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Nature, ISSN 0028-0836, 03/2017, Volume 543, Issue 7645, pp. 373 - 377
Journal Article
PLoS Computational Biology, ISSN 1553-734X, 2015, Volume 11, Issue 9, p. e1004511
Journal Article
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, ISSN 1549-9618, 05/2019, Volume 15, Issue 5, pp. 3402 - 3409
The NAST force field is a popular tool for modeling RNA and is typical of low-resolution approaches. Unfortunately, some combinations of bond and dihedral... 
KNOWLEDGE-BASED POTENTIALS | ALIGNMENT | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | CHEMISTRY, PHYSICAL | SECONDARY STRUCTURE | IDENTIFICATION | PREDICTION | Thermodynamics | Nucleic Acid Conformation | RNA - chemistry | Computer Simulation | Disasters | Computer simulation | Cliffs | Spline functions | Parameterization | Numerical stability | Crystal structure
Journal Article
Algorithms for Molecular Biology, ISSN 1748-7188, 07/2014, Volume 9, Issue 1, pp. 18 - 18
One can search for messages in the digits of p or a Kazakhstan telephone book, but there may be hidden messages closer to home. A recent publication in this... 
Plots | Significant digits | Multiple sequence alignments | Units | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Information management | Efficiency | Normal distribution | Standard deviation
Journal Article
PLoS Computational Biology, ISSN 1553-734X, 09/2015, Volume 11, Issue 9
  A lipidome is the set of lipids in a given organism, cell or cell compartment and this set reflects the organism's synthetic pathways and interactions with... 
Studies | Algorithms | Yeast | Insects | Lipids | Principal components analysis | Biochemistry | Organisms | Metabolism | Methods | Data bases
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 7/2009, Volume 37, Issue suppl_2, pp. W480 - W484
Protein structures often show similarities to another which would not be seen at the sequence level. Given the coordinates of a protein chain, the SALAMI... 
PROFILES | SUPERIMPOSITION | STRUCTURE ALIGNMENT ALGORITHM | SCOP DATABASE | MATRICES | BIOCHEMISTRY & MOLECULAR BIOLOGY | SEQUENCE | CLASSIFICATION | SIMILARITY | PROGRAM | TOOL | Amino Acid Sequence | User-Computer Interface | Sequence Alignment | Software | Structural Homology, Protein | Databases, Protein
Journal Article
Journal Article
Journal Article
Bioinformatics, ISSN 1367-4803, 11/2013, Volume 29, Issue 22, pp. 2941 - 2942
There are many programs that can read the secondary structure of an RNA molecule and draw a diagram, but hardly any that can cope with 10 3 bases. RNAfdl is... 
DISPLAY | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | RNA, Ribosomal, 23S - chemistry | Software | Nucleic Acid Conformation | RNA - chemistry
Journal Article
ISSN 1460-2059, 2013
There are many programs that can read the secondary structure of an RNA molecule and draw a diagram, but hardly any that can cope with 10(3) bases. RNAfdl is... 
Journal Article
The Journal of Physical Chemistry A, ISSN 1089-5639, 05/1999, Volume 103, Issue 19, pp. 3596 - 3607
We present the newest version of the GROningen MOlecular Simulation program package, GROMOS96. GROMOS96 has been developed for the dynamic modelling of... 
DIMENSIONS | DISTANCE RESTRAINTS | FIELD | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | CHEMISTRY, PHYSICAL | PARAMETRIZATION | MOLECULAR-DYNAMICS SIMULATIONS | FREE-ENERGY | Molecular dynamics | Biomolecules
Journal Article
Bioinformatics, ISSN 1367-4803, 03/2013, Volume 29, Issue 5, pp. 588 - 596
Journal Article
Journal of Biological Chemistry, ISSN 0021-9258, 12/2014, Volume 289, Issue 49, pp. 34214 - 34228
Journal Article
Journal of Chemical Theory and Computation, ISSN 1549-9618, 10/2012, Volume 8, Issue 10, pp. 3663 - 3670
We have implemented a method for the design of RNA sequences that should fold to arbitrary secondary structures. A popular energy model allows one to take the... 
MONTE-CARLO APPROACH | MOLECULAR-DYNAMICS | NOVO PROTEIN DESIGN | ENERGY MINIMIZATION | SEARCH | ALGORITHM | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | LAMBDA-DYNAMICS | CHEMISTRY, PHYSICAL | OPTIMIZATION | POTENTIALS | PREDICTION
Journal Article