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1. Full Text Atomic resolution structure of serine protease proteinase K at ambient temperature
by Masuda, Tetsuya and Suzuki, Mamoru and Inoue, Shigeyuki and Song, Changyong and Nakane, Takanori and Nango, Eriko and Tanaka, Rie and Tono, Kensuke and Joti, Yasumasa and Kameshima, Takashi and Hatsui, Takaki and Yabashi, Makina and Mikami, Bunzo and Nureki, Osamu and Numata, Keiji and Iwata, So and Sugahara, Michihiro
Scientific Reports, ISSN 2045-2322, 03/2017, Volume 7, Issue 1, p. 45604
Atomic resolution structures (beyond 1.20 angstrom) at ambient temperature, which is usually hampered by the radiation damage in synchrotron X-ray... 
SYSTEM | TRITIRACHIUM-ALBUM-LIMBER | COMPLEX | ACTIVE-SITE | CRYSTAL-STRUCTURE | FEMTOSECOND CRYSTALLOGRAPHY | MULTIDISCIPLINARY SCIENCES | X-RAY-DIFFRACTION | MODEL | BARRIER HYDROGEN-BOND | REVEALS | Crystallography, X-Ray - methods | Endopeptidase K - chemistry | Catalytic Domain | Temperature | Synchrotrons | Serine Endopeptidases - chemistry | Serine Proteases - chemistry | X-ray crystallography | Enzymes | Endopeptidase K | Temperature effects | Serine | Proteinase | X radiation | Serine proteinase | Crystallography | Structure-function relationships
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2. Full Text DC formulations and algorithms for sparse optimization problems
by Gotoh, Jun-ya and Gotoh, Jun-ya and Takeda, Akiko and Takeda, Akiko and Tono, Katsuya and Tono, Katsuya
Mathematical Programming, ISSN 0025-5610, 5/2018, Volume 169, Issue 1, pp. 141 - 176
We propose a DC (Difference of two Convex functions) formulation approach for sparse optimization problems having a cardinality or rank constraint. With the... 
Sparse optimization | DCA | Largest- k norm | Theoretical, Mathematical and Computational Physics | Cardinality constraint | Mathematics | Rank constraint | 90C26 | Proximal operation | 47A30 | 90C20 | Mathematical Methods in Physics | Calculus of Variations and Optimal Control; Optimization | Mathematics of Computing | Numerical Analysis | Ky Fan k norm | 90C90 | Combinatorics | Largest-k norm | REGRESSION | MATHEMATICS, APPLIED | THRESHOLDING ALGORITHM | PROGRAMMING APPROACH | VARIABLE SELECTION | MATRIX COMPLETION | COMPUTER SCIENCE, SOFTWARE ENGINEERING | SUBSET-SELECTION | OPERATIONS RESEARCH & MANAGEMENT SCIENCE | MINIMIZATION | NORM | CONSTRAINTS | REGULARIZATION | Analysis | Algorithms | Numerical analysis | Formulations | Penalty function | Constraints | Iterative methods | Optimization | Mathematical programming
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3. Full Text Nanoplasma formation by high intensity hard X-rays
by Tachibana, T and Jurek, Z and Fukuzawa, H and Motomura, K and Nagaya, K and Wada, S and Johnsson, P and Siano, M and Mondal, S and Ito, Y and Kimura, M and Sakai, T and Matsunami, K and Hayashita, H and Kajikawa, J and Liu, X.-J and Robert, E and Miron, C and Feifel, R and Marangos, J.P and Tono, K and Inubushi, Y and Yabashi, M and Son, S.-K and Ziaja, B and Yao, M and Santra, R and Ueda, K and Institutionen för fysik och astronomi and Teknisk-naturvetenskapliga vetenskapsområdet and Molekyl- och kondenserade materiens fysik and Uppsala universitet and Fysiska sektionen
Scientific Reports, ISSN 2045-2322, 06/2015, Volume 5, Issue 1, p. 10977
Using electron spectroscopy, we have investigated nanoplasma formation from noble gas clusters exposed to high-intensity hard-x-ray pulses at similar to 5 keV.... 
