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by Jiang, Yuxiang and Oron, Tal Ronnen and Clark, Wyatt T and Bankapur, Asma R and Anea, D', Daniel and Lepore, Rosalba and Funk, Christopher S and Kahanda, Indika and Verspoor, Karin M and Ben-Hur, Asa and Koo, Da Chen Emily and Penfold-Brown, Duncan and Shasha, Dennis and Youngs, Noah and Bonneau, Richard and Lin, Alexana and Sahraeian, Sayed M.E and Martelli, Pier Luigi and ti, Giuseppe and Casadio, Rita and Cao, Renzhi and Zhong, Zhaolong and Cheng, Jianlin and Altenhoff, Aian and Skunca, Nives and Dessimoz, Christophe and Dogan, Tunca and Hakala, Kai and Kaewphan, Suwisa and Mehryary, Farrokh and Salakoski, Tapio and Ginter, Filip and Fang, Hai and Smithers, Ben and Oates, Matt and Gough, Julian and Törönen, Petri and Koskinen, Patrik and Holm, Liisa and Chen, Ching Tai and Hsu, Wen Lian and Bryson, Kevin and Cozzetto, Domenico and Minneci, Federico and Jones, David T and Chapman, Samuel and BKC, Dukka and Khan, Ishita K and Kihara, Daisuke and Ofer, Dan and Rappoport, Nadav and Stern, Amos and Cibrian-Uhalte, Elena and Denny, Paul and Foulger, Rebecca E and Hieta, Reija and Legge, Duncan and Lovering, Ruth C and Magrane, Michele and Melidoni, Anna N and Mutowo-Meullenet, Prudence and Pichler, Klemens and Shypitsyna, Aleksana and Li, Biao and Zakeri, Pooya and ElShal, Sarah and Tranchevent, Léon Charles and Das, Sayoni and Dawson, Natalie L and Lee, David and Lees, Jonathan G and Sillitoe, Ian and Bhat, Prajwal and Nepusz, Tamás and Romero, