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1. Full Text Effect of Screening and Adjuvant Therapy on Mortality from Breast Cancer
by Berry, Donald A and Cronin, Kathleen A and Plevritis, Sylvia K and Fryback, Dennis G and Clarke, Lauren and Zelen, Marvin and Mandelblatt, Jeanne S and Yakovlev, Andrei Y and Habbema, J. Dik F and Feuer, Eric J and CISNET Collaborators and Cancer Intervention and Surveillance Modeling Network (CISNET) Collaborators
The New England Journal of Medicine, ISSN 0028-4793, 10/2005, Volume 353, Issue 17, pp. 1784 - 1792
Seven statistical models were independently developed to investigate the reasons for the reduction in the rate of death from breast cancer from 1975 to 2000.... 
UNITED-STATES | MAMMOGRAPHY | MEDICINE, GENERAL & INTERNAL | SOCIETY GUIDELINES | RANDOMIZED-TRIALS | TAMOXIFEN | PROGRESS | FOLLOW-UP | United States - epidemiology | SEER Program | Humans | Middle Aged | Antineoplastic Agents - therapeutic use | Models, Statistical | Breast Neoplasms - drug therapy | Incidence | Mass Screening | Tamoxifen - therapeutic use | Survival Analysis | Adult | Breast Neoplasms - mortality | Female | Aged | Breast Neoplasms - diagnostic imaging | Chemotherapy, Adjuvant | Mammography - utilization | Neoplasm Staging | United States | Mortality | Adjuvant treatment | Breast cancer | Diagnosis | Drug therapy | Health aspects | Risk factors | Cancer | Womens health | Breasts | Colleges & universities | Clinical trials | Population | Mammography | Cancer therapies | Age
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2. Statistical methods for microarray data analysis
: methods and protocols
by Yakovlev, Andrei Y and Klebanov, Lev and Gaile, Daniel
2013, Methods in Molecular Biology, ISBN 1603273360, Volume 972.
DNA microarrays | statistics & numerical data | Microarray Analysis | Statistical methods
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3. Statistical methods for microarray data analysis
: methods and protocols
by Yakovlev, Andrei Y and Klebanov, Lev and Gaile, Daniel
2013, Methods in Molecular Biology, ISBN 1603273360, Volume 972.
DNA microarrays | statistics & numerical data | Microarray Analysis | Statistical methods
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4. Full Text Increasing the logging road efficiency by reducing the intensity of rutting: Mathemetical modeling
by Manukovskii, Andrei Y and Grigorev, Igor V and Ivanov, Viktor A and Gasparyan, Garik D and Lapshina, Marina L and Makarova, Julia A and Chetverikova, Irina V and Yakovlev, Konstantin A and Afonichev, Dmitry N and Kunickaya, Ol'ga A
Journal of Mechanical Engineering Research and Developments, ISSN 1024-1752, 2018, Volume 41, Issue 2, pp. 35 - 41
Logging Road | Forestry Machines | Impassable Roads | Harvesting | Harvesting Area Exploitation
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5. Branching Processes as Models of Progenitor Cell Populations and Estimation of the Offspring Distributions
by Andrei Y Yakovlev and Vessela K Stoimenova and Nikolay M Yanev
Journal of the American Statistical Association, ISSN 0162-1459, 12/2008, Volume 103, Issue 484, p. 1357
  We consider two new models of reducible age-dependent branching processes with emigration in conjunction with estimation problems arising in cell biology.... 
Cell culture | Cellular biology | Probability | Cell division | Statistical inference | Estimating techniques
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6. Full Text Utility of correlation measures in analysis of gene expression
by Almudevar, Anthony and Klebanov, Lev B and Qiu, Xing and Salzman, Peter and Yakovlev, Andrei Y
Neurotherapeutics, ISSN 1933-7213, 7/2006, Volume 3, Issue 3, pp. 384 - 395
The role of the correlation structure of gene expression data are two-fold: It is a source of complications and useful information at the same time. Ignoring... 
