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1. Full Text Mosaic Analysis with Double Markers Reveals Tumor Cell of Origin in Glioma
by Liu, Chong and Sage, Jonathan C and Miller, Michael R and Verhaak, Roel G.W and Hippenmeyer, Simon and Vogel, Hannes and Foreman, Oded and Bronson, Roderick T and Nishiyama, Akiko and Luo, Liqun and Zong, Hui
Cell (Cambridge), ISSN 0092-8674, 07/2011, Volume 146, Issue 2, pp. 209 - 221
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Neurons - pathology | Astrocytes - pathology | Brain Neoplasms - pathology | Brain Neoplasms - genetics | Molecular Sequence Data | Glioma - embryology | Neural Stem Cells - pathology | Glioma - genetics | Oligodendroglia - pathology | Genes, p53 | Animals | Brain Neoplasms - embryology | Glioma - pathology | Biomarkers | Neoplastic Stem Cells - pathology | Mosaicism | Mice | Mutation | Neurofibromin 1 - genetics | Physiological aspects | Tumor proteins | Gliomas | Analysis | Stem cells | Cancer | Animal models | Mosaics | Glioma | Tumor cells | Brain tumors | Neural stem cells | Malignancy | Gene expression | Glial stem cells | p53 protein | Tumors | Index Medicus
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2. Full Text GlioVis data portal for visualization and analysis of brain tumor expression datasets
by Bowman, Robert L and Wang, Qianghu and Carro, Angel and Verhaak, Roel G.W and Squatrito, Massimo
Neuro-oncology (Charlottesville, Va.), ISSN 1522-8517, 2017, Volume 19, Issue 1, pp. 139 - 141
Oncology | Clinical Neurology | Neurosciences & Neurology | Life Sciences & Biomedicine | Science & Technology | Humans | Brain Neoplasms - pathology | Brain Neoplasms - genetics | Databases, Genetic | Biomedical Research - methods | Statistics as Topic | Internet | Brain Neoplasms - metabolism | Index Medicus | Letter to the Editor
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3. Full Text Toward understanding and exploiting tumor heterogeneity
by Alizadeh, Ash A and Aranda, Victoria and Bardelli, Alberto and Blanpain, Cedric and Bock, Christoph and Borowski, Christine and Caldas, Carlos and Califano, Andrea and Doherty, Michael and Elsner, Markus and Esteller, Manel and Fitzgerald, Rebecca and Korbel, Jan O and Lichter, Peter and Mason, Christopher E and Navin, Nicholas and Pe'Er, Dana and Polyak, Kornelia and Roberts, Charles W M and Siu, Lillian and Snyder, Alexandra and Stower, Hannah and Swanton, Charles and Verhaak, Roel G W and Zenklusen, Jean C and Zuber, Johannes and Zucman-Rossi, Jessica
Nature medicine, ISSN 1078-8956, 08/2015, Volume 21, Issue 8, pp. 846 - 853
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Medicine, Research & Experimental | Science & Technology | Cell Biology | Research & Experimental Medicine | Epigenomics | Neoplasms - genetics | Humans | Tumor Microenvironment | Benchmarking | High-Throughput Nucleotide Sequencing | Neoplasms - pathology | Neoplasms - drug therapy | Epigenetic inheritance | Genetic aspects | Research | Spontaneous generation | Risk factors | Tumors | Conferences | Epigenetics | Cancer | Index Medicus | Epigenètica
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4. Full Text Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma
by Zheng, Siyuan and Cherniack, Andrew D and Dewal, Ninad and Moffitt, Richard A and Danilova, Ludmila and Murray, Bradley A and Lerario, Antonio M and Else, Tobias and Knijnenburg, Theo A and Ciriello, Giovanni and Kim, Seungchan and Assie, Guillaume and Morozova, Olena and Akbani, Rehan and Shih, Juliann and Hoadley, Katherine A and Choueiri, Toni K and Waldmann, Jens and Mete, Ozgur and Robertson, A. Gordon and Wu, Hsin-Ta and Raphael, Benjamin J and Shao, Lina and Meyerson, Matthew and Demeure, Michael J and Beuschlein, Felix and Gill, Anthony J and Sidhu, Stan B and Almeida, Madson Q and Fragoso, Maria C.B.V and Cope, Leslie M and Kebebew, Electron and Habra, Mouhammed A and Whitsett, Timothy G and Bussey, Kimberly J and Rainey, William E and Asa, Sylvia L and Bertherat, Jérôme and Fassnacht, Martin and Wheeler, David A and Zheng, Siyuan and Verhaak, Roel G.W and Giordano, Thomas J and Hammer, Gary D and Cherniack, Andrew D and Dewal, Ninad and Moffitt, Richard A and Danilova, Ludmila and Murray, Bradley A and Lerario, Antonio M and Else, Tobias and Knijnenburg, Theo A and Ciriello, Giovanni and Kim, Seungchan and Assié, Guillaume and Morozova, Olena and Akbani, Rehan and Shih, Juliann and Hoadley, Katherine A and Choueiri, Toni K and Waldmann, Jens and Mete, Ozgur and Robertson, A. Gordon and Wu, Hsin-Tu and Raphael, Benjamin J and Meyerson, Matthew and Demeure, Michael J and Beuschlein, Felix and Gill, Anthony J and Sidhu, Stan B and Almeida, Madson and Barisson Fragoso, Maria Candida and Cope, Leslie M and Kebebew, Electron and Habra, Mouhammed Amir and Whitsett, Timothy G and Bussey, Kimberly J and Rainey, William E and Asa, Sylvia L and Bertherat, Jérôme and Fassnacht, Martin and Wheeler, David A and Benz, Christopher and Ally, Adrian and Balasundaram, Miruna and Bowlby, Reanne and Brooks, Denise and Butterfield, Yaron S.N and Carlsen, Rebecca and Dhalla, Noreen and Guin, Ranabir and Holt, Robert A and Jones, Steven J.M and Kasaian, Katayoon and Lee, Darlene and Li, Haiyan I and Lim, Lynette and Ma, Yussanne and Marra, Marco A and Mayo, Michael and ... and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network
Cancer cell, ISSN 1535-6108, 05/2016, Volume 29, Issue 5, pp. 723 - 736
Oncology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Prognosis | Outcome Assessment (Health Care) | Humans | Middle Aged | Gene Expression Regulation, Neoplastic | Male | Young Adult | Adrenocortical Carcinoma - pathology | DNA Methylation | Aged, 80 and over | Adult | Female | Genomics - methods | Child | Genetic Predisposition to Disease - genetics | Adrenocortical Carcinoma - genetics | Gene Expression Profiling - methods | Adrenal Cortex Neoplasms - pathology | Adrenocortical Carcinoma - therapy | Genome, Human - genetics | Adrenal Cortex Neoplasms - genetics | Adrenal Cortex Neoplasms - therapy | Disease-Free Survival | Adolescent | Aged | Mutation | Genetic aspects | Carcinoma | Analysis | Cancer | Index Medicus
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5. Full Text Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer
by Du, Zhou and Fei, Teng and Verhaak, Roel G W and Su, Zhen and Zhang, Yong and Brown, Myles and Chen, Yiwen and Liu, X Shirley
Nature structural & molecular biology, ISSN 1545-9993, 07/2013, Volume 20, Issue 7, pp. 908 - 913
Biochemistry & Molecular Biology | Biophysics | Life Sciences & Biomedicine | Science & Technology | Cell Biology | DNA, Intergenic | Adenocarcinoma - pathology | Prognosis | Oligonucleotide Array Sequence Analysis | Exons | Humans | Molecular Sequence Data | Male | Genes, Overlapping | Molecular Targeted Therapy | Biomarkers, Tumor | RNA, Long Noncoding - analysis | RNA, Neoplasm - analysis | Prostatic Neoplasms - genetics | Neoplasms - genetics | Conserved Sequence | Adenocarcinoma - genetics | Gene Expression Regulation, Neoplastic - genetics | Amino Acid Sequence | DNA Probes | Prostatic Neoplasms - pathology | Introns | Kaplan-Meier Estimate | Models, Molecular | Neoplasms - mortality | Gene Expression Profiling - methods | Neoplasms - classification | Gene Dosage | RNA, Long Noncoding - genetics | RNA, Long Noncoding - classification | Sequence Homology, Amino Acid | Sequence Alignment | Cell Line, Tumor - chemistry | RNA, Neoplasm - genetics | Protein Conformation | Physiological aspects | Genetic aspects | Research | RNA | Cancer | Biomedical research | RNA-protein interactions | Ribonucleic acid--RNA | Molecular biology | Index Medicus | DNA probes
