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plant sciences (35) 35
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quantitative trait loci (27) 27
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chickpea (21) 21
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1. Full Text Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.)
by Varshney, Rajeev K and Varshney, Rajeev K and Thudi, Mahendar and Thudi, Mahendar and Nayak, Spurthi N and Nayak, Spurthi N and Gaur, Pooran M and Gaur, Pooran M and Kashiwagi, Junichi and Kashiwagi, Junichi and Krishnamurthy, Lakshmanan and Krishnamurthy, Lakshmanan and Jaganathan, Deepa and Jaganathan, Deepa and Koppolu, Jahnavi and Koppolu, Jahnavi and Bohra, Abhishek and Bohra, Abhishek and Tripathi, Shailesh and Tripathi, Shailesh and Rathore, Abhishek and Rathore, Abhishek and Jukanti, Aravind K and Jukanti, Aravind K and Jayalakshmi, Veera and Jayalakshmi, Veera and Vemula, Anilkumar and Vemula, Anilkumar and Singh, S J and Singh, S J and Yasin, Mohammad and Yasin, Mohammad and Sheshshayee, M S and Sheshshayee, M S and Viswanatha, K P and Viswanatha, K P
Theoretical and Applied Genetics, ISSN 0040-5752, 2/2014, Volume 127, Issue 2, pp. 445 - 462
Analysis of phenotypic data for 20 drought tolerance traits in 1–7 seasons at 1–5 locations together with genetic mapping data for two mapping populations... 
Life Sciences | Biochemistry, general | Biotechnology | Plant Biochemistry | Plant Breeding/Biotechnology | Agriculture | Plant Genetics & Genomics | LINKAGE MAP | WATER-USE | AGRONOMY | SEED YIELD | AVOIDANCE ROOT TRAITS | DIVERSITY ASSESSMENT | TERMINAL DROUGHT | PLANT SCIENCES | VARIABILITY | HORTICULTURE | GENETICS & HEREDITY | MICROSATELLITE MARKERS | STRESS | HARVEST INDEX | Analysis of Variance | Adaptation, Physiological - genetics | Droughts | Cicer - genetics | Polymerase Chain Reaction | Cicer - physiology | Quantitative Trait Loci | Chromosome mapping | Environmental aspects | Physiological aspects | Chickpea | Genetic aspects | Research | India | Original Paper
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2. Full Text Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
by Varshney, Rajeev K and Song, Chi and Saxena, Rachit K and Azam, Sarwar and Yu, Sheng and Sharpe, Andrew G and Cannon, Steven and Baek, Jongmin and Rosen, Benjamin D and Tar'an, Bunyamin and Millan, Teresa and Zhang, Xudong and Ramsay, Larissa D and Iwata, Aiko and Wang, Ying and Nelson, William and Farmer, Andrew D and Gaur, Pooran M and Soderlund, Carol and Penmetsa, R Varma and Xu, Chunyan and Bharti, Arvind K and He, Weiming and Winter, Peter and Zhao, Shancen and Hane, James K and Carrasquilla-Garcia, Noelia and Condie, Janet A and Padhyaya, Hari D and Luo, Ming-Cheng and Thudi, Mahendar and Gowda C.L.L, C.L.L and Singh, Narendra P and Lichtenzveig, Judith and Gali, Krishna K and Rubio, Josefa and Nadarajan, N and Dolezel, Jaroslav and Bansal, Kailash C and Xu, Xun and Edwards, David and Zhang, Gengyun and Kahl, Guenter and Gil, Juan and Singh, Karam B and Datta, Swapan K and Jackson, Scott A and Wang, Jun and Cook, Douglas R
Nature Biotechnology, ISSN 1087-0156, 03/2013, Volume 31, Issue 3, pp. 240 - 246
Chickpea (Cicer arietinum) is the second most widely grown legume crop after soybean, accounting for a substantial proportion of human dietary nitrogen intake... 
LEGUME | EVOLUTION | QUALITY | INTEGRATION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | DNA - genetics | Genetic Variation | DNA - chemistry | Disease Resistance | Cicer - genetics | Cicer - physiology | Repetitive Sequences, Nucleic Acid | Genotype | Agriculture | Genome, Plant - physiology | Phylogeny | Sequence Analysis, DNA | Plant breeding | Nucleotide sequence | Plant immunology | Chickpea | Genetic aspects | Research | Natural history | Legumes | Agricultural biotechnology | Food supply | Transgenic plants | Genomics
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3. Full Text Toward the sequence-based breeding in legumes in the post-genome sequencing era
by Varshney, Rajeev K and Varshney, Rajeev K and Pandey, Manish K and Pandey, Manish K and Bohra, Abhishek and Bohra, Abhishek and Singh, Vikas K and Singh, Vikas K and Thudi, Mahendar and Thudi, Mahendar and Saxena, Rachit K and Saxena, Rachit K
Theoretical and Applied Genetics, ISSN 0040-5752, 3/2019, Volume 132, Issue 3, pp. 797 - 816
Efficiency of breeding programs of legume crops such as chickpea, pigeonpea and groundnut has been considerably improved over the past decade through... 