MULTIDISCIPLINARY SCIENCES | SIZE | FREE-ELECTRON LASER | DYNAMICS | EXPLOSION | ATOMIC CLUSTERS | IONIZATION | RADIATION | PULSES | REGION | Irradiated | Spectroscopy | Ionizing radiation | X rays | Argon | Xenon | Fysik | Physical Sciences | Naturvetenskap | Natural Sciences
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4. Full Text Oil-free hyaluronic acid matrix for serial femtosecond crystallography
by Sugahara, Michihiro and Song, Changyong and Suzuki, Mamoru and Masuda, Tetsuya and Inoue, Shigeyuki and Nakane, Takanori and Yumoto, Fumiaki and Nango, Eriko and Tanaka, Rie and Tono, Kensuke and Joti, Yasumasa and Kameshima, Takashi and Hatsui, Takaki and Yabashi, Makina and Nureki, Osamu and Numata, Keiji and Iwata, So
Scientific Reports, ISSN 2045-2322, 04/2016, Volume 6, Issue 1, p. 24484
The grease matrix was originally introduced as a microcrystal-carrier for serial femtosecond crystallography and has been expanded to applications for various... 
X-RAY-DIFFRACTION | MULTIDISCIPLINARY SCIENCES | Crystallography, X-Ray - methods | Endopeptidase K - chemistry | Oils - chemistry | Muramidase - chemistry | Hyaluronic Acid - chemistry | Proteins | Maps | Endopeptidase K | Grease | Proteinase | Skin care products | Hyaluronic acid | Crystallography | Lysozyme | Membrane proteins
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5. Full Text A compact X-ray free-electron laser emitting in the sub-ångström region
by Ishikawa, Tetsuya and Aoyagi, Hideki and Asaka, Takao and Asano, Yoshihiro and Azumi, Noriyoshi and Bizen, Teruhiko and Ego, Hiroyasu and Fukami, Kenji and Fukui, Toru and Furukawa, Yukito and Goto, Shunji and Hanaki, Hirofumi and Hara, Toru and Hasegawa, Teruaki and Hatsui, Takaki and Higashiya, Atsushi and Hirono, Toko and Hosoda, Naoyasu and Ishii, Miho and Inagaki, Takahiro and Inubushi, Yuichi and Itoga, Toshiro and Joti, Yasumasa and Kago, Masahiro and Kameshima, Takashi and Kimura, Hiroaki and Kirihara, Yoichi and Kiyomichi, Akio and Kobayashi, Toshiaki and Kondo, Chikara and Kudo, Togo and Maesaka, Hirokazu and Maréchal, Xavier M and Masuda, Takemasa and Matsubara, Shinichi and Matsumoto, Takahiro and Matsushita, Tomohiro and Matsui, Sakuo and Nagasono, Mitsuru and Nariyama, Nobuteru and Ohashi, Haruhiko and Ohata, Toru and Ohshima, Takashi and Ono, Shun and Otake, Yuji and Saji, Choji and Sakurai, Tatsuyuki and Sato, Takahiro and Sawada, Kei and Seike, Takamitsu and Shirasawa, Katsutoshi and Sugimoto, Takashi and Suzuki, Shinsuke and Takahashi, Sunao and Takebe, Hideki and Takeshita, Kunikazu and Tamasaku, Kenji and Tanaka, Hitoshi and Tanaka, Ryotaro and Tanaka, Takashi and Togashi, Tadashi and Togawa, Kazuaki and Tokuhisa, Atsushi and Tomizawa, Hiromitsu and Tono, Kensuke and Wu, Shukui and Yabashi, Makina and Yamaga, Mitsuhiro and Yamashita, Akihiro and Yanagida, Kenichi and Zhang, Chao and Shintake, Tsumoru and Kitamura, Hideo and Kumagai, Noritaka
Nature Photonics, ISSN 1749-4885, 08/2012, Volume 6, Issue 8, pp. 540 - 544
The free-electron laser, first proposed by Madey(1) in 1971, has significantly reduced laser wavelengths to the vacuum ultraviolet(2,3) and soft X-ray... 
