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1. Full Text Review of Desulfotomaculum species and proposal of the genera Desulfallas gen. Nov., Desulfofundulus gen. nov., Desulfofarcimen gen. nov. and Desulfohalotomaculum gen. nov
by Watanabe, Miho and Kojima, Hisaya and Fukui, Manabu
International Journal of Systematic and Evolutionary Microbiology, ISSN 1466-5026, 09/2018, Volume 68, Issue 9, pp. 2891 - 2899
The genus Desulfotomaculum is a heterogeneous group of spore-forming sulfate-reducing bacteria. The type species of the genus is Desulfotomaculum nigrificans... 
Desulfotomaculum | Sulfate-reducing bacteria | Reclassification | Firmicutes | SULFATE-REDUCING BACTERIUM | SP. NOV | SUBSURFACE | CLASSIFICATION | MICROBIOLOGY | FLUIDIZED-BED REACTOR | GREAT-ARTESIAN-BASIN | SEDIMENT | reclassification | sulfate-reducing bacteria | BENZOATE | WATER
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2. Kaku hasai chūseishi gen kōgaku gairon
by Watanabe, Noboru and Nihon Genshiryoku Kenkyūjo
2001, JAERI-review, Volume 2000-031., xii, 288
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3. Full Text Sulfuricaulis limicola gen. Nov., sp. nov., a sulphur oxidizer isolated from a lake
by Kojima, Hisaya and Watanabe, Tomohiro and Fukui, Manabu
International Journal of Systematic and Evolutionary Microbiology, ISSN 1466-5026, 01/2016, Volume 66, Issue 1, pp. 266 - 270
A novel sulfur-oxidizing bacterium, strain HA5(T), was isolated from sediment of a lake in Japan. The cells were rod-shaped (0.3-0.5 x 1.2-6.0 gm) and... 
MICROBIOLOGY | DIVERSITY | SEDIMENTS | ENVIRONMENT | Sulfur - metabolism | Fatty Acids - chemistry | Oxidation-Reduction | Sulfur-Reducing Bacteria - isolation & purification | Gammaproteobacteria - metabolism | Japan | Molecular Sequence Data | Gammaproteobacteria - classification | Sulfur-Reducing Bacteria - genetics | Phylogeny | Sequence Analysis, DNA | Sulfur-Reducing Bacteria - classification | Geologic Sediments - microbiology | Autotrophic Processes | DNA, Bacterial - genetics | Lakes - microbiology | Base Composition | Bacterial Typing Techniques | RNA, Ribosomal, 16S - genetics | Gammaproteobacteria - genetics
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4. Full Text 'Cand. Actinochlamydia clariae' gen. nov., sp. nov., a Unique Intracellular Bacterium Causing Epitheliocystis in Catfish (Clarias gariepinus) in Uganda
by Steigen, Andreas and Nylund, Are and Karlsbakk, Egil and Akoll, Peter and Fiksdal, Ingrid U and Nylund, Stian and Odong, Robinson and Plarre, Heidrun and Semyalo, Ronald and Skår, Cecilie and Watanabe, Kuninori
PLoS ONE, ISSN 1932-6203, 06/2013, Volume 8, Issue 6, p. e66840
Background and Objectives: Epitheliocystis, caused by bacteria infecting gill epithelial cells in fish, is common among a large range of fish species in both... 
CHLAMYDIA-PSITTACI | OUTER-MEMBRANE PROTEIN | CANDIDATUS-CLAVOCHLAMYDIA-SALMONICOLA | MULTIDISCIPLINARY SCIENCES | SURFACE PROJECTIONS | PROTOCHLAMYDIA-AMOEBOPHILA | ORDER CHLAMYDIALES | PISCICHLAMYDIA SALMONIS | ACANTHAMOEBA-POLYPHAGA | CELL | ATLANTIC SALMON | Epithelium - pathology | Fish Diseases - microbiology | Inclusion Bodies - ultrastructure | Catfishes - microbiology | Gills - microbiology | Molecular Sequence Data | Epithelium - ultrastructure | Phylogeny | Chlamydiales - physiology | Chlamydiales - ultrastructure | Fish Diseases - pathology | Animals | Intracellular Space - microbiology | Epithelium - microbiology | Inclusion Bodies - pathology | Uganda | Gills - pathology | Real-Time Polymerase Chain Reaction | Bacterial Infections - microbiology | Bacteria | RNA | Health aspects | Aquaculture industry | Sea-water | Cell culture | Respiratory function | Chemical analysis | rRNA 16S | Similarity | Epithelial cells | Zoology | Radiation | Biology | Cell surface | Channels | Gene sequencing | Proteins | Sexually transmitted diseases | Developmental stages | Catfish | Chlamydia | Water analysis | Animal tissues | Fish | Swimming | Deoxyribonucleic acid--DNA | Seawater | Bacterial infections | Salmon | Tubules | Electron microscopy | Transmission electron microscopy | Cysts | Microscopy | Morphology | New species | Aquaculture | Deoxyribonucleic acid | DNA
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5. Full Text Methylomusa anaerophila gen. Nov., sp. nov., an anaerobic methanol-utilizing bacterium isolated from a microbial fuel cell
by Amano, Nanako and Yamamuro, Ayaka and Miyahara, Morio and Kouzuma, Atsushi and Abe, Takashi and Watanabe, Kazuya
International Journal of Systematic and Evolutionary Microbiology, ISSN 1466-5026, 04/2018, Volume 68, Issue 4, pp. 1118 - 1122
Abacterial strain, designated MMFC1(T), was isolated from a methanol-fed microbial fuel cell that had been inoculated with sludge obtained from a... 
Methylomusa gen. nov | Sporomusaceae | New taxa | Anaerophila sp. Nov | SPOROMUSA | MICROBIOLOGY | Anaerophila sp nov | new taxa | Fatty Acids - chemistry | Firmicutes - isolation & purification | Bioelectric Energy Sources | Japan | Firmicutes - genetics | Firmicutes - classification | Phylogeny | Sequence Analysis, DNA | DNA, Bacterial - genetics | Base Composition | Bioreactors | Bacterial Typing Techniques | RNA, Ribosomal, 16S - genetics | Sewage - microbiology | Methanol
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6. Full Text Description of Christensenella minuta gen. nov., sp. nov., isolated from human faeces, which forms a distinct branch in the order Clostridiales, and proposal of Christensenellaceae fam. nov
by Morotomi, Masami and Nagai, Fumiko and Watanabe, Yohei
International Journal of Systematic and Evolutionary Microbiology, ISSN 1466-5026, 01/2011, Volume 62, Issue 1, pp. 144 - 149
A novel, strictly anaerobic, non-motile, non-spore-forming, Gram-negative, short, straight rod with tapered ends, designated YIT 12065(T), was isolated from... 
CORE | ANAEROBE | MEMBERS | MICROBIOLOGY | FATTY-ACIDS | DIVERSITY | LAKE | GUT MICROBES | Anaerobiosis | Butyrates - metabolism | Gram-Positive Bacteria - physiology | Humans | Molecular Sequence Data | DNA, Bacterial - chemistry | Phylogeny | DNA, Ribosomal - chemistry | Gram-Positive Bacteria - genetics | Feces - microbiology | Bacterial Typing Techniques | Sucrose - metabolism | Acetic Acid - metabolism | Fatty Acids - metabolism | DNA, Ribosomal - genetics | Oxidoreductases - metabolism | Fermentation | Sequence Analysis, DNA | Catalase - metabolism | DNA, Bacterial - genetics | Base Composition | Gram-Positive Bacteria - classification | Glucose - metabolism | Gram-Positive Bacteria - isolation & purification | RNA, Ribosomal, 16S - genetics | Urease - metabolism | Carbohydrates - analysis | Cluster Analysis
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7. Full Text Ferrigenium kumadai gen. nov., sp. nov., a microaerophilic iron-oxidizing bacterium isolated from a paddy field soil
by Khalifa, Ashraf and Khalifa, Ashraf and Nakasuji, Yuta and Nakasuji, Yuta and Saka, Norikuni and Saka, Norikuni and Honjo, Hiroki and Honjo, Hiroki and Asakawa, Susumu and Asakawa, Susumu and Watanabe, Takeshi and Watanabe, Takeshi
International journal of systematic and evolutionary microbiology, ISSN 1466-5026, 08/2018, Volume 68, Issue 8, pp. 2587 - 2592
An iron-oxidizing bacterium, designated strain An22(T), which was isolated from a paddy field soil in Anjo, Japan, was described taxonomically. Strain An22(T)... 