Neurology | Neurosciences | Biomedicine | correlation | genetic networks | Neurobiology | Neurosurgery | Gene expression | microarrays
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7. Full Text Relative Frequencies in Multitype Branching Processes
by Andrei Y. Yakovlev and Nikolay M. Yanev
The Annals of Applied Probability, ISSN 1050-5164, 2/2009, Volume 19, Issue 1, pp. 1 - 14
This paper considers the relative frequencies of distinct types of individuals in multitype branching processes. We prove that the frequencies are... 
Cell culture techniques | Statistical inferences | Cell growth | Cell cycle | Oligodendroglia | Kinetics | Stochastic models | Progenitor cells | Covariance matrices | Cells | Cell proliferation | Joint asymptotic normality | Relative frequencies | Multitype branching processes | STOCHASTIC-MODEL | relative frequencies | cell proliferation | ANCESTORS | STATISTICS & PROBABILITY | INCREASING RANDOM NUMBER | CELL-POPULATIONS | CLONAL DATA | CULTURE | joint asymptotic normality | 60J85 | 62P10 | 92D25 | 60J80
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8. Full Text Branching Processes as Models of Progenitor Cell Populations and Estimation of the Offspring Distributions
by Yakovlev, Andrei Y and Stoimenova, Vessela K and Yanev, Nikolay M
Journal of the American Statistical Association, ISSN 0162-1459, 12/2008, Volume 103, Issue 484, pp. 1357 - 1366
We consider two new models of reducible age-dependent branching processes with emigration in conjunction with estimation problems arising in cell biology.... 
Cell proliferation | Multitype branching process | Offspring distribution | Statistical estimator | Cell culture techniques | Statistical inferences | Experimental data | Emigration | Oligodendroglia | Stochastic models | Progenitor cells | Estimators | Probabilities | Cells | Applications and Case Studies | STATISTICS & PROBABILITY | PROLIFERATION | CULTURE | OLIGODENDROCYTES | STOCHASTIC-MODEL | Offspring distributions | IN-VITRO | ANCESTORS | TEMPORALLY REGULATED GENERATION | INCREASING RANDOM NUMBER | DIFFERENTIATION | CLONAL DATA | Usage | Branching processes | Analysis
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9. Full Text Limiting Distributions for Multitype Branching Processes
by Yakovlev, Andrei Y and Yanev, Nikolay M
Stochastic Analysis and Applications, ISSN 0736-2994, 10/2010, Volume 28, Issue 6, pp. 1040 - 1060
In this article, the asymptotic behavior of multitype Markov branching processes with discrete or continuous time is investigated in the positive regular and... 
Relative frequencies | Primary 60J80, 60J85 | Limit theorems | Multitype branching processes | Secondary 62P10, 92D25 | MATHEMATICS, APPLIED | ANCESTORS | CONVERGENCE | STATISTICS & PROBABILITY | INCREASING RANDOM NUMBER | CELL-POPULATIONS | CLONAL DATA | Infinity | Asymptotic properties | Markov processes | Biology | Normality | Stochasticity | Counting | Constraining | multivariate asymptotic normality | relative frequencies | limit theorems | multitype branching processes
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10. Full Text A new approach to testing for sufficient follow-up in cure-rate analysis
by Klebanov, Lev B and Yakovlev, Andrei Y
Journal of Statistical Planning and Inference, ISSN 0378-3758, 2007, Volume 137, Issue 11, pp. 3557 - 3569
The problem of sufficient follow-up arises naturally in the context of cure rate estimation. This problem was brought to the fore by Maller and Zhou [1992.... 
