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Journal Article
Bioinformatics, ISSN 1367-4803, 11/2018, Volume 34, Issue 21, pp. 3755 - 3758
Abstract Motivation The interactive visualization of very large macromolecular complexes on the web is becoming a challenging problem as experimental... 
VISUALIZATION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | HTML5 | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | PROTEIN DATA-BANK | ATOM | Applications Notes
Journal Article
Bioinformatics, ISSN 1367-4803, 09/2016, Volume 32, Issue 18, pp. 2850 - 2852
Motivation: The prediction of the iron-sulfur proteome is highly desirable for biomedical and biological research but a freely available tool to predict... 
PROTEINS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | METALLOPROTEINS | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Amino Acid Sequence | Proteome | Iron | Software | Internet | Sulfur | Forecasting
Journal Article
JBIC Journal of Biological Inorganic Chemistry, ISSN 0949-8257, 8/2014, Volume 19, Issue 6, pp. 937 - 945
We have developed a database search tool to identify metal sites having structural similarity to a query metal site structure within the MetalPDB database of... 
Life Sciences | Biochemistry, general | Microbiology | Metalloprotein | Iron | Metalloenzyme | Bioinorganic chemistry | Structural biology | Zinc | Online searching | Internet/Web search services | Algorithms | Database searching | Metalloenzymes
Journal Article
Journal of Chemical Information and Modeling, ISSN 1549-9596, 11/2013, Volume 53, Issue 11, pp. 3064 - 3075
We developed a new software tool, MetalS2, for the structural alignment of Minimal Functional Sites (MFSs) in metal-binding biological macromolecules. MFSs are... 
Algorithms | Metals - chemistry | Nucleic Acids - chemistry | Databases, Protein | Models, Molecular | Carrier Proteins - chemistry | Protein Conformation | Software | Structural Homology, Protein | Binding Sites | Databases, Nucleic Acid
Journal Article
Journal of Inorganic Biochemistry, ISSN 0162-0134, 02/2018, Volume 179, pp. 40 - 53
Journal Article
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, ISSN 0949-8257, 08/2014, Volume 19, Issue 6, pp. 937 - 945
Journal Article
Journal of Chemical Information and Modeling, ISSN 1549-9596, 11/2013, Volume 53, Issue 11, p. 3064
  We developed a new software tool, MetalS..., for the structural alignment of Minimal Functional Sites (MFSs) in metal-binding biological macromolecules. MFSs... 
Proteins | Molecular structure | Chemical reactions | Binding sites
Journal Article
JOURNAL OF CHEMICAL INFORMATION AND MODELING, ISSN 1549-9596, 11/2013, Volume 53, Issue 11, pp. 3064 - 3075
We developed a new software tool, MetalS(2), for the structural alignment of Minimal Functional Sites (MFSs) in metal-binding biological macromolecules. MFSs... 
CHEMISTRY, MEDICINAL | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | DATABASE | SPECTROSCOPY | ACTIVE-SITE | METALLOPROTEINS | ALGORITHM | SEQUENCE | BIOINORGANIC CHEMISTRY | COMPUTER SCIENCE, INFORMATION SYSTEMS | CENTERS | CHEMISTRY, MULTIDISCIPLINARY
Journal Article
PLoS computational biology, 06/2017, Volume 13, Issue 6, p. e1005575
Recent advances in experimental techniques have led to a rapid growth in complexity, size, and number of macromolecular structures that are made available... 
Computational Biology - methods | Macromolecular Substances - chemistry | Databases, Chemical | Molecular Structure | Software | Internet | Macromolecular Substances - analysis | Macromolecular Substances - classification
Journal Article
by Burley, Stephen K and Berman, Helen M and Bhikadiya, Charmi and Bi, Chunxiao and Chen, Li and Costanzo, Luigi Di and Christie, Cole and Duarte, Jose M and Dutta, Shuchismita and Feng, Zukang and Ghosh, Sutapa and Goodsell, David S and Green, Rachel Kramer and Guranovic, Vladimir and Guzenko, Dmytro and Hudson, Brian P and Liang, Yuhe and Lowe, Robert and Peisach, Ezra and Periskova, Irina and Randle, Chris and Rose, Alexander and Sekharan, Monica and Shao, Chenghua and Tao, Yi-Ping and Valasatava, Yana and Voigt, Maria and Westbrook, John and Young, Jasmine and Zardecki, Christine and Zhuravleva, Marina and Kurisu, Genji and Nakamura, Haruki and Kengaku, Yumiko and Cho, Hasumi and Sato, Junko and Kim, Ju Yaen and Ikegawa, Yasuyo and Nakagawa, Atsushi and Yamashita, Reiko and Kudou, Takahiro and Bekker, Gert-Jan and Suzuki, Hirofumi and Iwata, Takeshi and Yokochi, Masashi and Kobayashi, Naohiro and Fujiwara, Toshimichi and Velankar, Sameer and Kleywegt, Gerard J and Anyango, Stephen and Armstrong, David R and Berrisford, John M and Conroy, Matthew J and Dana, Jose M and Deshpande, Mandar and Gane, Paul and Gáborová, Romana and Gupta, Deepti and Gutmanas, Aleksandras and Koča, Jaroslav and Mak, Lora and Mir, Saqib and Mukhopadhyay, Abhik and Nadzirin, Nurul and Nair, Sreenath and Patwardhan, Ardan and Paysan-Lafosse, Typhaine and Pravda, Lukas and Salih, Osman and Sehnal, David and Varadi, Mihaly and Vǎreková, Radka and Markley, John L and Hoch, Jeffrey C and Romero, Pedro R and Baskaran, Kumaran and Maziuk, Dimitri and Ulrich, Eldon L and Wedell, Jonathan R and Yao, Hongyang and Livny, Miron and Ioannidis, Yannis E and WwPDB Consortium and Protein Data Bank Japan and wwPDB consortium
Nucleic Acids Research, ISSN 0305-1048, 01/2019, Volume 47, Issue D1, pp. D520 - D528
Abstract The Protein Data Bank (PDB) is the single global archive of experimentally determined three-dimensional (3D) structure data of biological... 
SYSTEM | CHALLENGE | DEPOSITION | BIOCHEMISTRY & MOLECULAR BIOLOGY | VALIDATION | REPRESENTATION | RESOURCE DESCRIPTION FRAMEWORK | PREDICTION | TOOLS | Database Issue
Journal Article