Life Sciences | Biochemistry, general | Biotechnology | Plant Biochemistry | Plant Breeding/Biotechnology | Plant Genetics and Genomics | Agriculture | NEMATODE RESISTANCE | AGRONOMY | MARKER-ASSISTED SELECTION | DRAFT GENOME | CANDIDATE GENES | ASCOCHYTA BLIGHT | FUSARIUM-WILT | DROUGHT TOLERANCE | QTL-SEQ | PLANT SCIENCES | HORTICULTURE | GENETIC DISSECTION | GENETICS & HEREDITY | ARACHIS-DURANENSIS | Legumes | Beans | Analysis | Genomics | Genomes | Nucleotide sequencing | Mimosaceae | DNA sequencing | Marker-assisted selection | Nucleotide sequence | Crops | Data processing | Crop improvement | Genetic diversity | Agricultural economics | Plant breeding | Next-generation sequencing | Genotyping | Phenotyping | Gene mapping | Review
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4. Full Text Genotyping-by-sequencing based intra-specific genetic map refines a ‘‘QTL-hotspot” region for drought tolerance in chickpea
by Jaganathan, Deepa and Thudi, Mahendar and Kale, Sandip and Azam, Sarwar and Roorkiwal, Manish and Gaur, Pooran M and Kishor, P B Kavi and Nguyen, Henry and Sutton, Tim and Varshney, Rajeev K
Molecular Genetics and Genomics, ISSN 1617-4615, 03/2015, Volume 290, Issue 2, pp. 559 - 571
To enhance the marker density in the "QTL-hotspot" region, harboring several QTLs for drought tolerance-related traits identified on linkage group 04 (CaLG04)... 
Drought tolerance | Genotyping-by-sequencing | Candidate genes | CAPS/dCAPS | Fine mapping | Chickpea | QTL-hotspot | Marker-assisted breeding | DIVERSITY ASSESSMENT | BIOCHEMISTRY & MOLECULAR BIOLOGY | TIME | GENOME | RESPONSES | INTEGRATION | GENETICS & HEREDITY | IMPROVEMENT | ARABIDOPSIS | ACCUMULATION | "QTL-hotspot" | STRESS | CICER-ARIETINUM L | Dehydration - genetics | Genetic Association Studies | Genes, Plant | Cicer - genetics | Cicer - physiology | Chromosome Mapping | Polymorphism, Single Nucleotide | Genetic Markers | Genotyping Techniques | Quantitative Trait Loci | Genetic Linkage | Quantitative genetics | Genetic research | Single nucleotide polymorphisms | Plant physiology | Droughts | Analysis | dCAPS | Original Paper | CAPS
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5. Full Text QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea
by Singh, Vikas K and Khan, Aamir W and Jaganathan, Deepa and Thudi, Mahendar and Roorkiwal, Manish and Takagi, Hiroki and Garg, Vanika and Kumar, Vinay and Chitikineni, Annapurna and Gaur, Pooran M and Sutton, Tim and Terauchi, Ryohei and Varshney, Rajeev K
Plant Biotechnology Journal, ISSN 1467-7644, 11/2016, Volume 14, Issue 11, pp. 2110 - 2119
Summary Terminal drought is a major constraint to chickpea productivity. Two component traits responsible for reduction in yield under drought stress include... 
