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Bioinformatics (Oxford, England), ISSN 1367-4811, 02/2015, Volume 31, Issue 12, pp. 2032 - 2034
Journal Article
Genome Research, ISSN 1088-9051, 02/2009, Volume 19, Issue 2, pp. 327 - 335
Journal Article
Bioinformatics, ISSN 1367-4803, 07/2012, Volume 28, Issue 13, pp. 1684 - 1691
Motivation: Accurate alignment of large numbers of sequences is demanding and the computational burden is further increased by downstream analyses depending on... 
MAXIMUM-LIKELIHOOD | PLACEMENT | TREES | ERRORS | POSITIVE SELECTION | MODELS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | GENERATION | INSERTIONS | READS | Sequence Alignment - methods | Sequence Analysis, Protein | Software | Algorithms | Phylogeny | Sequence Analysis, DNA - methods | Original Papers
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2011, Volume 39, Issue 1, pp. D800 - D806
The Ensembl project (http://www.ensembl.org) seeks to enable genomic science by providing high quality, integrated annotation on chordate and selected... 
DATABASE | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENOME | RESOURCE | Genetic Variation | Animals | Genomics | Humans | Molecular Sequence Annotation | Regulatory Sequences, Nucleic Acid | Databases, Genetic | Rats | Mice | Software | Zebrafish - genetics
Journal Article
by Lindblad-Toh, Kerstin and Garber, Manuel and Zuk, Or and Lin, Michael F and Parker, Brian J and Washietl, Stefan and Kheradpour, Pouya and Ernst, Jason and Jordan, Gregory and Mauceli, Evan and Ward, Lucas D and Lowe, Craig B and Holloway, Alisha K and Clamp, Michele and Gnerre, Sante and Alföldi, Jessica and Beal, Kathryn and Chang, Jean and Clawson, Hiram and Cuff, James and Di Palma, Federica and Fitzgerald, Stephen and Flicek, Paul and Guttman, Mitchell and Hubisz, Melissa J and Jaffe, David B and Jungreis, Irwin and Kent, W. James and Kostka, Dennis and Lara, Marcia and Martins, Andre L and Massingham, Tim and Moltke, Ida and Raney, Brian J and Rasmussen, Matthew D and Robinson, Jim and Stark, Alexander and Vilella, Albert J and Wen, Jiayu and Xie, Xiaohui and Zody, Michael C and Worley, Kim C and Kovar, Christie L and Muzny, Donna M and Gibbs, Richard A and Warren, Wesley C and Mardis, Elaine R and Weinstock, George M and Wilson, Richard K and Birney, Ewan and Margulies, Elliott H and Herrero, Javier and Green, Eric D and Haussler, David and Siepel, Adam and Goldman, Nick and Pollard, Katherine S and Pedersen, Jakob S and Lander, Eric S and Kellis, Manolis and Baldwin, Jen and Bloom, Toby and Chin, Chee Whye and Heiman, Dave and Nicol, Robert and Nusbaum, Chad and Young, Sarah and Wilkinson, Jane and Cree, Andrew and Dihn, Huyen H and Fowler, Gerald and Jhangiani, Shalili and Joshi, Vandita and Lee, Sandra and Lewis, Lora R and Nazareth, Lynne V and Okwuonu, Geoffrey and Santibanez, Jireh and Delehaunty, Kim and Dooling, David and Fronik, Catrina and Fulton, Lucinda and Fulton, Bob and Graves, Tina and Minx, Patrick and Sodergren, Erica and Broad Inst and Washington Univ and Baylor Coll Med and Genome Institute at Washington University and Broad Institute Sequencing Platform and Whole Genome Assembly Team and Baylor College of Medicine Human Genome Sequencing Center Sequencing Team and Medicinska fakulteten and Science for Life Laboratory, SciLifeLab and Medicinska och farmaceutiska vetenskapsområdet and Institutionen för medicinsk biokemi och mikrobiologi and Uppsala universitet
Nature, ISSN 0028-0836, 10/2011, Volume 478, Issue 7370, pp. 476 - 482
Journal Article
Database, ISSN 1758-0463, 2016, Volume 2016, p. bav096
Evolution provides the unifying framework with which to understand biology. The coherent investigation of genic and genomic data often requires comparative... 
