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by Collisson, Eric A and Campbell, Joshua D and Brooks, Angela N and Berger, Alice H and Lee, William and Chmielecki, Juliann and Beer, David G and Cope, Leslie and Creighton, Chad J and Danilova, Ludmila and Ding, Li and Getz, Gad and Hammerman, Peter S and Hayes, D. Neil and Hernandez, Bryan and Herman, James G and Heymach, John V and Jurisica, Igor and Kucherlapati, Raju and Kwiatkowski, David and Ladanyi, Marc and Robertson, Gordon and Schultz, Nikolaus and Shen, Ronglai and Sinha, Rileen and Sougnez, Carrie and Tsao, Ming-Sound and Travis, William D and Weinstein, John N and Wigle, Dennis A and Wilkerson, Matthew D and Chu, Andy and Cherniack, Andrew D and Hadjipanayis, Angela and Rosenberg, Mara and Weisenberger, Daniel J and Laird, Peter W and Radenbaugh, Amie and Ma, Singer and Stuart, Joshua M and Byers, Lauren Averett and Baylin, Stephen B and Govindan, Ramaswamy and Meyerson, Matthew and Gabriel, Stacey B and Cibulskis, Kristian and Kim, Jaegil and Stewart, Chip and Lichtenstein, Lee and Lander, Eric S and Lawrence, Michael S and Getz, E and Fulton, Robert and Fulton, Lucinda L and McLellan, Michael D and Wilson, Richard K and Ye, Kai and Fronick, Catrina C and Maher, Christopher A and Miller, Christopher A and Wendl, Michael C and Cabanski, Christopher and Mardis, Elaine and Wheeler, David and Balasundaram, Miruna and Butterfield, Yaron S. N and Carlsen, Rebecca and Chuah, Eric and Dhalla, Noreen and Guin, Ranabir and Hirst, Carrie and Lee, Darlene and Li, Haiyan I and Mayo, Michael and Moore, Richard A and Mungall, Andrew J and Schein, Jacqueline E and Sipahimalani, Payal and Tam, Angela and Varhol, Richard and Robertson, A. Gordon and Wye, Natasja and Thiessen, Nina and Holt, Robert A and Jones, Steven J.M and Marra, Marco A and Imielinski, Marcin and Onofrio, Robert C and Hodis, Eran and Zack, Travis and Helman, Elena and Pedamallu, Chandra Sekhar and Mesirov, Jill and Saksena, Gordon and Schumacher, Steven E and Carter, Scott L and Garraway, Levi and Beroukhim, Rameen and Lee, Semin and Mahadeshwar, Harshad S and ...
Nature, ISSN 0028-0836, 2014, Volume 511, Issue 7511, pp. 543 - 550
Journal Article
Cell, ISSN 0092-8674, 09/2013, Volume 155, Issue 1, p. 27
Genomics is a relatively new scientific discipline, having DNA sequencing as its core technology. As technology has improved the cost and scale of genome... 
Journal Article
by Wang, Zhining and Wang, Linghua and Wang, Min and Wang, Jing and Wang, Jioajiao and Wang, Yumeng and Wang, Timothy and Xu, Xiaoyan and Maglic, Dejan and Dill, Michael T and Mojumdar, Kamalika and Ng, Patrick Kwok-Shing and Ng, Kwok-Shing and Jeong, Kang Jin and Tsang, Yiu Huen and Moreno, Daniela and Bhavana, Venkata Hemanjani and Peng, Xinxin and Ge, Zhongqi and Chen, Zhongyuan and Chen, Amy and Chen, Chu and Chen, Hu and Li, Jun and Li, Wei and Zhang, Jiexin and Zhang, Jiashan (Julia) and Zhang, Lizhi and Zhang, Huiwen and Zhang, Hongzheng and Zhang, Wei and Zhang, Hongxin and Zhang, Hailei and Han, Yi and Han, Leng and Du, Di and Creighton, Chad J and Mills, Gordon B and Caesar-Johnson, Samantha J and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Ferguson, Martin L and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Yang, Liming and Yang, Ju Dong and Yang, Ian and Yang, Hannah and Zenklusen, Jean C and Chudamani, Sudha and Liu, Wenbin and Liu, Jia and Liu, Yuexin and Liu, Xiuping and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Sun, Qiang and Sun, Yichao and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and Gehlenborg, Nils and Getz, Gad and Heiman, David I and Kim, Jaegil and Lawrence, Michael S and Lin, Pei and Meier, Sam and Noble, Michael S and Saksena, Gordon and Voet, Doug and Bernard, Brady and Chambwe, Nyasha and Dhankani, Varsha and Knijnenburg, Theo and Kramer, Roger and Leinonen, Kalle and Miller, Michael and Miller, Judy and Miller, Christopher A and Reynolds, Sheila and Shmulevich, Ilya and Thorsson, Vesteinn and Akbani, Rehan and Broom, Bradley M and Hegde, Apurva M and Ju, Zhenlin and Kanchi, Rupa S and Korkut, Anil and Liang, Han and Ling, Shiyun and Lu, Yiling and Rao, Arvind and Ryan, Michael and Weinstein, John N and ... and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network
Cell Reports, ISSN 2211-1247, 10/2018, Volume 25, Issue 5, pp. 1304 - 1317.e5
Hippo signaling has been recognized as a key tumor suppressor pathway. Here, we perform a comprehensive molecular characterization of 19 Hippo core genes in... 
miRNA regulation | YAP | tumor subtype | TAZ | TCGA | prognostic power | pan-cancer analysis | driver mutation | pathway activity | BREAST-CANCER | CELLS | TUMOR PROGRESSION | GENE | ORGAN SIZE CONTROL | PANCREATIC-CANCER | GROWTH | PROMOTES | CELL BIOLOGY
Journal Article
by Adema, Coen M and Hillier, LaDeana W and Jones, Catherine S and Loker, Eric S and Knight, Matty and Minx, Patrick and Oliveira, Guilherme and Raghavan, Nithya and Shedlock, Andrew and do Amaral, Laurence Rodrigues and Arican-Goktas, Halime D and Assis, Juliana G and Baba, Elio Hideo and Baron, Olga L and Bayne, Christopher J and Bickham-Wright, Utibe and Biggar, Kyle K and Blouin, Michael and Bonning, Bryony C and Botka, Chris and Bridger, Joanna M and Buckley, Katherine M and Buddenborg, Sarah K and Lima Caldeira, Roberta and Carleton, Julia and Carvalho, Omar S and Castillo, Maria G and Chalmers, Iain W and Christensens, Mikkel and Clifton, Sandra and Cosseau, Celine and Coustau, Christine and Cripps, Richard M and Cuesta-Astroz, Yesid and Cummins, Scott F and Di Stefano, Leon and Dinguirard, Nathalie and Duval, David and Emrich, Scott and Feschotte, Cédric and Feyereisen, Rene and FitzGerald, Peter and Fronick, Catrina and Fulton, Lucinda and Galinier, Richard and Gava, Sandra G and Geusz, Michael and Geyer, Kathrin K and Giraldo-Calderón, Gloria I and de Souza Gomes, Matheus and Gordy, Michelle A and Gourbal, Benjamin and Grunau, Christoph and Hanington, Patrick C and Hoffmann, Karl F and Hughes, Daniel and Humphries, Judith and Jackson, Daniel J and Jannotti-Passos, Liana K and de Jesus Jeremias, Wander and Jobling, Susan and Kamel, Bishoy and Kapusta, Aurélie and Kaur, Satwant and Koene, Joris M and Kohn, Andrea B and Lawson, Dan and Lawton, Scott P and Liang, Di and Limpanont, Yanin and Liu, Sijun and Lockyer, Anne E and Lovato, Ty Anna L and Ludolf, Fernanda and Magrini, Vince and McManus, Donald P and Medina, Monica and Misra, Milind and Mitta, Guillaume and Mkoji, Gerald M and Montague, Michael J and Montelongo, Cesar and Moroz, Leonid L and Munoz-Torres, Monica C and Niazi, Umar and Noble, Leslie R and Oliveira, Francislon S and Pais, Fabiano S and Papenfuss, Anthony T and Peace, Rob and Pena, Janeth J and Pila, Emmanuel A and Quelais, Titouan and Raney, Brian J and Rast, Jonathan P and Rollinson, David and Rosse, Izinara C and Rotgans, Bronwyn and Routledge, Edwin J and Ryan, Kathryn M and ...
Nature communications, 08/2017, Volume 8, pp. 16153 - 16153
This corrects the article DOI: 10.1038/ncomms15451. 
