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by Parfenov, M and Pedamallu, C. S and Gehlenborg, N and Freeman, S. S and Danilova, L and Bristow, C. A and Lee, S and Hadjipanayis, A. G and Ivanova, E. V and Wilkerson, M. D and Protopopov, A and Yang, L and Seth, S and Song, X and Tang, J and Ren, X and Zhang, J and Pantazi, A and Santoso, N and Xu, A. W and Mahadeshwar, H and Wheeler, D. A and Haddad, R. I and Jung, J and Ojesina, A. I and Issaeva, N and Yarbrough, W. G and Hayes, D. N and Grandis, J. R and El-Naggar, A. K and Meyerson, M and Park, P. J and Chin, L and Seidman, J. G and Hammerman, P. S and Kucherlapati, R and Ally, A and Balasundaram, M and Birol, I and Bowlby, R and Butterfield, Y. S. N and Carlsen, R and Cheng, D and Chu, A and Dhalla, N and Guin, R and Holt, R. A and Jones, S. J. M and Lee, D and Li, H. I and Marra, M. A and Mayo, M and Moore, R. A and Mungall, A. J and Robertson, A. G and Schein, J. E and Sipahimalani, P and Tam, A and Thiessen, N and Wong, T and Mahadeshwar, H. S and Haseley, P and Zeng, D and Bristow, C and Hadjipanayis, A and Seidman, J and Akbani, R and Casasent, T and Liu, W and Lu, Y and Mills, G and Motter, T and Weinstein, J and Diao, L and Wang, J and Fan, Y. H and Liu, J and Wang, K and Auman, J. T and Balu, S and Bodenheimer, T and Buda, E and Hoadley, K. A and Hoyle, A. P and Jefferys, S. R and Jones, C. D and Kimes, P. K and Marron, J. S and Meng, S and Mieczkowski, P. A and Mose, L. E and Parker, J. S and Perou, C. M and Prins, J. F and Roach, J and Shi, Y and Simons, J. V and Singh, D and Soloway, M. G and Tan, D and ... and the Cancer Genome Atlas Network and Canc Genome Atlas Network and Cancer Genome Atlas Network
Proceedings of the National Academy of Sciences - PNAS, ISSN 1091-6490, 2014, Volume 111, Issue 43, pp. 15544 - 15549
Journal Article
by Gao, Qingsong and Mutharasu, Gnanavel and Jayasinghe, Reyka G and Cao, Song and Reynolds, Sheila M and Wyczalkowski, Matthew A and Sun, Sam Q and Chen, Ken and Lazar, Alexander J and Wendl, Michael C and Van Tine, Brian A and Ding, Li and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Yang, Liming and Zenklusen, Jean C and Zhang, Jiashan (Julia) and Chudamani, Sudha and Naresh, Rashi and Pihl, Todd and Sun, Qiang and Wan, Yunhu and Wu, Ye and DeFreitas, Timothy and Heiman, David I and Lin, Pei and Noble, Michael S and Saksena, Gordon and Voet, Doug and Zhang, Hailei and Bernard, Brady and Dhankani, Varsha and Knijnenburg, Theo and Kramer, Roger and Leinonen, Kalle and Miller, Michael and Thorsson, Vesteinn and Zhang, Wei and Hegde, Apurva M and Ju, Zhenlin and Li, Jun and Liang, Han and Ling, Shiyun and Liu, Wenbin and Mills, Gordon B and Rao, Arvind and Ryan, Michael and Zhang, Jiexin and Chakravarty, Debyani and Gao, Jianjiong and Gross, Benjamin E and Heins, Zachary J and Kundra, Ritika and La, Konnor and Luna, Augustin and Nissan, Moriah G and Reznik, Ed and Sander, Chris and Sumer, S. Onur and Sun, Yichao and Zhang, Hongxin and Anur, Pavana and Peto, Myron and Spellman, Paul and Benz, Christopher and Stuart, Joshua M and Yau, Christina and Hayes, D. Neil and Parker, Joel S and Balasundaram, Miruna and Bowlby, Reanne and Brooks, Denise and Carlsen, Rebecca and Dhalla, Noreen and Holt, Robert and Jones, Steven J.M and Kasaian, Katayoon and Ma, Yussanne and Mayo, Michael and Mungall, Andrew J and Mungall, Karen and Robertson, A. Gordon and Sadeghi, Sara and Schein, Jacqueline E and Sipahimalani, Payal and Tam, Angela and Tse, Kane and Wong, Tina and Berger, Ashton C and Gabriel, Stacey B and Ha, Gavin and Meyerson, Matthew and Kucherlapati, Melanie H and Danilova, Ludmila and Bootwalla, Moiz S and Maglinte, Dennis T and ... and The Fusion Analysis Working Group and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network and Fusion Anal Working Grp and Fusion Analysis Working Group and Cancer Genome Atlas Research Network
Cell reports (Cambridge), ISSN 2211-1247, 04/2018, Volume 23, Issue 1, pp. 227 - 238.e3
Gene fusions represent an important class of somatic alterations in cancer. We systematically investigated fusions in 9,624 tumors across 33 cancer types using... 
