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science & technology (28) 28
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1. Full Text The UK Biobank resource with deep phenotyping and genomic data
by Bycroft, Clare and Freeman, Colin and Petkova, Desislava and Band, Gavin and Elliott, Lloyd T and Sharp, Kevin and Motyer, Allan and Vukcevic, Damjan and Delaneau, Olivier and O’Connell, Jared and Cortes, Adrian and Welsh, Samantha and Young, Alan and Effingham, Mark and McVean, Gil and Leslie, Stephen and Allen, Naomi and Donnelly, Peter and Marchini, Jonathan
Nature (London), ISSN 0028-0836, 10/2018, Volume 562, Issue 7726, pp. 203 - 209
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Brain - diagnostic imaging | Life Style | Biomarkers - urine | Genomics | Humans | Middle Aged | Databases, Genetic | Male | Haplotypes - genetics | Adult | Female | Databases, Factual | Quality Control | Genome-Wide Association Study | Major Histocompatibility Complex - genetics | United Kingdom | Biomarkers - blood | Continental Population Groups - genetics | Body Height - genetics | Phenotype | Alleles | Family | Aged | Electronic Health Records | Cohort Studies | Human genome | Genetic research | Genotype | Research | Genetic screening | Methods | Data entry | Haplotypes | Neuroimaging | Brain | Multiple sclerosis | Nuclear magnetic resonance--NMR | Laboratories | Medical records | Cardiovascular disease | Genomes | Datasets | Consortia | Genotype & phenotype | Genetic analysis | Population | Bioindicators | Genotypes | Deoxyribonucleic acid--DNA | Urine | Antigens | Population structure | White blood cells | Phenotyping | Biomarkers | Histocompatibility antigen HLA | Diabetes | Index Medicus | Genome-wide association studies | Genome | Population genetics
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2. Full Text Multi‐output Gaussian processes for species distribution modelling
by Ingram, Martin and Vukcevic, Damjan and Golding, Nick and O'Hara, Robert B
Methods in ecology and evolution, ISSN 2041-210X, 12/2020, Volume 11, Issue 12, pp. 1587 - 1598
multi‐species modelling | species distribution models | Gaussian process | multi-species modelling | Environmental Sciences & Ecology | Ecology | Life Sciences & Biomedicine | Science & Technology | Geographical distribution | Datasets | Learning algorithms | Prediction models | Graphics processing units | Data sets | Machine learning | Regression analysis | Rare species
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3. Full Text Bayesian refinement of association signals for 14 loci in 3 common diseases
by Maller, Julian B and McVean, Gilean and Byrnes, Jake and Vukcevic, Damjan and Palin, Kimmo and Su, Zhan and Howson, Joanna M. M and Auton, Adam and Myers, Simon and Morris, Andrew and Pirinen, Matti and Brown, Matthew A and Burton, Paul R and Caulfield, Mark J and Compston, Alastair and Farrall, Martin and Hall, Alistair S and Hattersley, Andrew T and Hill, Adrian V. S and Mathew, Christopher G and Pembrey, Marcus and Satsangi, Jack and Stratton, Michael R and Worthington, Jane and Craddock, Nick and Hurles, Matthew and Ouwehand, Willem and Parkes, Miles and Rahman, Nazneen and Duncanson, Audrey and Todd, John A and Kwiatkowski, Dominic P and Samani, Nilesh J and Gough, Stephen C. L and McCarthy, Mark I and Deloukas, Panagiotis and Donnelly, Peter and Wellcome Trust Case Control Consor and Wellcome Trust Case Control Consortium and The Wellcome Trust Case Control Consortium
Nature genetics, ISSN 1061-4036, 12/2012, Volume 44, Issue 12, pp. 1294 - 1301
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Genetics of eukaryotes. Biological and molecular evolution | Genetic Predisposition to Disease | Genome-Wide Association Study | Transcription Factor 7-Like 2 Protein - genetics | Diabetes Mellitus, Type 2 - genetics | Humans | Alpha-Ketoglutarate-Dependent Dioxygenase FTO | CTLA-4 Antigen - genetics | Genetic Loci | Transcription Factors - genetics | Genes, p16 | Homeodomain Proteins - genetics | Cyclin-Dependent Kinase 5 - genetics | Graves Disease - genetics | Proteins - genetics | Cyclin-Dependent Kinase Inhibitor p15 - genetics | tRNA Methyltransferases | Bayes Theorem | Coronary Artery Disease - genetics | Polymorphism, Single Nucleotide | Statistical analysis | Biomedical research | Disease | Thyroid diseases | Probability | Genomes | Gene expression | Experiments | Studies | Confidence intervals | Genetics | Diabetes | Methods | Index Medicus
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4. Full Text Bayesian Test for Colocalisation between Pairs of Genetic Association Studies Using Summary Statistics
by Giambartolomei, Claudia and Vukcevic, Damjan and Schadt, Eric E and Franke, Lude and Hingorani, Aroon D and Wallace, Chris and Plagnol, Vincent
PLoS genetics, ISSN 1553-7390, 05/2014, Volume 10, Issue 5, pp. e1004383 - e1004383
MULTIPLE COMMON | PROTEIN | CHOLESTEROL | GENOTYPE IMPUTATION | EXPRESSION QTL | SIGNALS | RISK VARIANTS | TRAITS | GENOME-WIDE ASSOCIATION | CELIAC-DISEASE | Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Genome-Wide Association Study | Sample Size | Humans | Bayes Theorem | Bayesian statistical decision theory | Usage | Genome-wide association studies | Statistical methods | Methods | Index Medicus | Quantitative Biology - Genomics | Medical research | Statistical analysis | Biomedical research | Disease | Probability | Lipids | Genomes | Gene expression | Statistics | Meta-analysis | Studies | Biomarkers | Gene loci
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5. Full Text Bayesian analysis of genetic association across tree-structured routine healthcare data in the UK Biobank
by Cortes, Adrian and Dendrou, Calliope A and Motyer, Allan and Jostins, Luke and Vukcevic, Damjan and Dilthey, Alexander and Donnelly, Peter and Leslie, Stephen and Fugger, Lars and McVean, Gil
Nature genetics, ISSN 1061-4036, 09/2017, Volume 49, Issue 9, pp. 1311 - 1318
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Health Information Systems - statistics & numerical data | Genetic Predisposition to Disease - genetics | Humans | Middle Aged | Logistic Models | Male | United Kingdom | Genome-Wide Association Study - statistics & numerical data | HLA Antigens - genetics | International Classification of Diseases - classification | Genetic Association Studies - statistics & numerical data | Alleles | Bayes Theorem | Adult | Female | Aged | Polymorphism, Single Nucleotide | Delivery of Health Care - classification | Delivery of Health Care - statistics & numerical data | International Classification of Diseases - statistics & numerical data | Cluster Analysis | Bayesian statistical decision theory | Genetic research | Usage | Information management | Research | Health care | Lupus | Haplotypes | Multiple sclerosis | Statistical analysis | Probability | Structural hierarchy | Studies | Inflammatory bowel disease | Genetic effects | Precision medicine | Dimensional analysis | Classification | Genetics | Histocompatibility antigen HLA | Diabetes | Dynamic programming | Random variables | Diagnosis | Bayesian analysis | Index Medicus
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6. Full Text Identification and Stoichiometry of Glycosylphosphatidylinositol-anchored Membrane Proteins of the Human Malaria Parasite Plasmodium falciparum
by Paul R. Gilson and Thomas Nebl and Damjan Vukcevic and Robert L. Moritz and Tobias Sargeant and Terence P. Speed and Louis Schofield and Brendan S. Crabb
Molecular & cellular proteomics, ISSN 1535-9476, 07/2006, Volume 5, Issue 7, pp. 1286 - 1299
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Protein Structure, Tertiary | Blood-Borne Pathogens | Markov Chains | Membrane Proteins - isolation & purification | Reproducibility of Results | Protein Structure, Secondary | Humans | Gene Expression Profiling | Proteome - analysis | Life Cycle Stages | Animals | Glycosylphosphatidylinositols - metabolism | Membrane Proteins - chemistry | Databases, Protein | Protein Array Analysis | Plasmodium falciparum - metabolism | Membrane Proteins - metabolism | Antigens, Surface - analysis | Cluster Analysis | Plasmodium falciparum - chemistry | Index Medicus
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7. Full Text Bayesian modelling of lung function data from multiple‐breath washout tests
by Mahar, Robert K and Carlin, John B and Ranganathan, Sarath and Ponsonby, Anne‐Louise and Vuillermin, Peter and Vukcevic, Damjan
Statistics in medicine, ISSN 0277-6715, 05/2018, Volume 37, Issue 12, pp. 2016 - 2033
variance components | Stan | multiple‐breath washout | incomplete data | lung clearance index | multiple-breath washout | Statistics & Probability | Physical Sciences | Life Sciences & Biomedicine | Medical Informatics | Public, Environmental & Occupational Health | Mathematics | Medicine, Research & Experimental | Science & Technology | Mathematical & Computational Biology | Research & Experimental Medicine | Medicine, Experimental | Medical research | Usage | Models | Analysis | Babies | Medical tests | Lungs | Health risk assessment | Respiration | Bayesian analysis | Index Medicus | Statistics - Applications
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8. Full Text Lack of transparency in software used to analyze multiple breath washout data
by Mahar, Robert K and Vukcevic, Damjan and King, Louise and Carlin, John B and Ranganathan, Sarath
Pediatric pulmonology, ISSN 8755-6863, 11/2016, Volume 51, Issue 11, pp. 1108 - 1110
Respiratory System | Pediatrics | Life Sciences & Biomedicine | Science & Technology
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9. Full Text Common variants in the HLA-DRB1-HLA-DQA1 HLA class II region are associated with susceptibility to visceral leishmaniasis
by Fakiola, Michaela and Strange, Amy and Cordell, Heather J and Miller, E Nancy and Pirinen, Matti and Su, Zhan and Mishra, Anshuman and Mehrotra, Sanjana and Monteiro, Gloria R and Band, Gavin and Bellenguez, Céline and Dronov, Serge and Edkins, Sarah and Freeman, Colin and Giannoulatou, Eleni and Gray, Emma and Hunt, Sarah E and Lacerda, Henio G and Langford, Cordelia and Pearson, Richard and Pontes, Núbia N and Rai, Madhukar and Singh, Shri P and Smith, Linda and Sousa, Olivia and Vukcevic, Damjan and Bramon, Elvira and Brown, Matthew A and Casas, Juan P and Corvin, Aiden and Duncanson, Audrey and Jankowski, Janusz and Markus, Hugh S and Mathew, Christopher G and Palmer, Colin N. A and Plomin, Robert and Rautanen, Anna and Sawcer, Stephen J and Trembath, Richard C and Viswanathan, Ananth C and Wood, Nicholas W and Wilson, Mary E and Deloukas, Panos and Peltonen, Leena and Christiansen, Frank and Witt, Campbell and Jeronimo, Selma M. B and Sundar, Shyam and Spencer, Chris C. A and Blackwell, Jenefer M and Donnelly, Peter and Wellcome Trust Case Control and LeishGEN Consortium and Wellcome Trust Case Control Consortium 2
Nature genetics, ISSN 1061-4036, 02/2013, Volume 45, Issue 2, pp. 208 - 213
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Genetic Predisposition to Disease - genetics | Genome-Wide Association Study | HLA-DRB1 Chains - genetics | Oligonucleotide Array Sequence Analysis | Gene Frequency | Humans | Genotype | Linear Models | HLA-DQ alpha-Chains - genetics | India | Haplotypes - genetics | Electrophoresis, Agar Gel | Leishmaniasis, Visceral - genetics | Brazil | Polymorphism, Single Nucleotide - genetics | Odds Ratio | Quantitative trait loci | Kala-azar | Disease susceptibility | Genetic aspects | Research | Health aspects | Identification and classification | Risk factors | Studies | Disease | Parasitic diseases | Quality control | Genetics | Tropical diseases | Methods | Index Medicus
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10. Full Text Imputation of KIR Types from SNP Variation Data
by Vukcevic, Damjan and Traherne, James A and Næss, Sigrid and Ellinghaus, Eva and Kamatani, Yoichiro and Dilthey, Alexander and Lathrop, Mark and Karlsen, Tom H and Franke, Andre and Moffatt, Miriam and Cookson, William and Trowsdale, John and McVean, Gil and Sawcer, Stephen and Leslie, Stephen
American journal of human genetics, ISSN 0002-9297, 10/2015, Volume 97, Issue 4, pp. 593 - 607
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Dermatitis, Atopic - genetics | Genetic Predisposition to Disease | Receptors, KIR - genetics | Receptors, KIR - classification | Europe | Humans | Genotype | Male | DNA Copy Number Variations - genetics | Sequence Analysis, DNA | Asthma - genetics | Case-Control Studies | Polymorphism, Single Nucleotide - genetics | Family | Female | High-Throughput Nucleotide Sequencing | Cohort Studies | Genetic aspects | Single nucleotide polymorphisms | Observations | Autoimmune diseases | Genetic variation | Antigens | Immunoglobulins | T cell receptors | Genes | Immune system | Index Medicus
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