PHYSICS, APPLIED | STIMULATED-EMISSION | AMPLIFIED SPONTANEOUS EMISSION | OPERATION | EXTREME-ULTRAVIOLET | MAGNETIC-FIELD | WATER WINDOW | OPTICS | RADIATION | GAIN | Pulse duration | Emittance | Soft x-rays | Wavelengths | Free electron lasers | Lasers | X-rays | Coherent light
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6. Full Text Hydroxyethyl cellulose matrix applied to serial crystallography
by Sugahara, Michihiro and Nakane, Takanori and Masuda, Tetsuya and Suzuki, Mamoru and Inoue, Shigeyuki and Song, Changyong and Tanaka, Rie and Nakatsu, Toru and Mizohata, Eiichi and Yumoto, Fumiaki and Tono, Kensuke and Joti, Yasumasa and Kameshima, Takashi and Hatsui, Takaki and Yabashi, Makina and Nureki, Osamu and Numata, Keiji and Nango, Eriko and Iwata, So
Scientific Reports, ISSN 2045-2322, 12/2017, Volume 7, Issue 1, pp. 703 - 9
Serial femtosecond crystallography (SFX) allows structures of proteins to be determined at room temperature with minimal radiation damage. A highly viscous... 
SYSTEM | STRUCTURAL-CHANGES | FEMTOSECOND CRYSTALLOGRAPHY | RESOLUTION STRUCTURE | CRYSTAL-STRUCTURE | MULTIDISCIPLINARY SCIENCES | SAD | X-RAY-DIFFRACTION | CUBIC PHASE INJECTOR | PROTEIN-STRUCTURE DETERMINATION | SOFTWARE | Diffraction | Endopeptidase K | Crystallography | Proteinase | Cellulose
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7. Full Text Deep inner-shell multiphoton ionization by intense X-ray free-electron laser pulses
by Fukuzawa, H and Son, S.-K and Motomura, K and Mondal, S and Nagaya, K and Wada, S and Liu, X.-J and Feifel, R and Tachibana, T and Ito, Y and Kimura, M and Sakai, T and Matsunami, K and Hayashita, H and Kajikawa, J and Johnsson, P and Siano, M and Kukk, E and Rudek, B and Erk, B and Foucar, L and Robert, E and Miron, C and Tono, K and Inubushi, Y and Hatsui, T and Yabashi, M and Yao, M and Santra, R and Ueda, K and Institutionen för fysik och astronomi and Teknisk-naturvetenskapliga vetenskapsområdet and Molekyl- och kondenserade materiens fysik and Uppsala universitet and Fysiska sektionen
Physical Review Letters, ISSN 0031-9007, 04/2013, Volume 110, Issue 17, p. 173005
We have investigated multiphoton multiple ionization dynamics of xenon atoms using a new x-ray free-electron laser facility, SPring-8 Angstrom Compact free... 
ATOMS | PHYSICS, MULTIDISCIPLINARY | OPERATION | EXTREME-ULTRAVIOLET | REGION | Physics - Atomic Physics | Fysik | Physical Sciences | Naturvetenskap | Natural Sciences
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8. Full Text Real-time observation of X-ray-induced intramolecular and interatomic electronic decay in CH2I2
by Fukuzawa, H and Takanashi, T and Kukk, E and Motomura, K and Wada, SI and Nagaya, K and Ito, Y and Nishiyama, T and Nicolas, C and Kumagai, Y and Iablonskyi, D and Mondal, S and Tachibana, T and You, D and Yamada, S and Sakakibara, Y and Asa, K and Sato, Y and Sakai, T and Matsunami, K and Umemoto, T and Kariyazono, K and Kajimoto, S and Sotome, H and Johnsson, P and Schoffler, MS and Kastirke, G and Kooser, K and Liu, XD and Asavei, T and Neagu, L and Molodtsov, S and Ochiai, K and Kanno, M and Yamazaki, K and Owada, S and Ogawa, K and Katayama, T and Togashi, T and Tono, K and Yabashi, M and Ghosh, A and Gokhberg, K and Cederbaum, LS and Kuleff, AI and Fukumura, H and Kishimoto, N and Rudenko, A and Miron, C and Kono, H and Ueda, K and Atomic Physics and Atomfysik and Lund University and Lunds universitet
NATURE COMMUNICATIONS, ISSN 2041-1723, 05/2019, Volume 10, Issue 1, pp. 1 - 8
The increasing availability of X-ray free-electron lasers (XFELs) has catalyzed the development of single-object structural determination and of structural... 