iron-oxidizing bacteria | paddy field soil | microaerophile | autotroph | GROUNDWATER SEEP | PROTEOBACTERIA | GALLIONELLA-FERRUGINEA | FRESH-WATER LAKE | MICROBIOLOGY | DNA-BASE COMPOSITION | PERFORMANCE LIQUID-CHROMATOGRAPHY | RECLASSIFICATION | GROWTH | RHIZOSPHERE | CIRCUMNEUTRAL PH | Gallionellaceae - genetics | Fatty Acids - chemistry | Gallionellaceae - classification | Soil Microbiology | Japan | Phylogeny | Iron - metabolism | Sequence Analysis, DNA | Autotrophic Processes | DNA, Bacterial - genetics | Oryza | Base Composition | Gallionellaceae - isolation & purification | Bacterial Typing Techniques | RNA, Ribosomal, 16S - genetics | Ubiquinone - chemistry
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8. Full Text Sulfuritortus calidifontis gen. nov., sp. nov., a sulfur oxidizer isolated from a hot spring microbial mat
by Kojima, Hisaya and Watanabe, Miho and Fukui, Manabu
International Journal of Systematic and Evolutionary Microbiology, ISSN 1466-5026, 05/2017, Volume 67, Issue 5, pp. 1355 - 1358
A novel sulfur-oxidizing autotrophic bacterium, strain J1A(T) was isolated from a hot spring microbial mat. The cells were Gram-stain-negative,... 
Hot spring | Thiobacillus | Sulfur-oxidizing bacteria | MICROBIOLOGY | LAKE | hot spring | sulfur-oxidizing bacteria | Betaproteobacteria - isolation & purification | Fatty Acids - chemistry | Betaproteobacteria - classification | Hot Springs - microbiology | Oxidation-Reduction | Sulfur-Reducing Bacteria - isolation & purification | Japan | Sulfur-Reducing Bacteria - genetics | Phylogeny | Sequence Analysis, DNA | Betaproteobacteria - genetics | Sulfur-Reducing Bacteria - classification | Vitamin K 2 - analogs & derivatives | Autotrophic Processes | Vitamin K 2 - chemistry | DNA, Bacterial - genetics | Base Composition | Bacterial Typing Techniques | RNA, Ribosomal, 16S - genetics | Sulfur | Chemoautotrophic Growth
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9. Full Text Limnochorda pilosa gen. Nov, sp. Nov, a moderately thermophilic, facultatively anaerobic, pleomorphic bacterium and proposal of Limnochordaceae fam. Nov, Limnochordales ord. Nov. And Limnochordia classis nov. In the phylum Firmicutes
by Watanabe, Miho and Kojima, Hisaya and Fukui, Manabu
International Journal of Systematic and Evolutionary Microbiology, ISSN 1466-5026, 08/2015, Volume 65, Issue 8, pp. 2378 - 2384
A novel facultatively anaerobic bacterium, strain HC45(T), was isolated from sediment of a brackish meromictic lake in Japan, Lake Harutori. Cells were... 
DEPENDS | MICROBIOLOGY | MEROMICTIC LAKE | SULFATE-REDUCING BACTERIUM | EMENDED DESCRIPTION | SYMBIOBACTERIUM-THERMOPHILUM | Temperature | Fatty Acids - chemistry | Firmicutes - isolation & purification | Japan | Molecular Sequence Data | Firmicutes - genetics | Firmicutes - classification | Phylogeny | Sequence Analysis, DNA | Geologic Sediments - microbiology | Vitamin K 2 - analogs & derivatives | Vitamin K 2 - chemistry | DNA, Bacterial - genetics | Lakes - microbiology | Base Composition | Bacterial Typing Techniques | RNA, Ribosomal, 16S - genetics
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10. Full Text Sulfurirhabdus autotrophica gen. nov., sp. nov., isolated from a freshwater lake
by Watanabe, Tomohiro and Kojima, Hisaya and Shinohara, Arisa and Fukui, Manabu
International Journal of Systematic and Evolutionary Microbiology, ISSN 1466-5026, 01/2016, Volume 66, Issue 1, pp. 113 - 117
A novel sulfur-oxidizing bacterium, designated strain BiS0(T), was isolated from a sediment sample collected from a freshwater lake in Japan. The cells were... 