Schistosomiasis | Genomes
Journal Article
by Thorsson, Vesteinn and Thorsson, Vésteinn and Gibbs, Richard A and Gibbs, David L and Brown, Scott D and Wolf, Gregory and Wolf, Denise and Bortone, Dante S and Ou Yang, Tai-Hsien and Porta-Pardo, Eduard and Gao, Galen F and Gao, Jianjiong and Plaisier, Christopher L and Eddy, James A and Ziv, Elad and Culhane, Aedin C and Paull, Evan O and Sivakumar, I.K. Ashok and Gentles, Andrew J and Malhotra, Raunaq and Farshidfar, Farshad and Colaprico, Antonio and Parker, Joel S and Mose, Lisle E and Vo, Nam Sy and Liu, Wenbin and Liu, Jianfang and Liu, Jia and Liu, Yuexin and Liu, Xiuping and Rader, Janet and Dhankani, Varsha and Reynolds, Sheila and Reynolds, Sheila M and Bowlby, Reanne and Califano, Andrea and Cherniack, Andrew D and Anastassiou, Dimitris and Bedognetti, Davide and Mokrab, Younes and Newman, Aaron M and Rao, Arvind and Chen, Amy and Chen, Chu and Chen, Ken and Krasnitz, Alexander and Hu, Jianhong and Hu, Hai and Malta, Tathiane M and Noushmehr, Houtan and Pedamallu, Chandra Sekhar and Bullman, Susan and Ojesina, Akinyemi I and Lamb, Andrew and Zhou, Wanding and Shen, Hui and Choueiri, Toni K and Weinstein, John N and Guinney, Justin and Saltz, Joel and Holt, Robert and Holt, Robert A and Rabkin, Charles S and Caesar-Johnson, Samantha J and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Ferguson, Martin L and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Wang, Jioajiao and Wang, Min and Wang, Linghua and Wang, Zhining and Wang, Timothy and Wang, Jing and Yang, Ju Dong and Yang, Hannah and Yang, Liming and Yang, Ian and Zenklusen, Jean C and Zhang, Jiashan (Julia) and Zhang, Jiexin and Zhang, Lizhi and Zhang, Wei and Zhang, Hongzheng and Zhang, Hailei and Zhang, Hongxin and Chudamani, Sudha and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Sun, Yichao and Sun, Qiang and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and ... and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network
Immunity, ISSN 1074-7613, 04/2018, Volume 48, Issue 4, pp. 812 - 830.e14
We performed an extensive immunogenomic analysis of more than 10,000 tumors comprising 33 diverse cancer types by utilizing data compiled by TCGA. Across... 
tumor immunology | immunotherapy | cancer genomics | integrative network analysis | immuno-oncology | tumor microenvironment | immune subtypes | immunomodulatory | GENOMIC ANALYSES | INFORMATION | T-CELL-RECEPTOR | REGULATORY NETWORK | CLASSIFICATION | IMMUNOLOGY | SEQUENCING DATA | SOMATIC MUTATIONS | COMPREHENSIVE ANALYSIS | PREDICTION | REVEALS | Transforming Growth Factor beta - immunology | Prognosis | Humans | Middle Aged | Th1-Th2 Balance - physiology | Male | Neoplasms - classification | Wound Healing - immunology | Young Adult | Transforming Growth Factor beta - genetics | Neoplasms - genetics | Neoplasms - immunology | Interferon-gamma - immunology | Adolescent | Aged, 80 and over | Adult | Female | Aged | Interferon-gamma - genetics | Wound Healing - genetics | Genomics - methods | Child | Macrophages - immunology | Cell proliferation | Cluster analysis | Transcription | Copy number | p53 Protein | Lung cancer | Genomics | Aneuploidy | Lymphocytes T | Genomes | Cell interactions | Macrophages | Immunotherapy | DNA methylation | Deoxyribonucleic acid--DNA | Immune system | Medical research | Wound healing | Immunomodulation | MiRNA | Stockholders | Inflammation | T cell receptors | Communications networks | Gene expression | White blood cells | Inventors | Medical prognosis | γ-Interferon | Mutation | Cancer | Tumors | Index Medicus | Immune Subtypes | Integrative Network Analysis | Cancer Genomics | Immuno-oncology | Tumor immunology
Journal Article