ENERGY | MULTIDISCIPLINARY SCIENCES | GREENS-FUNCTION | DYNAMICS | ATOMS | FEMTOSECOND | FRAGMENTATION | IONIZATION | CHARGE | MOLECULES | Femtosecond | Electron states | Lasers | Free electrons | Free electron lasers | Cascades | Decay | Infrared lasers | Real time | Iodine | Augers | Physics | Fysik | Atom and Molecular Physics and Optics | Physical Sciences | Naturvetenskap | Natural Sciences | Atom- och molekylfysik och optik
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9. Full Text Supportive care
by Clarke, S and Tan, C and Read, J and Phan, V and Peat, J. K and Beale, P and Gornadha, Y and Elaidi, R. T and Scotte, F and Vano, Y and Pecuchet, N and Gachet, J and Medioni, J and Fabre, E and Oudard, S and Freyer, G and Jovenin, N and Yazbek, G and Villanueva, C. B and Hussain, A and Bethune, A and Rotarski, M and Simon, H and Boulanger, V and Hummerlsberger, M and Gladkov, O. A and Bondarenko, I. M and Elsaesser, R and Buchner, A and Bias, P and Seligmann, J. F and Young, A and Heath, G and Cairns, D and Anthoney, A and Hall, G and Seymour, M and Swinson, D and Santini, D and Guida, F. M and Schiavon, G and Venditti, O and Frezza, A. M and Imperatori, M and Spoto, C and Berti, P and Vincenzi, B and Tonini, G and Del Mastro, L and Levaggi, A and Poggio, F and Giraudi, S and Bighin, C and D'Alonzo, A and Lambertini, M and Pronzato, P and Bruzzi, P and He, M and Huang, S and Yu, L and Shi, G and Deng, J and Zhang, X and Wang, X and Chen, J and Nong, X and Shen, P and Aarts, M. J and Grutters, J. P and Peters, F. P and Mandigers, C. M and Dercksen, M. W and Stouthard, J. M and Nortier, J. W and van Laarhoven, H. W and van Warmerdam, L. J and Tjan-Heijnen, V. C and Falandry, C and Krakowski, I and Cure, H and Carola, E and Soubeyran, P and Guerin, O and Aapro, M. S and Gascon, P and Ludwig, H and Bokemeyer, C and Boccadoro, M and Turner, M and Muenzberg, M and Denhaerynck, K and Abraham, I and Macdonald, K and Lotz, J and Tesch, H and Verpoort, K and Rosati, M. S and Salesi, N and Barker, H and Agrawal, S and ... and on behalf of BSMO/BHS and Lotuz Investigators
Annals of Oncology, ISSN 0923-7534, 09/2012, Volume 23, Issue suppl 9, pp. ix499 - ix527
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10. Full Text OS1. gastric cancer
by Tanaka, K and Arao, T and Tamura, D and Aomatsu, K and Furuta, K and Matsumoto, K and Kaneda, H and Kudo, K and Fujita, Y and Kimura, H and Yanagihara, K and Yamada, Y and Okamoto, I and Nakagawa, K and Nishio, K and Ooki, A and Yamashita, K and Yamaguchi, K and Asayama, M and Kadowaki, S and Hara, H and Yamada-murano, T and Arima, M and Tada, M and Watanabe, M and Yamashita-Kashima, Y and Shu, S and Yorozu, K and Iwai, T and Hashizume, K and Fujimoto-Ouchi, K and Harada, N and Tamaki, T and Shimizu, T and Katashiba, Y and Mikayama, H and Nomura, S and Kobayashi, N and Lim, H. Y and Kim, H and Park, C. K and Hour, T.- C and Wu, H.- L and Chuang, S.- J and Lu, C.- Y and Huang, C.- Y and Wu, W.- J and Pu, Y.- S and Wang, S.- W and Wu, H.- H and Wang, P.- C and Chou, W.- Y and Tang, C.- H and Tan, K.- L and Gan, S.- H and Hassan, R and Abdullah, A. D and Husin, A and Baba, A. A and Ankathil, R and Nagai, T and De Velasco, M. A and Sato, A and Nogami, N and Shinkai, T and Kozuki, T and Ogino, A and Misumi, Y and Hosomi, Y and Shimokawa, T and Hida, N and Seki, N and Honma, C and Okamoto, H and Shibuya, M and Morita, S and Watanabe, K and Terashima, T and Matsuzaki, T and Fujiwara, H and Nakaya, A and Ogawa, R and Naitou, A and Seki, Y and Kinoshita, A and Gouchi, M and Saito, Z and Yoshii, Y and Samejima, T and Seki, A and Kaneko, Y and Takeda, H and Kuwano, K and Sekihara, K and Okuma, Y and Takagi, Y and Iguchi, M and Okamura, T and Yoshino, R and Tomizawa, Y and ... and Korean Cancer Study Group(KCSG) and PRIAS-JAPAN Study Group