Statistical test | Survival analysis | Sufficient follow-up | Cure models | Generalized hazard | cure models | CENSORED SURVIVAL-DATA | survival analysis | statistical test | sufficient follow-up | STATISTICS & PROBABILITY | generalized hazard | PROPORTION
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11. Multivariate exploratory tools for microarray data analysis
by Aniko Szabo and Kenneth Boucher and David Jones and Alexander D. Tsodikov and Lev B. Klebanov and Andrei Y. Yakovlev
Biostatistics, ISSN 1465-4644, 10/2003, Volume 4, Issue 4, p. 555
The ultimate success of microarray technology in basic and applied biological sciences depends critically on the development of statistical methods for gene... 
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12. Full Text The University of Rochester model of breast cancer detection and survival
by Hanin, Leonid G and Miller, Anthony and Zorin, A.V and Yakovlev, Andrei Y
Journal of the National Cancer Institute. Monographs, ISSN 1052-6773, 2006, Issue 36, pp. 66 - 78
This paper presents a biologically motivated model of breast cancer development and detection allowing for arbitrary screening schedules and the effects of... 
Predictive Value of Tests | Reproducibility of Results | Age Factors | Neoplasm Invasiveness | Humans | Mass Screening - statistics & numerical data | Survival Rate | Models, Statistical | Incidence | Breast Neoplasms - therapy | Canada - epidemiology | Sensitivity and Specificity | Breast Neoplasms - mortality | Female | Breast Neoplasms - diagnosis | Mammography - statistics & numerical data | Neoplasm Staging | Cohort Studies
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13. Full Text Chapter 10: The University of Rochester Model of Breast Cancer Detection and Survival
by Hanin, Leonid G and Miller, Anthony and Zorin, A. V and Yakovlev, Andrei Y
JNCI Monographs, ISSN 1052-6773, 10/2006, Volume 2006, Issue 36, pp. 66 - 78
This paper presents a biologically motivated model of breast cancer development and detection allowing for arbitrary screening schedules and the effects of... 
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14. Full Text Multivariate exploratory tools for microarray data analysis
by Szabo, Aniko and Boucher, Kenneth and Jones, David and Tsodikov, Alexander D and Klebanov, Lev B and Yakovlev, Andrei Y
Biostatistics (Oxford, England), ISSN 1465-4644, 2003, Volume 4, Issue 4, pp. 555 - 567
The ultimate success of microarray technology in basic and applied biological sciences depends critically on the development of statistical methods for gene... 
MATHEMATICS, INTERDISCIPLINARY APPLICATIONS | sets of genes | permutation test | differential expression | CLASSIFICATION | STATISTICS & PROBABILITY | cross-validation | probability distance | EXPRESSION | CANCER | random search | Multivariate Analysis | Confidence Intervals | Data Interpretation, Statistical | Algorithms | Gene Expression Profiling - statistics & numerical data | Computer Simulation | Humans | Statistics, Nonparametric | Probability | Oligonucleotide Array Sequence Analysis - statistics & numerical data | Leukemia - genetics | Discriminant Analysis
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15. Full Text Chlorine-poor analogues of djerfisherite-thalfenisite from Noril'sk, Siberia and Salmagorsky, Kola Peninsula, Russia
by Barkov, Andrei Y and Laajoki, Kauko V.O and Gehör, Seppo A and Yakovlev, Yuri N and Taikina-Aho, Olavi
Canadian Mineralogist, ISSN 0008-4476, 12/1997, Volume 35, Issue 6, pp. 1421 - 1430
Chlorine-poor (0-0.2 wt.% Cl) potassium-thallium-lead sulfides (analogues of djerfisherite-thalfenisite, ADT) occur as minute (5 - 30 mu m) subhedral... 
