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1. MacClade
: analysis of phylogeny and character evolution, version 3
by Maddison, Wayne P and Maddison, David R
1992, ISBN 9780878934904, 404
Cladistic analysis | Phylogeny | Analyse cladistique | Phylogenèse
Book
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2. MacClade
: analysis of phylogeny and character evolution, version 3.0
by Maddison, Wayne P and Maddison, David R
1992, ISBN 9780878934904, xi, 398
Evolution (Biology) | MacClade (Computer program) | Phylogeny
Book
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3. Full Text A phylogenetic classification of jumping spiders (Araneae: Salticidae)
by Wayne P. Maddison
Journal of Arachnology, ISSN 0161-8202, 2015, Volume 43, Issue 3, pp. 231 - 292
Abstract The classification of jumping spiders (Salticidae) is revised to bring it into accord with recent phylogenetic work. Of the 610 recognized extant and... 
Phylogeny | taxonomy | systematics | biogeography | Monophyly | Biological taxonomies | Mating behavior | Spiders | Embolisms | Folktales | Zoology | New species | Palps | Genera | VISUAL-DISCRIMINATION ABILITY | SPECIES-GROUP ARANEAE | PREY-CAPTURE TECHNIQUES | MAEVIA-INCLEMENS ARANEAE | SOUTH-AFRICA ARANEAE | ANTERIOR-LATERAL EYES | ENTOMOLOGY | PHIDIPPUS-JOHNSONI ARANEAE | ALTERNATIVE PREDATORY TACTICS | AGGRESSIVE-MIMICRY SIGNALS | YLLENUS-ARENARIUS ARANEAE | Jumping spiders | Genetic aspects | Observations | Insect populations | Distribution
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4. Full Text Myrmarachnine jumping spiders of the new subtribe levieina from papua new guinea (Araneae, Salticidae, Myrmarachnini)
by Maddison, Wayne P and Szűts, Tamás
ZooKeys, ISSN 1313-2989, 2019, Volume 2019, Issue 842, pp. 85 - 112
A previously unreported radiation of myrmarachnine jumping spiders from New Guinea is described, which, although having few known species, is remarkably... 
New genus | Molecular phylogeny | Ant mimicry | Salticoida | Taxonomy | Astioida | Salticinae | New species | new species | PHYLOGENY | BIOGEOGRAPHY | taxonomy | EVOLUTION | ZOOLOGY | new genus | molecular phylogeny | GENUS MYRMARACHNE | MAFFT | MACLEAY | Spiders | Phylogeny | COI protein | New genera | Physical characteristics
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5. Full Text New chrysilline and aelurilline jumping spiders from Pakistan (Araneae, salticidae)
by Ali, Pir Asmat and Maddison, Wayne P and Zahid, Muhammad and Butt, Abida
ZooKeys, ISSN 1313-2989, 2018, Volume 2018, Issue 783, pp. 1 - 15
Epocilla pakhtunkhwa Ali & Maddison, sp. n. and Stenaelurillus mardanicus Ali & Maddison, sp. n. are described from Khyber Pakhtunkhwa Province, Pakistan.... 
Khyber Pakhtunkhwa | Aelurillina | Pakistan | Chrysillini | New species | Araneae | Stenaelurillus | Epocilla | Salticidae | new species | MENEMERUS | EPOCILLA THORELL | GENUS | SOUTH-INDIA | REDESCRIPTION | STENAELURILLUS SIMON | RECORDS | ZOOLOGY | Identification and classification | Jumping spiders | Natural history | Eye | Retina
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6. Full Text The Unsolved Challenge to Phylogenetic Correlation Tests for Categorical Characters
by Wayne P. Maddison and Richard G. FitzJohn
Systematic Biology, ISSN 1063-5157, 1/2015, Volume 64, Issue 1, pp. 127 - 136
Points of View | INDEPENDENT CONTRASTS | EVOLUTIONARY BIOLOGY | EVOLUTION | DIVERSIFICATION | DISCRETE | MODEL | BINARY CHARACTERS | EXTINCTION | MAMMALS | Animals | Phylogeny | Biodiversity | Models, Biological | Genetic Speciation | Classification
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7. Full Text A revision of the concept of Mago O. Pickard-Cambridge, 1882, and proposal of a new genus (Araneae: Salticidae: Amycini)
by Ruiz, GRS and Maddison, WP and Galiano, ME
ZOOTAXA, ISSN 1175-5326, 08/2019, Volume 4658, Issue 1, pp. 124 - 140
In this paper we redescribe the type species of Mago O. Pickard-Cambridge,M intentus O. Pickard-Cambridge, and describe Mago brimodes Ruiz & Maddison sp. nov.... 