root ratio | trait mapping | seed weight | SNP‐index | resequencing | chickpea | Trait mapping | Chickpea | SNP-index | Resequencing | Root ratio | Seed weight | TOLERANCE | GENOME | TERMINAL DROUGHT STRESS | PLANT SCIENCES | DENSITY | QUANTITATIVE TRAIT LOCI | RESISTANCE GENES | HOTSPOT REGION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GRAIN WIDTH | CICER-ARIETINUM L | RICE | Cicer - physiology | Polymorphism, Single Nucleotide - genetics | Breeding | Cicer - metabolism | Cicer - genetics | Quantitative Trait Loci - genetics | Quantitative genetics | Genetic research | Genes | Analysis | Legumes | Profiling | Seeds | Vegetables | Abiotic stress | Genomics | Chickpeas | Single-nucleotide polymorphism | Nitrogen | Developing countries--LDCs | Weight | Quantitative trait loci | Reduction | Population | Drought
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6. Full Text Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments
by Varshney, Rajeev K and Shi, Chengcheng and Thudi, Mahendar and Mariac, Cedric and Wallace, Jason and Qi, Peng and Zhang, He and Zhao, Yusheng and Wang, Xiyin and Rathore, Abhishek and Srivastava, Rakesh K and Chitikineni, Annapurna and Fan, Guangyi and Bajaj, Prasad and Punnuri, Somashekhar and Gupta, S.K and Wang, Hao and Jiang, Yong and Couderc, Marie and Katta, Mohan A.V.S.K and Paudel, Dev R and Mungra, K.D and Chen, Wenbin and Harris-Shultz, Karen R and Garg, Vanika and Desai, Neetin and Doddamani, Dadakhalandar and Kane, Ndjido Ardo and Conner, Joann A and Ghatak, Arindam and Chaturvedi, Palak and Subramaniam, Sabarinath and Yadav, Om Parkash and Berthouly-Salazar, Cécile and Hamidou, Falalou and Wang, Jianping and Liang, Xinming and Clotault, Jérémy and Upadhyaya, Hari D and Cubry, Philippe and Rhoné, Bénédicte and Gueye, Mame Codou and Sunkar, Ramanjulu and Dupuy, Christian and Sparvoli, Francesca and Cheng, Shifeng and Mahala, R.S and Singh, Bharat and Yadav, Rattan S and Lyons, Eric and Datta, Swapan K and Tom Hash, C and Devos, Katrien M and Buckler, Edward and Bennetzen, Jeffrey L and Paterson, Andrew H and Ozias-Akins, Peggy and Grando, Stefania and Wang, Jun and Mohapatra, Trilochan and Weckwerth, Wolfram and Reif, Jochen C and Liu, Xin and Vigouroux, Yves and Xu, Xun
Nature Biotechnology, ISSN 1087-0156, 10/2017, Volume 35, Issue 10, pp. 969 - 976
Pearl millet [Cenchrus americanus (L.) Morrone] is a staple food for more than 90 million farmers in arid and semi-arid regions of sub-Saharan Africa, India... 
DOMESTICATION TRAITS | MAXIMUM-LIKELIHOOD | READ ALIGNMENT | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | DRAFT GENOME | DNA | PENNISETUM-GLAUCUM L | CO-ORTHOLOG | POPULATION-STRUCTURE | MAIZE | TOOL | Genetic Variation | Genome-Wide Association Study | Quantitative Trait, Heritable | Genes, Plant | Hybridization, Genetic | Base Sequence | Molecular Sequence Annotation | Conserved Sequence | Agriculture | Genome, Plant | Desert Climate | Pennisetum - genetics | Quantitative trait loci | Pearl millet | Genetic aspects | Nucleotide sequencing | Observations | Methods | DNA sequencing | Arid zones | Nucleotide sequence | Semi arid areas | Genes | Crops | Domestication | Population structure | Arid environments | Biosynthesis | Genomes | Genetic diversity | Population genetics | Millet | Drought resistance | Agronomy | Environment | Deserts | Drought | Food | Life Sciences | Next-generation sequencing | Agricultural genetics
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7. Full Text Genetic dissection of drought and heat tolerance in chickpea through genome-wide and candidate gene-based association mapping approaches
by Thudi, Mahendar and Upadhyaya, Hari D and Rathore, Abhishek and Gaur, Pooran Mal and Krishnamurthy, Lakshmanan and Roorkiwal, Manish and Nayak, Spurthi N and Chaturvedi, Sushil Kumar and Basu, Partha Sarathi and Gangarao, N.V.P.R and Fikre, Asnake and Kimurto, Paul and Sharma, Prakash C and Sheshashayee, M.S and Tobita, Satoshi and Kashiwagi, Junichi and Ito, Osamu and Killian, Andrzej and Varshney, Rajeev Kumar
PLoS ONE, ISSN 1932-6203, 05/2014, Volume 9, Issue 5, p. e96758
To understand the genetic basis of tolerance to drought and heat stresses in chickpea, a comprehensive association mapping approach has been undertaken.... 
DIVERSITY ASSESSMENT | MEDICAGO-TRUNCATULA | YIELD | MULTIDISCIPLINARY SCIENCES | LOCI | TRAITS | STRESS | CICER-ARIETINUM L | MAP | EFFICIENCY | RESOURCE | Temperature | Gene Frequency | Plant Roots - genetics | Genotype | Chromosome Mapping | Genome, Plant | Cicer - growth & development | Linkage Disequilibrium | Phenotype | Droughts | Alleles | Cicer - genetics | Polymorphism, Single Nucleotide | Quantitative Trait Loci | Microsatellite Repeats | Surgery | Analysis | Genes | Genomics | Genomes | Single nucleotide polymorphisms | Compression | Seeds | Linkage disequilibrium | Data compression | Mapping | Genetic distance | Single-nucleotide polymorphism | Gene sequencing | Drought resistance | Agricultural production | Flowers & plants | Drought | Bioinformatics | Cultivars | Breeding | Abiotic stress | Crops | Markers | Population structure | Genetic diversity | Simple sequence repeats | Heat | Gene frequency | Phenotyping | Heat tolerance | Gene mapping | Arrays
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8. Full Text Prioritization of candidate genes in "QTL-hotspot" region for drought tolerance in chickpea (Cicer arietinum L.)