OXIDATION | THIOBACILLUS-PLUMBOPHILUS | FUNCTIONAL MARKER GENE | SEDIMENTS | BACTERIAL COMMUNITIES | MICROBIOLOGY | SULFURICELLA-DENITRIFICANS SKB26 | DISTRIBUTION-SYSTEM | DIVERSITY | PROKARYOTES | INSIGHTS | Betaproteobacteria - isolation & purification | Fatty Acids - chemistry | Betaproteobacteria - classification | Japan | Molecular Sequence Data | Phylogeny | Sequence Analysis, DNA | Betaproteobacteria - genetics | Geologic Sediments - microbiology | DNA, Bacterial - genetics | Lakes - microbiology | Base Composition | Bacterial Typing Techniques | RNA, Ribosomal, 16S - genetics
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11. Full Text Paranucleospora theridion n. gen., n. sp. (Microsporidia, Enterocytozoonidae) with a Life Cycle in the Salmon Louse (Lepeophtheirus salmonis, Copepoda) and Atlantic Salmon (Salmo salar)
by NYLUND, STIAN and NYLUND, ARE and WATANABE, KUNINORI and ARNESEN, CARL E and KARLSBAKK, EGIL
Journal of Eukaryotic Microbiology, ISSN 1066-5234, 03/2010, Volume 57, Issue 2, pp. 95 - 114
Paranucleospora theridion n. gen, n. sp., infecting both Atlantic salmon (Salmo salar) and its copepod parasite Lepeophtheirus salmonis is described. The... 
merogony | parasite | Enterocytozoon bieneusi | Nucleospora salmonis | sporogony | phylogeny | Electron microscopy | Parasite | Phylogeny | Merogony | Sporogony | ANEMIA-VIRUS ISAV | ONCORHYNCHUS-TSHAWYTSCHA | MICROBIOLOGY | TIME RT-PCR | AIDS PATIENTS | SKELETAL-MUSCLE INFLAMMATION | CULTURED-CELL | DISEASE | FISH | INTRANUCLEAR MICROSPORIDIUM | RNA, Protozoan - genetics | Cytoplasm - parasitology | RNA, Ribosomal, 18S - genetics | Apansporoblastina - classification | Apansporoblastina - growth & development | Molecular Sequence Data | DNA, Ribosomal - chemistry | Salmo salar - parasitology | Sequence Analysis, DNA | Cell Nucleus - parasitology | Life Cycle Stages | Epithelial Cells - parasitology | Epidermis - parasitology | Animals | Apansporoblastina - isolation & purification | Phagocytes - parasitology | Copepoda - parasitology | Apansporoblastina - genetics | DNA, Protozoan - genetics | Genes, rRNA | DNA, Protozoan - chemistry | Spores, Protozoan - cytology | DNA, Ribosomal - genetics | Salmon | Analysis | Disease transmission
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12. Full Text Sulfurivermis fontis gen. Nov., sp. nov., a sulfur-oxidizing autotroph, and proposal of Thioprofundaceae fam. nov
by Kojima, Hisaya and Watanabe, Miho and Fukui, Manabu
International Journal of Systematic and Evolutionary Microbiology, ISSN 1466-5026, 09/2017, Volume 67, Issue 9, pp. 3458 - 3461
A novel Gram-stain-negative, chemolithoautotrophic sulfur oxidizer, strain JG42(T), was isolated from a hot spring microbial mat. As an electron donor for... 