Annals of Oncology, ISSN 0923-7534, 10/2012, Volume 23, Issue suppl 11, pp. xi132 - xi167
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11. Full Text Ultrafast Coulomb explosion of a diiodomethane molecule induced by an X-ray free-electron laser pulse
by Takanashi, Tsukasa and Nakamura, Kosuke and Kukk, Edwin and Motomura, Koji and Fukuzawa, Hironobu and Nagaya, Kiyonobu and Wada, Shin-Ichi and Kumagai, Yoshiaki and Iablonskyi, Denys and Ito, Yuta and Sakakibara, Yuta and You, Daehyun and Nishiyama, Toshiyuki and Asa, Kazuki and Sato, Yuhiro and Umemoto, Takayuki and Kariyazono, Kango and Ochiai, Kohei and Kanno, Manabu and Yamazaki, Kaoru and Kooser, Kuno and Nicolas, Christophe and Miron, Catalin and Asavei, Theodor and Neagu, Liviu and Schöffler, Markus and Kastirke, Gregor and Liu, Xiao-Jing and Rudenko, Artem and Owada, Shigeki and Katayama, Tetsuo and Togashi, Tadashi and Tono, Kensuke and Yabashi, Makina and Kono, Hirohiko and Ueda, Kiyoshi
Physical Chemistry Chemical Physics, ISSN 1463-9076, 2017, Volume 19, Issue 30, pp. 19707 - 19721
Coulomb explosion of diiodomethane CH2I2 molecules irradiated by ultrashort and intense X-ray pulses from SACLA, the Japanese X-ray free electron laser... 
SINGLE | DISSOCIATION | DFTB METHOD | CO2 | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | DYNAMICS | CHEMISTRY, PHYSICAL | ATOMS | FRAGMENTATION | IONIZATION | CHARGE
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12. Full Text Room-temperature calorimeter for x-ray free-electron lasers
by Tanaka, T and Kato, M and Saito, N and Tono, K and Yabashi, M and Ishikawa, T
Review of Scientific Instruments, ISSN 0034-6748, 09/2015, Volume 86, Issue 9, p. 093104
We have developed a room-temperature calorimeter for absolute radiant power measurements of x-ray free-electron lasers. This room-temperature calorimeter is an... 
CRYOGENIC RADIOMETER | VACUUM | INSTRUMENTS & INSTRUMENTATION | PHYSICS, APPLIED | LIGHT | ULTRAVIOLET | SUBSTITUTION RADIOMETER | INTENSITY MEASUREMENT | REGION | Radiometers | Uncertainty | Power measurement | Lasers | Free electron lasers | Radiant heating | Synchrotron radiation | Room temperature | Electrons | FREE ELECTRON LASERS | INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND TECHNOLOGY | SYNCHROTRON RADIATION SOURCES | X RADIATION | CALORIMETERS | RADIOMETERS | TEMPERATURE RANGE 0273-0400 K
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13. Full Text Ultrafast dynamics of a nucleobase analogue illuminated by a short intense x-ray free electron laser pulse
by Nagaya, K and Motomura, K and Kukk, E and Fukuzawa, H and Wada, S and Tachibana, T and Ito, Y and Mondal, S and Sakai, T and Matsunami, K and Koga, R and Ohmura, S and Takahashi, Y and Kanno, M and Rudenko, A and Nicolas, C and Liu, X.-J and Zhang, Y and Chen, J and Anand, M and Jiang, Y.H and Kim, D.-E and Tono, K and Yabashi, M and Kono, H and Miron, C and Yao, M and Ueda, K and Kansas State University
Physical Review X, ISSN 2160-3308, 2016, Volume 6, Issue 2, p. 021035
Understanding x-ray radiation damage is a crucial issue for both medical applications of x rays and x-ray free-electron-laser (XFEL) science aimed at molecular... 
PHYSICS, MULTIDISCIPLINARY | OPERATION | ATOMS | IONIZATION | CHARGE | MOLECULES | REGION | NUCLEAR PHYSICS AND RADIATION PHYSICS | charge | molecules | ionization | region | operation | atoms
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