by Kale, Sandip M and Jaganathan, Deepa and Ruperao, Pradeep and Chen, Charles and Punna, Ramu and Kudapa, Himabindu and Thudi, Mahendar and Roorkiwal, Manish and Katta, Mohan Avsk and Doddamani, Dadakhalandar and Garg, Vanika and Kishor, P. B. Kavi and Gaur, Pooran M and Nguyen, Henry T and Batley, Jacqueline and Edwards, David and Sutton, Tim and Varshney, Rajeev K
Scientific Reports, ISSN 2045-2322, 10/2015, Volume 5, Issue 1, p. 15296
A combination of two approaches, namely QTL analysis and gene enrichment analysis were used to identify candidate genes in the "QTL-hotspot" region for drought... 
MULTIDISCIPLINARY SCIENCES | SIZE | MAIZE | STRESS | LINKAGE | LEAF | MAP | RICE | Genome-Wide Association Study | Reproducibility of Results | Quantitative Trait, Heritable | Genes, Plant | Stress, Physiological - genetics | Adaptation, Biological - genetics | Chromosome Breakpoints | Genomics | Genotype | Chromosome Mapping | Genome, Plant | Cicer - metabolism | Droughts | Recombination, Genetic | Cicer - genetics | Gene Expression Regulation, Plant | Inbreeding | High-Throughput Nucleotide Sequencing | Polymorphism, Single Nucleotide | Quantitative Trait Loci | Genetic Linkage | Polymerase chain reaction | Quantitative trait loci | Legumes | Recombination | Drought resistance | Genes | Phenotyping | Single-nucleotide polymorphism | Drought
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9. Full Text Surveying the genome and constructing a high-density genetic map of napiergrass (Cenchrus purpureus Schumach)
by Paudel, Dev and Kannan, Baskaran and Yang, Xiping and Harris-Shultz, Karen and Thudi, Mahendar and Varshney, Rajeev K and Altpeter, Fredy and Wang, Jianping
Scientific Reports, ISSN 2045-2322, 12/2018, Volume 8, Issue 1, pp. 14419 - 11
Napiergrass (Cenchrus purpureus Schumach) is a tropical forage grass and a promising lignocellulosic biofuel feedstock due to its high biomass yield,... 
READ ALIGNMENT | GRASS PENNISETUM-PURPUREUM | EVOLUTION | SEGREGATION DISTORTION | SNP DISCOVERY | MULTIDISCIPLINARY SCIENCES | SEQUENCE | MARKERS | PEARL-MILLET | DIVERSITY | ACCESSIONS | Hybrids | Plant breeding | Genotyping | Nutritive value | Synteny | Genomes | Single-nucleotide polymorphism | Simple sequence repeats
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10. Full Text RNA-Seq analysis revealed genes associated with drought stress response in kabuli chickpea (Cicer arietinum L.)
by Mashaki, Keyvan Mahdavi and Garg, Vanika and Nasrollahnezhad Ghomi, Ali Asghar and Kudapa, Himabindu and Chitikineni, Annapurna and Nezhad, Khalil Zaynali and Yamchi, Ahad and Soltanloo, Hasan and Varshney, Rajeev Kumar and Thudi, Mahendar
PLoS ONE, ISSN 1932-6203, 06/2018, Volume 13, Issue 6, p. e0199774
Drought is the most important constraint that effects chickpea production globally. RNA-Seq has great potential to dissect the molecular mechanisms of... 
SALT STRESS | DISSECTION | TOLERANCE | MULTIDISCIPLINARY SCIENCES | PLANTS | MECHANISMS | DRAFT GENOME SEQUENCE | ARABIDOPSIS | TRANSCRIPTION FACTOR | EXPRESSION | CROP | Plant Roots - metabolism | Stress, Physiological | Plant Roots - genetics | Genotype | Gene Expression Profiling | RNA, Plant - genetics | Cicer - metabolism | Dehydration - genetics | Plant Shoots - metabolism | RNA, Plant - biosynthesis | Cicer - genetics | Gene Expression Regulation, Plant | Plant Shoots - genetics | Dehydration - metabolism | Molecular mechanics | RNA sequencing | Usage | Transcription factors | Research | Gene expression | Natural resources | Stresses | Seeds | Genes | Roots | Genomics | Proline | Biosynthesis | Ribonucleic acid--RNA | Molecular chains | Environmental stress | Quantitative trait loci | Molecular modelling | Pathways | Drought resistance | Flowering | Metabolic pathways | Shoots | Drought | Genotypes | RNA | Ribonucleic acid
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