SUBSTITUTION | EVOLUTION | DATABASE | SEQUENCE ALIGNMENT | MATHEMATICAL & COMPUTATIONAL BIOLOGY | DUPLICATION | IDENTIFICATION | CONSTRAINT | MULTIPLE | VERTEBRATE | GENE-FUNCTION
Journal Article
Nature, ISSN 0028-0836, 03/2012, Volume 483, Issue 7388, pp. 169 - 175
Journal Article
by Warren, Wesley C and Clayton, David F and Ellegren, Hans and Arnold, Arthur P and Hillier, Ladeana W and Künstner, Axel and Searle, Steve and White, Simon and Vilella, Albert J and Fairley, Susan and Heger, Andreas and Kong, Lesheng and Ponting, Chris P and Jarvis, Erich D and Mello, Claudio V and Minx, Pat and Lovell, Peter and Velho, Tarciso A. F and Ferris, Margaret and Balakrishnan, Christopher N and Sinha, Saurabh and Blatti, Charles and London, Sarah E and Li, Yun and Lin, Ya-Chi and George, Julia and Sweedler, Jonathan and Southey, Bruce and Gunaratne, Preethi and Watson, Michael and Nam, Kiwoong and Backström, Niclas and Smeds, Linnea and Nabholz, Benoit and Itoh, Yuichiro and Whitney, Osceola and Pfenning, Andreas R and Howard, Jason and Völker, Martin and Skinner, Bejamin M and Griffin, Darren K and Ye, Liang and McLaren, William M and Flicek, Paul and Quesada, Victor and Velasco, Gloria and Lopez-Otin, Carlos and Puente, Xose S and Olender, Tsviya and Lancet, Doron and Smit, Arian F. A and Hubley, Robert and Konkel, Miriam K and Walker, Jerilyn A and Batzer, Mark A and Gu, Wanjun and Pollock, David D and Chen, Lin and Cheng, Ze and Eichler, Evan E and Stapley, Jessica and Slate, Jon and Ekblom, Robert and Birkhead, Tim and Burke, Terry and Burt, David and Scharff, Constance and Adam, Iris and Richard, Hugues and Sultan, Marc and Soldatov, Alexey and Lehrach, Hans and Edwards, Scott V and Yang, Shiaw-Pyng and Li, Xiaoching and Graves, Tina and Fulton, Lucinda and Nelson, Joanne and Chinwalla, Asif and Hou, Shunfeng and Mardis, Elaine R and Wilson, Richard K and Teknisk-naturvetenskapliga vetenskapsområdet and Evolutionsbiologi and Biologiska sektionen and Uppsala universitet and Institutionen för ekologi och genetik
Nature, ISSN 0028-0836, 04/2010, Volume 464, Issue 7289, pp. 757 - 762
Journal Article
Bioinformatics, ISSN 1367-4803, 01/2015, Volume 31, Issue 12, p. 2032
Sambamba is a high-performance robust tool and library for working with SAM, BAM and CRAM sequence alignment files; the most common file formats for aligned... 
Journal Article
by Peter Arensburger and Karine Megy and Robert M. Waterhouse and Jenica Abrudan and Paolo Amedeo and Beatriz Antelo and Lyric Bartholomay and Shelby Bidwell and Elisabet Caler and Francisco Camara and Corey L. Campbell and Kathryn S. Campbell and Claudio Casola and Marta T. Castro and Ishwar Chandramouliswaran and Sinéad B. Chapman and Scott Christley and Javier Costas and Eric Eisenstadt and Cedric Feschotte and Claire Fraser-Liggett and Roderic Guigo and Brian Haas and Martin Hammond and Bill S. Hansson and Janet Hemingway and Sharon R. Hill and Clint Howarth and Rickard Ignell and Ryan C. Kennedy and Chinnappa D. Kodira and Neil F. Lobo and Chunhong Mao and George Mayhew and Kristin Michel and Akio Mori and Nannan Liu and Horado Naveira and Vishvanath Nene and Nam Nguyen and Matthew D. Pearson and Ellen J. Pritham and Daniela Puiu and Yumin Qi and Hilary Ranson and Jose M. C. Ribeiro and Hugh M. Roberston and David W. Severson and Martin Shumway and Mario Stanke and Robert L. Strausberg and Cheng Sun and Granger Sutton and Zhijian (Jake) Tu and Jose Manuel C. Tubio and Maria F. Unger and Dana L. Vanlandingham and Albert J. Vilella and Owen White and Jared R. White and Charles S. Wondji and Jennifer Wortman and Evgeny M. Zdobnov and Bruce Birren and Bruce M. Christensen and Frank H. Collins and Anthony Cornel and George Dimopoulos and Linda I. Hannick and Stephen Higgs and Gregory C. Lanzaro and Daniel Lawson and Norman H. Lee and Marc A. T. Muskavitch and Alexander S. Raikhel and Peter W. Atkinson and Sveriges lantbruksuniversitet
Science, ISSN 0036-8075, 10/2010, Volume 330, Issue 6000, pp. 86 - 88
Journal Article