fusion | cancer | translocation | RNA | gene fusions | Biochemistry, Genetics and Molecular Biology(all) | BREAST-CANCER | PATHWAYS | BCR-ABL | GENES | SQUAMOUS-CELL CARCINOMA | MYELOID-LEUKEMIA | LANDSCAPES | MUTATIONS | GENOMIC CHARACTERIZATION | TUMORS | CELL BIOLOGY
Journal Article
by Shen, Hui and Shih, Juliann and Hollern, Daniel P and Wang, Linghua and Bowlby, Reanne and Tickoo, Satish K and Thorsson, Vésteinn and Mungall, Andrew J and Newton, Yulia and Hegde, Apurva M and Armenia, Joshua and Sánchez-Vega, Francisco and Pluta, John and Pyle, Louise C and Mehra, Rohit and Reuter, Victor E and Godoy, Guilherme and Jones, Jeffrey and Shelley, Carl S and Feldman, Darren R and Vidal, Daniel O and Lessel, Davor and Kulis, Tomislav and Cárcano, Flavio M and Leraas, Kristen M and Lichtenberg, Tara M and Brooks, Denise and Cherniack, Andrew D and Cho, Juok and Heiman, David I and Kasaian, Katayoon and Liu, Minwei and Noble, Michael S and Xi, Liu and Zhang, Hailei and Zhou, Wanding and ZenKlusen, Jean C and Hutter, Carolyn M and Felau, Ina and Zhang, Jiashan and Schultz, Nikolaus and Getz, Gad and Meyerson, Matthew and Stuart, Joshua M and Akbani, Rehan and Wheeler, David A and Laird, Peter W and Nathanson, Katherine L and Cortessis, Victoria K and Hoadley, Katherine A and Wheeler, David and Hughes, Daniel and Covington, Kyle and Jayaseelan, Joy C and Korchina, Viktoriya and Lewis, Lora and Hu, Jianhong and Doddapaneni, HarshaVardhan and Muzny, Donna and Gibbs, Richard and Hollern, Daniel and Vincent, Benjamin G and Chai, Shengjie and Smith, Christof C and Auman, J. Todd and Shi, Yan and Meng, Shaowu and Skelly, Tara and Tan, Donghui and Veluvolu, Umadevi and Mieczkowski, Piotr A and Jones, Corbin D and Wilkerson, Matthew D and Balu, Saianand and Bodenheimer, Tom and Hoyle, Alan P and Jefferys, Stuart R and Mose, Lisle E and Simons, Janae V and Soloway, Matthew G and Roach, Jeffrey and Parker, Joel S and Hayes, D. Neil and Perou, Charles M and Saksena, Gordon and Cibulskis, Carrie and Schumacher, Steven E and Beroukhim, Rameen and Gabriel, Stacey B and Ally, Adrian and Balasundaram, Miruna and Carlsen, Rebecca and Cheung, Dorothy and Chuah, Eric and Dhalla, Noreen and Holt, Robert A and Jones, Steven J.M and Ma, Yussanne and Mayo, Michael and Moore, Richard A and ... and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network
Cell reports (Cambridge), ISSN 2211-1247, 2018, Volume 23, Issue 11, pp. 3392 - 3406
Journal Article
by Chiu, Hua-Sheng and Somvanshi, Sonal and Patel, Ektaben and Singh, Vivek P and Zorman, Barry and Patil, Sagar L and Chatterjee, Sujash S and Sumazin, Pavel and Demchok, John A and Kasapi, Melpomeni and Sofia, Heidi J and Tarnuzzer, Roy and Wang, Zhining and Yang, Liming and Zenklusen, Jean C and Zhang, Jiashan (Julia) and Chudamani, Sudha and Liu, Jia and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Sun, Qiang and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and Getz, Gad and Heiman, David I and Lawrence, Michael S and Lin, Pei and Meier, Sam and