PHYLOGENY | SPIDERS | ZOOLOGY | Neotropical | BIOGEOGRAPHY | jumping spiders | Matinta | taxonomy | REDESCRIPTION | MAFFT | New species | Species | New genera | Taxonomic revision
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8. Full Text Papuaneon, a new genus of jumping spiders from Papua New Guinea (Araneae: Salticidae: Neonini)
by Maddison, Wayne P
Zootaxa, ISSN 1175-5326, 11/2016, Volume 4200, Issue 3, pp. 437 - 443
The genus Neon Simon stands alone as a phylogenetically isolated astioid jumping spider, the only member of the Neonini. The new genus Papuaneon is established... 
Astioida | Salticinae | New species | Molecular phylogeny | new species | PHYLOGENY | ZOOLOGY | BIOGEOGRAPHY | molecular phylogeny | MAFFT | GENERA | MULTIPLE SEQUENCE ALIGNMENT
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9. Full Text Estimating a Binary Character's Effect on Speciation and Extinction
by Wayne P. Maddison and Peter E. Midford and Sarah P. Otto
Systematic Biology, ISSN 1063-5157, 10/2007, Volume 56, Issue 5, pp. 701 - 710
Determining whether speciation and extinction rates depend on the state of a particular character has been of long-standing interest to evolutionary... 
Extinct species | Null hypothesis | Species extinction | Plant roots | Differential equations | Phylogenetics | Evolution | Phylogeny | Parametric models | Speciation | Cladogenesis | Macroevolution | Branching process | Extinction | Birth-death process | Key innovation | Speciose | Statistical inference | EVOLUTIONARY BIOLOGY | DNA-SEQUENCES | STATES | DIVERSIFICATION | PHYLOGENIES | DISCRETE CHARACTERS | MAXIMUM-LIKELIHOOD APPROACH | KEY INNOVATIONS | INFERENCE | TRAITS | CORRELATED EVOLUTION | Likelihood Functions | Extinction, Biological | Models, Biological | Computer Simulation | Genetic Speciation | Mathematical models | Evolutionary biology | Taxonomy
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10. Full Text CONFOUNDING ASYMMETRIES IN EVOLUTIONARY DIVERSIFICATION AND CHARACTER CHANGE
by Wayne P. Maddison
Evolution, ISSN 0014-3820, 2006, Volume 60, Issue 8, pp. 1743 - 1746
Abstract Studies of character evolution often assume that a phylogeny's shape is determined independently of the characters, which then evolve as mere... 
phylogeny | extinction | Diversification | evolutionary dead-end | irreversibility | speciation | Irreversibility | Phylogeny | Extinction | Evolutionary dead-end | Speciation
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11. Full Text Inferring Phylogeny despite Incomplete Lineage Sorting
by Wayne P. Maddison and L. Lacey Knowles
Systematic Biology, ISSN 1063-5157, 2/2006, Volume 55, Issue 1, pp. 21 - 30
It is now well known that incomplete lineage sorting can cause serious difficulties for phylogenetic inference, but little attention has been paid to methods... 
Biological taxonomies | Divergent evolution | Phylogenetics | Population estimates | Genetic loci | Evolution | Inference | Phylogeny | Species | Population genetics | Population | Divergence | Coalescence | Speciation | coalescence | DNA-SEQUENCES | ANCESTRAL POPULATION SIZES | SPECIES TREES | GENEALOGY | DIVERGENCE TIMES | population | speciation | divergence | GENE TREES | EVOLUTIONARY BIOLOGY | PROBABILITY | DROSOPHILA-PSEUDOOBSCURA | VARIANCE | Selection Bias | Genetics, Population | Genetic Speciation | Evolution, Molecular | Polymorphism, Genetic | Organisms | Gene loci | Evolutionary biology
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12. Full Text Confounding Asymmetries in Evolutionary Diversification and Character Change
by Wayne P. Maddison
Evolution, ISSN 0014-3820, 8/2006, Volume 60, Issue 8, pp. 1743 - 1746
Studies of character evolution often assume that a phylogeny's shape is determined independently of the characters, which then evolve as mere passengers along... 
