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PeerJ, ISSN 2167-8359, 2015, Volume 2015, Issue 6, p. e1029
The increased availability of genomic and metagenomic data poses challenges at multiple analysis levels, including visualization of very large-scale microbial... 
Graphical representation | Metagenomics | Phylogenetic visualization | Phylogenomics | BACTERIA | MULTIDISCIPLINARY SCIENCES | GENOME | DISPLAY | EVOLUTION | F-TYPE | ANNOTATION | INTERACTIVE TREE | KEGG | TOOL | Phylogeny | Analysis | Visualization (Computers) | Genomics | Trees | Taxonomy | Metadata | Data processing | Genomes | Biology | Datasets | Consortia | Annotations | Computer graphics | Computer applications | Phylogenetics | Software | Bioinformatics
Journal Article
Nature, ISSN 0028-0836, 09/2017, Volume 549, Issue 7672, pp. 351 - 356
Journal Article
Genome Biology, ISSN 1474-7596, 04/2015, Volume 16, Issue 1, p. 67
Background: Pouchitis is common after ileal pouch-anal anastomosis (IPAA) surgery for ulcerative colitis (UC). Similar to inflammatory bowel disease (IBD),... 
VANCOMYCIN-RESISTANT | SINGULAR-VALUE DECOMPOSITION | CROHNS-DISEASE | PRINCIPAL COMPONENT ANALYSIS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | ESCHERICHIA-COLI | SUSCEPTIBILITY | GENETICS & HEREDITY | ENTEROCOCCUS-FAECALIS | INFANT GUT MICROBIOME | ANTIMICROBIAL RESISTANCE | ANTIBIOTIC-THERAPY | Multivariate Analysis | Colonic Pouches - pathology | Humans | Middle Aged | Colitis, Ulcerative - genetics | Male | Gene Expression Profiling | Young Adult | Microarray Analysis | RNA, Ribosomal, 16S - isolation & purification | Adult | Female | Gene Expression | Colonic Pouches - microbiology | Gastrointestinal Microbiome | Gastrointestinal Tract - microbiology | Pouchitis - genetics | Sequence Analysis, DNA | Pouchitis - microbiology | Colitis, Ulcerative - microbiology | Host-Pathogen Interactions - genetics | Adolescent | Inflammatory Bowel Diseases - surgery | RNA, Ribosomal, 16S - genetics | Inflammatory Bowel Diseases - microbiology | Aged | Mucous Membrane - microbiology | Cohort Studies | Inflammatory bowel diseases | rRNA 16S | Transcription | Familial adenomatous polyposis | Mucosa | Microbiomes | Genomes | Microbiota | Next-generation sequencing | Intestine | Surgery | Anastomosis | Interleukin 12 | Data processing | Principal components analysis | Abundance | Inflammation | Gene expression | Inflammatory bowel disease | Studies | Ostomy | Complement activation | Antibiotics | Biopsy | Ulcerative colitis | Research
Journal Article
Journal Article
by Taylor, Deanne M and Aronow, Bruce J and Tan, Kai and Bernt, Kathrin and Salomonis, Nathan and Greene, Casey S and Frolova, Alina and Henrickson, Sarah E and Wells, Andrew and Pei, Liming and Jaiswal, Jyoti K and Whitsett, Jeffrey and Hamilton, Kathryn E and MacParland, Sonya A and Kelsen, Judith and Heuckeroth, Robert O and Potter, S. Steven and Vella, Laura A and Terry, Natalie A and Ghanem, Louis R and Kennedy, Benjamin C and Helbig, Ingo and Sullivan, Kathleen E and Castelo-Soccio, Leslie and Kreigstein, Arnold and Herse, Florian and Nawijn, Martijn C and Koppelman, Gerard H and Haendel, Melissa and Harris, Nomi L and Rokita, Jo Lynne and Zhang, Yuanchao and Regev, Aviv and Rozenblatt-Rosen, Orit and Rood, Jennifer E and Tickle, Timothy L and Vento-Tormo, Roser and Alimohamed, Saif and Lek, Monkol and Mar, Jessica C and Loomes, Kathleen M and Barrett, David M and Uapinyoying, Prech and Beggs, Alan H and Agrawal, Pankaj B and Chen, Yi-Wen and Muir, Amanda B and Garmire, Lana X and Snapper, Scott B and Nazarian, Javad and Seeholzer, Steven H and Fazelinia, Hossein and Singh, Larry N and Faryabi, Robert B and Raman, Pichai and Dawany, Noor and Xie, Hongbo Michael and Devkota, Batsal and Diskin, Sharon J and Anderson, Stewart A and Rappaport, Eric F and Peranteau, William and Wikenheiser-Brokamp, Kathryn A and Teichmann, Sarah and Wallace, Douglas and Peng, Tao and Ding, Yang-yang and Kim, Man S and Xing, Yi and Kong, Sek Won and Bönnemann, Carsten G and Mandl, Kenneth D and White, Peter S
Developmental Cell, ISSN 1534-5807, 04/2019, Volume 49, Issue 1, pp. 10 - 29
Single-cell gene expression analyses of mammalian tissues have uncovered profound stage-specific molecular regulatory phenomena that have changed the... 
HEART-DISEASE | INFLAMMATORY-BOWEL-DISEASE | RNA-SEQ | CHILDRENS HEALTH | ACUTE LYMPHOBLASTIC-LEUKEMIA | GENE-EXPRESSION | SATELLITE CELLS | DEVELOPMENTAL BIOLOGY | CHRONIC KIDNEY-DISEASE | SOMATIC MUTATIONS | BILIARY ATRESIA | CELL BIOLOGY | Pediatrics | Analysis
Journal Article