Noble, Michael S and Saksena, Gordon and Voet, Doug and Zhang, Hailei and Chambwe, Nyasha and Dhankani, Varsha and Knijnenburg, Theo and Kramer, Roger and Liu, Yuexin and Miller, Michael and Reynolds, Sheila and Thorsson, Vesteinn and Zhang, Wei and Akbani, Rehan and Hegde, Apurva M and Ju, Zhenlin and Korkut, Anil and Li, Jun and Ling, Shiyun and Liu, Wenbin and Mills, Gordon B and Wang, Jing and Weinstein, John N and Abeshouse, Adam and Chakravarty, Debyani and Chatila, Walid K and de Bruijn, Ino and Gross, Benjamin E and Kundra, Ritika and La, Konnor and Ladanyi, Marc and Ochoa, Angelica and Phillips, Sarah M and Sanchez-Vega, Francisco and Sander, Chris and Sumer, S. Onur and Taylor, Barry S and Zhang, Hongxin and Anur, Pavana and Peto, Myron and Spellman, Paul and Benz, Christopher and Stuart, Joshua M and Yau, Christina and Wilkerson, Matthew D and Ally, Adrian and Balasundaram, Miruna and Bowlby, Reanne and Brooks, Denise and Carlsen, Rebecca and Dhalla, Noreen and Jones, Steven J.M and Kasaian, Katayoon and Lee, Darlene and Ma, Yussanne and Marra, Marco A and Mayo, Michael and Mungall, Andrew J and Robertson, A. Gordon and Schein, Jacqueline E and Thiessen, Nina and Tse, Kane and Wong, Tina and Berger, Ashton C and Beroukhim, Rameen and Cherniack, Andrew D and Gabriel, Stacey B and Gao, Galen F and ... and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network
Cell reports (Cambridge), ISSN 2211-1247, 04/2018, Volume 23, Issue 1, pp. 297 - 312.e12
Journal Article
by Abeshouse, Adam and Ahn, Jaeil and Akbani, Rehan and Ally, Adrian and Amin, Samirkumar and Andry, Christopher D and Annala, Matti and Aprikian, Armen and Armenia, Joshua and Arora, Arshi and Auman, J. Todd and Balasundaram, Miruna and Balu, Saianand and Barbieri, Christopher E and Bauer, Thomas and Benz, Christopher C and Bergeron, Alain and Beroukhim, Rameen and Berrios, Mario and Bivol, Adrian and Bodenheimer, Tom and Boice, Lori and Bootwalla, Moiz S and Borges dos Reis, Rodolfo and Boutros, Paul C and Bowen, Jay and Bowlby, Reanne and Boyd, Jeffrey and Bradley, Robert K and Breggia, Anne and Brimo, Fadi and Bristow, Christopher A and Brooks, Denise and Broom, Bradley M and Bryce, Alan H and Bubley, Glenn and Burks, Eric and Butterfield, Yaron S.N and Button, Michael and Canes, David and Carlotti, Carlos G and Carlsen, Rebecca and Carmel, Michel and Carroll, Peter R and Carter, Scott L and Cartun, Richard and Carver, Brett S and Chan, June M and Chang, Matthew T and Chen, Yu and Cherniack, Andrew D and Chevalier, Simone and Chin, Lynda and Cho, Juok and Chu, Andy and Chuah, Eric and Chudamani, Sudha and Cibulskis, Kristian and Ciriello, Giovanni and Clarke, Amanda and Cooperberg, Matthew R and Corcoran, Niall M and Costello, Anthony J and Cowan, Janet and Crain, Daniel and Curley, Erin and David, Kerstin and Demchok, John A and Demichelis, Francesca and Dhalla, Noreen and Dhir, Rajiv and Doueik, Alexandre and Drake, Bettina and Dvinge, Heidi and Dyakova, Natalya and Felau, Ina and Ferguson, Martin L and