Sulfur-oxidizing bacteria | Order Chromatiales | Chemolithoautotroph | BACTERIUM | MICROBIOLOGY | chemolithoautotroph | LAKE | sulfur-oxidizing bacteria | order Chromatiales | Sulfur - metabolism | Fatty Acids - chemistry | Hot Springs - microbiology | Sulfur-Reducing Bacteria - isolation & purification | Japan | Gammaproteobacteria - classification | Sulfur-Reducing Bacteria - genetics | Phylogeny | Sequence Analysis, DNA | Gammaproteobacteria - isolation & purification | Sulfur-Reducing Bacteria - classification | Autotrophic Processes | DNA, Bacterial - genetics | Base Composition | Bacterial Typing Techniques | RNA, Ribosomal, 16S - genetics | Gammaproteobacteria - genetics
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13. Full Text Desulfocucumis palustris gen. nov., sp. nov., a mesophilic sulfate reducer belonging to desulfotomaculum subcluster ig
by Watanabe, Miho and Kojima, Hisaya and Fukui, Manabu
International Journal of Systematic and Evolutionary Microbiology, ISSN 1466-5026, 2017, Volume 67, Issue 8, pp. 2679 - 2682
A mesophilic, endospore-forming, sulfate-reducing bacterium, designated strain NAW-5(T), was isolated from marsh soil. Cells of strain NAW-5(T) were... 
Desulfotomaculum | Sulfate-reducing bacterium | Firmicutes | MICROBIOLOGY | BACTERIA | sulfate | reducing bacterium | firmicutes | Sulfur - metabolism | Fatty Acids - chemistry | Sulfates - metabolism | Oxidation-Reduction | Soil Microbiology | Japan | Phylogeny | Sequence Analysis, DNA | Thiosulfates - metabolism | Wetlands | Vitamin K 2 - analogs & derivatives | Vitamin K 2 - chemistry | DNA, Bacterial - genetics | Base Composition | Bacterial Typing Techniques | Desulfotomaculum - classification | RNA, Ribosomal, 16S - genetics
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14. Full Text Sulfuriferula multivorans gen. nov., sp nov., isolated from a freshwater lake, reclassification of 'Thiobacillus plumbophilus' as Sulfuriferula plumbophilus sp nov., and description of Sulfuricellaceae fam. nov and Sulfuricellales ord. nov
by Watanabe, T and Kojima, H and Fukui, M
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, ISSN 1466-5026, 05/2015, Volume 65, Issue Pt 5, pp. 1504 - 1508
A sulfur-oxidizing bacterium, strain TINT, was isolated from a Thioploca sample obtained from a freshwater lake in Japan. The isolate shared 97.1% 16S rRNA... 
NAMES | MICROBIOLOGY | NOMENCLATURE | DIVERSITY | LIST | Genes, Bacterial | Fresh Water - microbiology | Thiobacillus - isolation & purification | Japan | Molecular Sequence Data | Phylogeny | Sequence Analysis, DNA | Geologic Sediments - microbiology | DNA, Bacterial - genetics | Lakes - microbiology | Base Composition | Bacterial Typing Techniques | RNA, Ribosomal, 16S - genetics | Thiobacillus - classification | Thiobacillus - genetics
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15. Full Text Gymnomonas nepalensis gen. et sp. nov. for the naked flagellate strain ‘Nepal’, formerly identified as Dunaliella lateralis (Volvocales, Chlorophyceae)
: Gymnomonas nepalensis gen. et sp. nov
by Watanabe, Shin and Nakada, Takashi
Phycological Research, ISSN 1322-0829, 07/2018, Volume 66, Issue 3, pp. 167 - 172
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16. Full Text Caenibacillus caldisaponilyticus gen. Nov., sp. nov., a thermophilic, spore-forming and phospholipid-degrading bacterium isolated from acidulocompost
by Tsujimoto, Yoshiyuki and Saito, Ryo and Furuya, Hiroto and Ishihara, Daisuke and Sahara, Takehiko and Kimura, Nobutada and Nishino, Tokuzo and Tsuruoka, Naoki and Shigeri, Yasushi and Watanabe, Kunihiko
International Journal of Systematic and Evolutionary Microbiology, ISSN 1466-5026, 07/2016, Volume 66, Issue 7, pp. 2684 - 2690
A thermophilic and phospholipid-degrading bacterium, designated strain B1571(T), was isolated from acidulocompost, a garbage compost processed under acidic... 
