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Journal of Statistical Software, ISSN 1548-7660, 2008, Volume 28, Issue 8, pp. 1 - 23
The R package coin implements a unified approach to permutation tests providing a huge class of independence tests for nominal, ordered, numeric, and censored... 
R | Conditional monte carlo | Exact distribution | Categorical data analysis | Conditional inference | exact distribution | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | conditional Monte Carlo | STATISTICS | conditional inference | STATISTICS & PROBABILITY | categorical data analysis
Journal Article
BMC Medical Research Methodology, ISSN 1471-2288, 08/2017, Volume 17, Issue 1
Background: Multiple imputation is a recommended method to handle missing data. For significance testing after multiple imputation, Rubin's Rules (RR) are... 
Significance test | Logistic regression | Simulation study | Categorical covariates | Health Informatics | Multiple imputation | Pooling | Epidemiology
Journal Article
Bioinformatics, ISSN 1367-4803, 2019, Volume 35, Issue 14, pp. i510 - i519
Motivation: Cell lines and patient-derived xenografts (PDXs) have been used extensively to understand the molecular underpinnings of cancer. While core... 
Journal Article
The American Statistician, ISSN 0003-1305, 08/2006, Volume 60, Issue 3, pp. 257 - 263
Conditioning on the observed data is an important and flexible design principle for statistical test procedures. Although generally applicable, permutation... 
Software | Permutation tests | Asymptotic distribution | Independence | Construction toys | Null hypothesis | Data analysis | Statistical Practice | Inference | P values | Cigarette smoking | Alzheimers disease | Statistics | Tumors | asymptotic distribution | STATISTICS & PROBABILITY | software | independence | permutation tests | CLINICAL-TRIALS | Permutations | Statistical hypothesis testing | Research
Journal Article
Bioinformatics, ISSN 1367-4803, 05/2017, Volume 33, Issue 10, pp. 1572 - 1574
Our aim is to improve omics based prediction and feature selection using multiple sources of auxiliary information: co-data. Adaptive group regularized ridge... 
Computational Theory and Mathematics | Molecular Biology | Computer Science Applications | Computational Mathematics | Medicine(all) | Statistics and Probability | Biochemistry
Journal Article
Bioinformatics, ISSN 1367-4803, 2019, Volume 35, Issue 14, pp. i510 - i519
Motivation: Cell lines and patient-derived xenografts (PDXs) have been used extensively to understand the molecular underpinnings of cancer. While core... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | XENOGRAFTS | Eccb 2019 Conference Proceedings | Ismb
Journal Article
Journal Article
B M C Bioinformatics, ISSN 1471-2105, 12/2017, Volume 18, Issue 1, pp. 584 - 11
Journal Article
Scandinavian Journal of Statistics, ISSN 0303-6898, 2019, Volume 46, Issue 1, pp. 2 - 25
Empirical Bayes is a versatile approach to “learn from a lot” in two ways: first, from a large number of variables and, second, from a potentially large amount... 
Journal Article
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 12/2017, Volume 18, Issue 1
Background: Prediction in high dimensional settings is difficult due to the large number of variables relative to the sample size. We demonstrate how auxiliary... 
Prior information | Molecular Biology | Computer Science Applications | DNA copy number | Structural Biology | Classification | Random forest | Biochemistry | Gene expression | Methylation | Applied Mathematics
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 12/2017, Volume 18, Issue 1
Background: Prediction in high dimensional settings is difficult due to the large number of variables relative to the sample size. We demonstrate how auxiliary... 
Prior information | Molecular Biology | Computer Science Applications | DNA copy number | Structural Biology | Classification | Random forest | Biochemistry | Gene expression | Methylation | Applied Mathematics
Journal Article
Journal of the Royal Statistical Society. Series C: Applied Statistics, ISSN 0035-9254, 04/2018, Volume 2018, pp. 1 - 18
Genes work together in sets known as pathways to contribute to cellular processes, such as apoptosis and cell proliferation. Pathway activation, or... 
Conditional independence | Partial correlations | Network | Multivariate normality | Statistics and Probability | Penalized estimation | Statistics, Probability and Uncertainty
Journal Article
Communications in Statistics: Simulation and Computation, ISSN 0361-0918, 2019, pp. 1 - 19
For high-dimensional linear regression models, we review and compare several estimators of variances τ2 and σ2 of the random slopes and errors, respectively.... 
Journal Article
Journal Article
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