Frazer, Scott and Freedland, Stephen and Fu, Yao and Gabriel, Stacey B and Gao, Jianjiong and Gardner, Johanna and Gastier-Foster, Julie M and Gehlenborg, Nils and Gerken, Mark and Gerstein, Mark B and Getz, Gad and Godwin, Andrew K and Gopalan, Anuradha and Graefen, Markus and Graim, Kiley and Gribbin, Thomas and Guin, Ranabir and Gupta, Manaswi and Hadjipanayis, Angela and Haider, Syed and Hamel, Lucie and Hayes, D. Neil and Heiman, David I and ... and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network
Cell (Cambridge), ISSN 0092-8674, 2015, Volume 163, Issue 4, pp. 1011 - 1025
Journal Article
by Farshidfar, Farshad and Zheng, Siyuan and Gingras, Marie-Claude and Newton, Yulia and Shih, Juliann and Robertson, A. Gordon and Hinoue, Toshinori and Hoadley, Katherine A and Gibb, Ewan A and Roszik, Jason and Covington, Kyle R and Wu, Chia-Chin and Shinbrot, Eve and Stransky, Nicolas and Hegde, Apurva and Yang, Ju Dong and Reznik, Ed and Sadeghi, Sara and Pedamallu, Chandra Sekhar and Ojesina, Akinyemi I and Hess, Julian M and Auman, J. Todd and Rhie, Suhn K and Bowlby, Reanne and Borad, Mitesh J and Zhu, Andrew X and Stuart, Josh M and Sander, Chris and Akbani, Rehan and Cherniack, Andrew D and Deshpande, Vikram and Mounajjed, Taofic and Foo, Wai Chin and Torbenson, Michael S and Kleiner, David E and Laird, Peter W and Wheeler, David A and McRee, Autumn J and Bathe, Oliver F and Andersen, Jesper B and Bardeesy, Nabeel and Roberts, Lewis R and Kwong, Lawrence N and Allotey, Loretta K and Ally, Adrian and Alvaro, Domenico and Appelbaum, Elizabeth L and Arora, Arshi and Balasundaram, Miruna and Balu, Saianand and Baylin, Stephen B and Beroukhim, Rameen and Berrios, Mario and Bodenheimer, Tom and Boice, Lori and Bootwalla, Moiz S and Bowen, Jay and Bragazzi, Maria Consiglia and Brooks, Denise and Cardinale, Vincenzo and Carlsen, Rebecca and Carpino, Guido and Carvalho, Andre L and Chaiteerakij, Roongruedee and Chandan, Vishal C and Chin, Lynda and Cho, Juok and Choe, Gina and Chuah, Eric and Chudamani, Sudha and Cibulskis, Carrie and Cordes, Matthew G and Crain, Daniel and Curley, Erin and De Rose, Agostino Maria and Defreitas, Timothy and Demchok, John A and Dhalla, Noreen and Ding, Li and Evason, Kimberley and Felau, Ina and Ferguson, Martin L and Franchitto, Antonio and Frazer, Scott and Fronick, Catrina C and Fulton, Lucinda A and Fulton, Robert S and Gabriel, Stacey B and Gardner, Johanna and Gastier-Foster, Julie M and Gaudio, Eugenio and Gehlenborg, Nils and Genovese, Giannicola and Gerken, Mark and Getz, Gad and Giama, Nasra H and Gibbs, Richard A and Giuliante, Felice and Grazi, Gian Luca and Hayes, D. Neil and ... and The Cancer Genome Atlas Network and Canc Genome Atlas Network and Cancer Genome Atlas Network
Cell reports (Cambridge), ISSN 2211-1247, 2017, Volume 19, Issue 13, pp. 2878 - 2880
Cholangiocarcinoma (CCA) is an aggressive malignancy of the bile ducts, with poor prognosis and limited treatment options. Here, we describe the integrated... 
CELL BIOLOGY
Journal Article