yaping and Kijas, James and Cockett, Noelle and Xu, Xun and Zhao, Shuhong and Wang, Jun
Nature Biotechnology, ISSN 1087-0156, 02/2013, Volume 31, Issue 2, pp. 135 - 141
We report the similar to 2.66-Gb genome sequence of a female Yunnan black goat. The sequence was obtained by combining short-read sequencing data and optical... 
CHROMOSOME | ORIGINS | RETINOIC ACID | HAIR | EVOLUTION | MAPS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GROWTH | VALIDATION | MILK | Synteny - genetics | Humans | Molecular Sequence Data | Chromosome Mapping | Animals | Cattle | Base Sequence | China | Goats - genetics | Female | High-Throughput Nucleotide Sequencing | Genome | Genome, Human | Animal genetics | RNA sequencing | Goats | Genomics | Physiological aspects | Genetic aspects | Research | Chromosomes | Optics | Genomes
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5. Full Text The duck genome and transcriptome provide insight into an avian influenza virus reservoir species
by Huang, Y and Li, Y and Burt, D.W and Chen, H and Groenen, M.A.M and Crooijmans, R.P.M.A and Kraus, R.H.S
Nature Genetics, ISSN 1061-4036, 2013, Volume 45, Issue 7, pp. 776 - 783
The duck (Anas platyrhynchos) is one of the principal natural hosts of influenza A viruses. We present the duck genome sequence and perform deep transcriptome... 
gene family evolution | phylogenetic trees | defensins | transmission | expression | protein | maximum-likelihood | a virus | positive selection | duplication | A VIRUS | MAXIMUM-LIKELIHOOD | TRANSMISSION | PROTEIN | POSITIVE SELECTION | GENETICS & HEREDITY | GENE FAMILY EVOLUTION | DUPLICATION | DEFENSINS | PHYLOGENETIC TREES | EXPRESSION | Ducks - genetics | Species Specificity | Genome - physiology | Ducks - virology | Ducks - immunology | Molecular Sequence Data | Transcriptome - genetics | Influenza in Birds - immunology | Phylogeny | Host-Pathogen Interactions - immunology | Animals | Host-Pathogen Interactions - genetics | Influenza in Birds - genetics | Base Sequence | Chickens - genetics | Female | Geese - genetics | Disease Reservoirs | Disease Vectors | Immunity - genetics | Avian influenza viruses | Zebra finch | Genetic aspects | Research | Health aspects | Genomics | Birds | Viruses | Wildfowl | Genomes | Gene expression | Chromosomes
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6. Full Text The sheep genome illuminates biology of the rumen and lipid metabolism
by Jiang, Yu and Xie, Min and Chen, Wenbin and Talbot, Richard and Maddox, Jillian F and Faraut, Thomas and Wu, Chunhua and Muzny, Donna M and Li, Yuxiang and Zhang, Wenguang and Stanton, Jo-Ann and Brauning, Rudiger and Barris, Wesley C and Hourlier, Thibaut and Aken, Bronwen L and Searle, Stephen M. J and Adelson, David L and Bian, Chao and Cam, Graham R and Chen, Yulin and Cheng, Shifeng and DeSilva, Udaya and Dixen, Karen and Dong, Yang and Fan, Guangyi and Franklin, Ian R and Fu, Shaoyin and Fuentes-Utrilla, Pablo and Guan, Rui and Highland, Margaret A and Holder, Michael E and Huang, Guodong and Ingham, Aaron B and Jhangiani, Shalini N and Kalra, Divya and Kovar, Christie L and Lee, Sandra L and Liu, Weiqing and Liu, Xin and Lu, Changxin and Lv, Tian and Mathew, Tittu and McWilliam, Sean and Menzies, Moira and Pan, Shengkai and Robelin, David and Servin, Bertrand and Townley, David and Wang, Wenliang and Wei, Bin and White, Stephen N and Yang, Xinhua and Ye, Chen and Yue, Yaojing and Zeng, Peng and Zhou, Qing and Hansen, Jacob B and Kristiansen, Karsten and Gibbs, Richard A and Flicek, Paul and Warkup, Christopher C and Jones, Huw E and Oddy, V. Hutton and Nicholas, Frank W and McEwan, John C and Kijas, James W and Wang, Jun and Worley, Kim C and Archibald, Alan L and Cockett, Noelle and Xu, Xun and Wang, Wen and Dalrymple, Brian P
Science, ISSN 0036-8075, 2014, Volume 344, Issue 6188, pp. 1168 - 1173
Sheep (Ovis aries) are a major source of meat, milk, and fiber in the form of wool and represent a distinct class of animals that have a specialized digestive... 
