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Methods in Molecular Biology, ISSN 1064-3745, 2017, Volume 1533, pp. 183 - 200
PLAZA 3.0 is an online resource for comparative genomics and offers a versatile platform to study gene functions and gene families or to analyze genome... 
Comparative genomics | Gene functions | Gene family | Orthology | Plants | User-Computer Interface | Computational Biology - methods | Multigene Family | Genes, Plant | Molecular Sequence Annotation | Databases, Genetic | Genetic Markers | Genome, Plant | Phylogeny | Plants - classification | Plants - genetics | Software | Genomics - methods | Web Browser
Journal Article
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, ISSN 1874-9399, 10/2019, p. 194447
Journal Article
Plant Cell, ISSN 1040-4651, 8/2016, Volume 28, Issue 8, pp. 1759 - 1768
Genome sequencing is becoming cheaper and faster thanks to the introduction of next-generation sequencing techniques. Dozens of new plant genome sequences have... 
COMMENTARY | ARABIDOPSIS-THALIANA | PROJECT | EVOLUTION | ANNOTATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | SIZE | DISPENSABLE GENOME | TOOL | PLANT SCIENCES | CELL BIOLOGY | Chromosome Mapping | Genome, Plant - genetics | High-Throughput Nucleotide Sequencing - methods | Sequence Analysis, DNA - methods | Nucleotide sequencing | Research | Methods | Plant genetics | DNA sequencing
Journal Article
by Wyrwicz, Lucjan S and Mangogna, Manuela and Rayko, Edda and Green, Beverley R and Lommer, Markus and Van de Peer, Yves and Lucas, Susan and Valentin, Klaus and Kaplan, Aaron and Martin-Jézéquel, Véronique and Medlin, Linda K and Montsant, Anton and Grigoriev, Igor V and Secq, Marie-Pierre Oudot-Le and Allen, Andrew E and Stanley, Michele and Jorgensen, Richard E and Huysman, Marie J. J and Brownlee, Colin and Napoli, Carolyn and von Dassow, Peter and Maumus, Florian and Mock, Thomas and Jenkins, Bethany D and Shapiro, Harris and Fournet, Jérome and Badger, Jonathan H and Lopez, Pascal J and Heijde, Marc and Detter, J. Chris and Joubert, Yolaine and Beszteri, Bank and Chiovitti, Anthony and Jabbari, Kamel and Petit, Jean-Louis and Sussman, Michael R and Berges, John A and Haruta, Miyoshi and Lindquist, Erica and Willis, Anusuya and Vandepoele, Klaas and Kroth, Peter G and Otillar, Robert P and Rynearson, Tatiana A and De Martino, Alessandra and Coesel, Sacha and Cadoret, Jean-Paul and Jiroutova, Katerina and Grimwood, Jane and Rychlewski, Leszek and Salamov, Asaf and Kuo, Alan and Durkin, Colleen and McGinnis, Karen and La Roche, Julie and Siaut, Magali and Porcel, Betina M and Choi, Chang Jae and Vyverman, Wim and Taylor, Alison R and Martens, Cindy and Rokhsar, Daniel S and Armbrust, E. Virginia and Kröger, Nils and Gruber, Ansgar and Poulsen, Nicole and Bowler, Chris and Katinka, Michael and Obornik, Miroslav and Weissenbach, Jean and Verret, Fréderic and Vardi, Assaf and Maheswari, Uma and Falciatore, Angela and Robison, Matthew and Parker, Micaela Schnitzler and Schmutz, Jeremy and Joint Genome Institute (JGI)
Nature, ISSN 0028-0836, 11/2008, Volume 456, Issue 7219, pp. 239 - 244
Journal Article
Plant Physiology, ISSN 0032-0889, 2/2012, Volume 158, Issue 2, pp. 590 - 600
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 2/2013, Volume 110, Issue 8, pp. 2898 - 2903
Journal Article
Bioinformatics (Oxford, England), 12/2018
Public RNA-Sequencing (RNA-Seq) datasets are a valuable resource for transcriptome analyses, but their accessibility is hindered by the imperfect quality and... 
Journal Article
Plant Physiology, ISSN 0032-0889, 06/2009, Volume 150, Issue 2, pp. 535 - 546
Analysis of gene expression data generated by high-throughput microarray transcript profiling experiments has demonstrated that genes with an overall similar... 
Bioinformatics
Journal Article
BIOINFORMATICS, ISSN 1367-4803, 08/2019, Volume 35, Issue 16, pp. 2880 - 2881
A Summary: Public RNA-Sequencing (RNA-Seq) datasets are a valuable resource for transcriptome analyses, but their accessibility is hindered by the imperfect... 
GENE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SEQUENCE | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY
Journal Article
Plant Physiology, ISSN 0032-0889, 10/2019, Volume 181, Issue 2, pp. 412 - 425
Tools for mapping transcription factor binding sites are evaluated with a protocol to map gene regulatory from open chromatin data sets. Determining where... 
Research Report
Journal Article
The Plant Cell, ISSN 1040-4651, 9/2013, Volume 25, Issue 9, pp. 3472 - 3490
Journal Article
Science, ISSN 0036-8075, 11/2013, Volume 342, Issue 6160, pp. 860 - 863
Journal Article
The Plant Cell, ISSN 1040-4651, 10/2014, Volume 26, Issue 10, pp. 3894 - 3910
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2015, Volume 43, Issue 1, pp. D174 - D180
Journal Article