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6. Full Text Extrachromosomal oncogene amplification in tumour pathogenesis and evolution
by Verhaak, Roel G. W and Bafna, Vineet and Mischel, Paul S
Nature reviews. Cancer, ISSN 1474-175X, 05/2019, Volume 19, Issue 5, pp. 283 - 288
Life Sciences & Biomedicine | Oncology | Science & Technology | Oncogenes - genetics | Animals | Tumor Microenvironment - genetics | Neoplasms - genetics | Chromosomes - genetics | Humans | DNA Copy Number Variations - genetics | Gene Amplification - genetics | Neoplasms - pathology | Gene amplification | Usage | Genetic aspects | Research | Extrachromosomal DNA | Tumors | Amplification | Heterogeneity | Offspring | Pathogenesis | Copy number | Biological evolution | Deoxyribonucleic acid--DNA | Cancer | Index Medicus
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7. Full Text ZFHX4 Interacts with the NuRD Core Member CHD4 and Regulates the Glioblastoma Tumor-Initiating Cell State
by Chudnovsky, Yakov and Kim, Dohoon and Zheng, Siyuan and Whyte, Warren A and Bansal, Mukesh and Bray, Mark-Anthony and Gopal, Shuba and Theisen, Matthew A and Bilodeau, Steve and Thiru, Prathapan and Muffat, Julien and Yilmaz, Omer H and Mitalipova, Maya and Woolard, Kevin and Lee, Jeongwu and Nishimura, Riko and Sakata, Nobuo and Fine, Howard A and Carpenter, Anne E and Silver, Serena J and Verhaak, Roel G.W and Califano, Andrea and Young, Richard A and Ligon, Keith L and Mellinghoff, Ingo K and Root, David E and Sabatini, David M and Hahn, William C and Chheda, Milan G
Cell reports (Cambridge), ISSN 2211-1247, 01/2014, Volume 6, Issue 2, pp. 313 - 324
Life Sciences & Biomedicine | Science & Technology | Cell Biology | Autoantigens - metabolism | Homeodomain Proteins - metabolism | Humans | Carcinogenesis - genetics | Gene Expression Regulation, Neoplastic | Mi-2 Nucleosome Remodeling and Deacetylase Complex - genetics | Mi-2 Nucleosome Remodeling and Deacetylase Complex - metabolism | Transcription Factors - genetics | Autoantigens - genetics | Carcinogenesis - metabolism | Homeodomain Proteins - genetics | Transcription Factors - metabolism | Animals | Glioblastoma - genetics | Cell Line, Tumor | Protein Binding | Glioblastoma - metabolism | Mice, Inbred NOD | Transcription, Genetic | Index Medicus
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8. Full Text Inferring tumour purity and stromal and immune cell admixture from expression data
by Yoshihara, Kosuke and Shahmoradgoli, Maria and Martínez, Emmanuel and Vegesna, Rahulsimham and Kim, Hoon and Torres-Garcia, Wandaliz and Treviño, Victor and Shen, Hui and Laird, Peter W and Levine, Douglas A and Carter, Scott L and Getz, Gad and Stemke-Hale, Katherine and Mills, Gordon B and Verhaak, Roel G.W
Nature communications, ISSN 2041-1723, 2013, Volume 4, Issue 1, pp. 2612 - 2612
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Gene Library | Oligonucleotide Array Sequence Analysis | Cell Separation | Humans | Stromal Cells - metabolism | Transcriptome | Gene Expression Profiling | DNA Copy Number Variations | Algorithms | Neoplasms - genetics | Neoplasms - immunology | Sensitivity and Specificity | Female | High-Throughput Nucleotide Sequencing | Software | Genome, Human | Neoplasms - pathology | Leukocytes - metabolism | Research Design | Stromal Cells - cytology | Leukocytes - cytology | Index Medicus
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