Extinct species | Biological taxonomies | Estimation bias | Species extinction | Plant roots | Brief Communications | Phylogenetics | Evolution | Sampling bias | Phylogeny | Speciation | phylogeny | evolutionary dead‐end | extinction | Diversification | irreversibility | speciation | PHYLOGENIES | BIAS | evolutionary dead-end | MAXIMUM-LIKELIHOOD APPROACH | EVOLUTIONARY BIOLOGY | ANCESTOR STATES | DISCRETE CHARACTERS | GENETICS & HEREDITY | ECOLOGY | diversification | Biological Evolution | Phenotype | Software | Models, Biological | Genetic Speciation | Evaluation | Research | Symmetry (Biology)
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13. Full Text Estimating Trait-Dependent Speciation and Extinction Rates from Incompletely Resolved Phylogenies
by Richard G. FitzJohn and Wayne P. Maddison and Sarah P. Otto
Systematic Biology, ISSN 1063-5157, 12/2009, Volume 58, Issue 6, pp. 595 - 611
Species traits may influence rates of speciation and extinction, affecting both the patterns of diversification among lineages and the distribution of traits... 
Biological taxonomies | Extinct species | Taxa | Species extinction | Plant roots | Phylogenetics | Evolution | Phylogeny | Species | Speciation | Extinction | Birth-death process | Bayesian inference | Sampling | Bisse | CONFLICT | sampling | bisse | birth-death process | SEXUAL SELECTION | RADIATION | speciation | CHAIN MONTE-CARLO | CHARACTERS | EVOLUTIONARY BIOLOGY | extinction | EVOLUTION | DIVERSIFICATION RATES | SPECIES RICHNESS | BUTTERFLIES | phylogenetics | BIRDS | Models, Theoretical | Charadriiformes - anatomy & histology | Computational Biology - methods | Male | Charadriiformes - genetics | Extinction, Biological | Sex Characteristics | Likelihood Functions | Animals | Computer Simulation | Genetic Speciation | Bayes Theorem | Classification - methods | Female
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14. EXCERPTS FROM MACCLADE ANALYSIS OF PHYLOGENY AND CHARACTER
: EVOLUTION VERSION 3.0
by MADDISON, WAYNE P
EXCERPTS FROM MACCLADE ANALYSIS OF PHYLOGENY AND CHARACTER
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15. Full Text Gene Trees in Species Trees
by Wayne P. Maddison
Systematic Biology, ISSN 1063-5157, 9/1997, Volume 46, Issue 3, pp. 523 - 536
Exploration of the relationship between gene trees and their containing species trees leads to consideration of how to reconstruct species trees from gene... 
Biological taxonomies | Extinct species | Genes | Phylogenetics | Evolutionary genetics | Genetic loci | Gene duplication | Phylogeny | Species | Speciation | Lineage sorting | Biogeography | Hybridization | Coevolution | Gene trees | Species trees | Tree reconciliation | Horizontal transfer | Gene genealogy | Parsimony | Species concepts | Evolution | Coalescence | CLADOGRAMS | NATURAL-POPULATIONS | SEQUENCES | K CX BIOLOGY, MISCELLANEOUS | GENEALOGY | hybridization | species trees | gene genealogy | BIOLOGY, MISCELLANEOUS | tree reconciliation | coevolution | gene duplication | gene trees | RECOMBINATION | coalescence | biogeography | horizontal transfer | parsimony | evolution | SEGREGATION | ORGANISMS | lineage sorting | SYSTEMATICS | phylogeny | species concepts
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16. Pelegrina Franganillo and other jumping spiders formerly placed in the genus Metaphidippus (Araneae:Salticidae)
by Maddison, Wayne P
1996, Bulletin of the Museum of Comparative Zoology, Volume 154, no. 4, 215-368
Metaphidippus | Jumping spiders | Pelegrina | Classification
Book
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