SITE | EVOLUTIONARY | MULTIDISCIPLINARY SCIENCES | GENES | LIVER | RUMINANT | IDENTIFICATION | PROLINE-RICH PROTEINS | EXPRESSION | CORNIFIED ENVELOPE | FAMILY | Amino Acid Sequence | Rumen - physiology | Keratins, Hair-Specific - genetics | Sheep, Domestic - genetics | Gene Expression Regulation | Transcriptome | Molecular Sequence Data | Phylogeny | Sheep, Domestic - metabolism | Fatty Acids, Volatile - metabolism | Animals | Rumen - metabolism | Fatty Acids, Volatile - physiology | Sheep, Domestic - classification | Lipid Metabolism - genetics | Wool - growth & development | Genome | Lipid Metabolism - physiology | Physiological aspects | Rumen | Sheep | Genetic aspects | Lipid metabolism | Research | Lipids | Genomes | Animal populations | Metabolism | Genetics | Biology | Wool | Mammals | Meat
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7. Full Text Napping: a public health issue From epidemiological to laboratory studies
by Faraut, Brice and Andrillon, Thomas and Vecchierini, Marie-Françoise and Leger, Damien, Pr
Sleep Medicine Reviews, ISSN 1087-0792, 2016, Volume 35, pp. 85 - 100
Summary Sleep specialists have proposed measures to counteract the negative short- and long-term consequences of sleep debt, and some have suggested the nap as... 
Neurology | Sleep Medicine | Night-work | Napping | Cognitive functions | Sleep debt | Cardiovascular risk | Sleepiness | Immunity | Public health | Stress | DONGFENG-TONGJI COHORT | C-REACTIVE PROTEIN | LOW-BACK-PAIN | SHORT DAYTIME NAP | SLOW-WAVE ACTIVITY | NEUROSCIENCES | DECLARATIVE MEMORY CONSOLIDATION | CLINICAL NEUROLOGY | ALL-CAUSE MORTALITY | PRESCHOOL-CHILDREN | CORONARY-HEART-DISEASE | ACUTE SLEEP-DEPRIVATION | Public Health | Aging - physiology | Time Factors | Humans | Cognition | Sleep - physiology | Stress, Psychological - psychology | Sleep Deprivation - epidemiology | Epidemiology | Health aspects | Sleep deprivation
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8. Full Text Pathways and genes involved in steroid hormone metabolism in male pigs: A review and update
by Robic, Annie and Faraut, Thomas and Prunier, Armelle
Journal of Steroid Biochemistry and Molecular Biology, ISSN 0960-0760, 03/2014, Volume 140, pp. 44 - 55
This paper reviews state-of-the-art knowledge on steroid biosynthesis pathways in the pig and provides an updated characterization of the porcine genes... 
Boar | Steroidogenesis | CYP11 | Hormones | 5α-Reduction | AKR1C | MOLECULAR-BIOLOGY | PORCINE LEYDIG-CELLS | ANDROGEN METABOLISM | BIOCHEMISTRY & MOLECULAR BIOLOGY | PUBERTAL DEVELOPMENT | ADRENAL TISSUE | 3-BETA-HYDROXYSTEROID DEHYDROGENASE/DELTA-DELTA ISOMERASE | 5 alpha-Reduction | ALDO-KETO REDUCTASES | ENDOCRINOLOGY & METABOLISM | RESISTANT PROSTATE-CANCER | AROMATASE CYTOCHROME-P450 | ADIPOSE-TISSUE | Testis - metabolism | Estrogens - biosynthesis | Humans | Cytochrome P-450 Enzyme System - metabolism | Androgens - biosynthesis | Male | Phosphoproteins - genetics | Phylogeny | Swine - genetics | Swine - physiology | Animals | Metabolic Networks and Pathways | Cytochrome P-450 Enzyme System - genetics | Steroids - biosynthesis | Physiological aspects | Swine | Genes | Steroid hormones | Life Sciences | Animal biology
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