Alkaline ultramafic complex | Lead-bearing sulfide | Salmagorsky | Argentopentlandite | Cu-Ni ore | Base-metal sulfide | Kola Peninsula | Djerfisherite group | Potassium sulfide | Oktyabrsky | Russia | Noril'sk | Thallium sulfide | base-metal sulfide | argentopentlandite | (BA,PB)(CU,FE,NI)S-27 | alkaline ultramafic complex | potassium sulfide | KIMBERLITE | lead-bearing sulfide | OWENSITE | djerfisherite group | thallium sulfide | MINERALOGY
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16. Individual strategies for breast cancer surveillance based on aggregated familial information annual report, 1 Jan. 2000-31 Dec. 2000
by Yakovlev, Andrei Y
STAR, ISSN 1548-8837, 08/2001, Volume 39
The problem of optimal cancer surveillance is set up as a search for optimal scheduling of medical examinations throughout the lifetime of an individual.... 
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17. Full Text Effect of Screening and Adjuvant Therapy on Mortality From Breast Cancer
by Berry, Donald A and Cronin, Kathleen A and Plevritis, Sylvia and Fryback, Dennis G and Clarke, Lauren and Zelen, Marvin and Mandelblatt, Jeanne S and Yakovlev, Andrei Y and Habbema, J Dik F and Feuer, Eric
Obstetrical & Gynecological Survey, ISSN 0029-7828, 03/2006, Volume 61, Issue 3, pp. 179 - 180
In several countries, a drop in mortality from breast cancer has been documented starting in 1975. Both early detection by mammographic screening and advances... 
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18. Full Text A survival model for fractionated radiotherapy with an application to prostate cancer
by Zaider, Marco and Zelefsky, Michael J and Hanin, Leonid G and Tsodikov, Alexander D and Yakovlev, Andrei Y and Leibel, Steven A
Physics in Medicine and Biology, ISSN 0031-9155, 10/2001, Volume 46, Issue 10, pp. 2745 - 2758
This paper explores the applicability of a mechanistic survival model, based on the distribution of clonogens surviving a course of fractionated radiation... 
BREAST-CANCER | REGRESSION | IRRADIATED TUMORS | HAZARD FUNCTION | PROBABILITY | STATISTICS | ENGINEERING, BIOMEDICAL | RECURRENCE | TIME | RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING | DOSE-CURE RELATIONSHIPS | RADIATION-THERAPY | Recurrence | Prostatic Neoplasms - radiotherapy | Prognosis | Humans | Male | Treatment Outcome | Models, Statistical | Prostatic Neoplasms - diagnosis | Prostatic Neoplasms - mortality | Disease-Free Survival | Dose Fractionation, Radiation | Time Factors | Radiotherapy - methods | Dose-Response Relationship, Radiation
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19. Multivariate exploratory tools for microarray data analysis
by Szabo, Aniko and Boucher, Kenneth and Jones, David and Tsodikov, Alexander D and Klebanov, Lev B and Yakovlev, Andrei Y
Biostatistics, ISSN 1465-4644, 01/2003, Volume 4, Issue 4, pp. 555 - 555
The ultimate success of microarray technology in basic and applied biological sciences depends critically on the development of statistical methods for gene... 
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20. Full Text Analysis of a Hormesis Effect in the Leukemia-Caused Mortality Among Atomic Bomb Survivors
by Tsodikov, Alexander and Dicello, John and Zaider, Marco and Zorin, Alexander and Yakovlev, Andrei Y
Human and Ecological Risk Assessment: An International Journal, ISSN 1080-7039, 06/2001, Volume 7, Issue 4, pp. 829 - 847
Yakovlev and Polig (1996) developed a mechanistically motivated stochastic model of radiation carcinogenesis allowing for cell death. The key feature of the... 
stochastic modeling | leukemia | statistical analysis | survivors | atomic bomb | radiation hormesis | Radiation hormesis | Atomic bomb | Statistical analysis | Stochastic modeling | Leukemia | Survivors | TIME | PARAMETERS | INDUCTION | CELL-DEATH | STOCHASTIC-MODEL | RADIATION CARCINOGENESIS | HAZARD FUNCTION | ENVIRONMENTAL SCIENCES | CLONAL EXPANSION MODEL | MULTIPLE TUMORIGENESIS | URETHANE
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