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Nature Methods, ISSN 1548-7091, 06/2015, Volume 12, Issue 7, pp. 605 - 608
Analysis pipelines that assign peptides to shotgun proteomics mass spectra often discard identified spectra deemed irrelevant to the scientific hypothesis... 
PROTEIN | IDENTIFICATIONS | BIOCHEMICAL RESEARCH METHODS | STATISTICAL-MODEL | PROBABILITIES | Plasmodium - chemistry | Proteomics - methods | Humans | Mass Spectrometry | Peptides - analysis | Scientific imaging | Peptides | Analysis | Proteomics | Index Medicus
Journal Article
Journal of Proteome Research, ISSN 1535-3893, 11/2018, Volume 17, Issue 11, pp. 3644 - 3656
To achieve accurate assignment of peptide sequences to observed fragmentation spectra, a shotgun proteomics database search tool must make good use of the very... 
high-resolution MS2 | database search | statistical calibration | PEPTIDE IDENTIFICATION | STRATEGY | BIOCHEMICAL RESEARCH METHODS | SEARCH TOOL | MS/MS | ACCURACY | TANDEM MASS-SPECTRA | CONFIDENCE | SPECTROMETRY | PROTEOMICS
Journal Article
PLoS Computational Biology, ISSN 1553-734X, 10/2017, Volume 13, Issue 10, pp. e1005730 - e1005730
About the Authors: William Stafford Noble * E-mail: william-noble@uw.edu Affiliation: Departments of Genome Sciences and Computer Science and Engineering,... 
BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Writing | Guidelines as Topic | Peer Review, Research | Scholarly publishing | Methods | Peer review | Editors | Manuscripts | Index Medicus
Journal Article
Bioinformatics, ISSN 1367-4803, 06/2005, Volume 21, Issue 1, pp. i38 - i46
Journal Article
PLoS Computational Biology, ISSN 1553-734X, 07/2009, Volume 5, Issue 7
  At the root of most of my projects, I have a data directory for storing fixed data sets, a results directory for tracking computational experiments peformed... 
Studies | Scripts | Principles | Biology | Software upgrading | Bioinformatics | Experiments | Software engineering
Journal Article
Bioinformatics, ISSN 1367-4803, 02/2003, Volume 19, Issue 2, pp. 295 - 296
Journal Article
Bioinformatics (Oxford, England), ISSN 1367-4803, 08/2019, Volume 35, Issue 15, pp. 2695 - 2696
Journal Article
PLoS Computational Biology, ISSN 1553-734X, 01/2011, Volume 7, Issue 1
  Virtually every molecular biologist has searched a protein or DNA sequence database to find sequences that are evolutionarily related to a given query.... 
Proteins | Studies | Problems | Algorithms | Neighborhoods | Semantics | Bioinformatics | Data bases | Methods
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