GARBAGE-TREATMENT PROCESS | PULLULANIBACILLUS | SOIL | MICROBIOLOGY | SEQUENCES | DNA | Bacillales - classification | Fatty Acids - chemistry | Soil Microbiology | Bacillales - chemistry | Phylogeny | Sequence Analysis, DNA | Diaminopimelic Acid - chemistry | Vitamin K 2 - analogs & derivatives | DNA, Bacterial - genetics | Base Composition | Spores, Bacterial - physiology | Bacterial Typing Techniques | RNA, Ribosomal, 16S - genetics | Bacillales - isolation & purification | Bacillales - physiology | Vitamin K 2 - analysis | DNA, Ribosomal - genetics
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17. Full Text Falcatimonas natans gen. nov., sp. nov., a strictly anaerobic, amino-acid-decomposing bacterium isolated from a methanogenic reactor of cattle waste
by Watanabe, Misa and Kaku, Nobuo and Ueki, Katsuji and Ueki, Atsuko
International Journal of Systematic and Evolutionary Microbiology, ISSN 1466-5026, 11/2016, Volume 66, Issue 11, pp. 4639 - 4644
A strictly anaerobic bacterial strain (WN011(T)) was isolated from a methanogenic reactor treating waste from cattle farms. Cells of the strain were... 
Clostridial cluster XIVa | Falcatimonas natans | Anaerobes | Methanogenic reactor | Amino acid decomposition | RECLASSIFICATION | FARMS | TREATING WASTE | FIELD | MICROBIOLOGY | PROPOSAL | GENERA | CLOSTRIDIUM | COMB. NOV | Clostridiales - classification | Fatty Acids - chemistry | Japan | Peptidoglycan - chemistry | Phylogeny | Fermentation | Sequence Analysis, DNA | Cattle - microbiology | Diaminopimelic Acid - chemistry | Animals | DNA, Bacterial - genetics | Bacteria, Anaerobic - classification | Base Composition | Bacterial Typing Techniques | Bioreactors - microbiology | Clostridiales - genetics | RNA, Ribosomal, 16S - genetics | Clostridiales - isolation & purification | Manure - microbiology
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18. Full Text Hiding in plain sight: Koshicola spirodelophila gen. et sp. nov. (Chaetopeltidales, Chlorophyceae), a novel green alga associated with the aquatic angiosperm Spirodela polyrhiza
by Watanabe, Shin and Fučíková, Karolina and Lewis, Louise A and Lewis, Paul O
American Journal of Botany, ISSN 0002-9122, 05/2016, Volume 103, Issue 5, pp. 865 - 875
PREMISE OF THE STUDY: Discovery and morphological characterization of a novel epiphytic aquatic green alga increases our understanding of Chaetopeltidales, a... 
pyrenoid | gene loss | biodiversity | transmission electron microscopy | epiphyte | chloroplast genome | Gene loss | Pyrenoid | Transmission electron microscopy | Biodiversity | Chloroplast genome | Epiphyte | Magnoliopsida - anatomy & histology | Chlorophyta - physiology | Genome, Chloroplast | Aquatic Organisms - physiology | Phylogeny | Magnoliopsida - physiology | Chlorophyta - genetics | Base Sequence | Bayes Theorem | Chlorophyta - anatomy & histology | Models, Genetic | Chlorophyta - ultrastructure | DNA, Ribosomal - genetics | Usage | Research | Transmission electron microscopes | Chloroplast membranes | Biological diversity
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19. Full Text Fibrophrys columna gen. nov., sp. nov: A member of the family Amphifilidae
by Takahashi, Yuiki and Yoshida, Masaki and Inouye, Isao and Watanabe, Makoto M
European Journal of Protistology, ISSN 0932-4739, 10/2016, Volume 56, pp. 41 - 50
A novel -like organism, , was isolated from Hiuchigaike Pond in Japan. showed a nearly orbicular or broadly elliptical cell shape and has fine filamentous,... 
Fibrophrys columna sp. nov | Fibrophrys gen. nov | Amphifilidae | Diplophrys | Phylogeny | MARINA | COMPLEX | PROTIST | FUNGI | MICROBIOLOGY | LAKE | LINEAGES | COMMUNITY | Fibrophrys columna sp nov | ULTRASTRUCTURE | DIVERSITY | Microscopy, Electron, Transmission | Species Specificity | RNA, Ribosomal, 18S - genetics | Japan | Stramenopiles - cytology | Ponds - parasitology | Stramenopiles - genetics | Stramenopiles - classification | Stramenopiles - ultrastructure | Hernia | Cladistic analysis | High schools
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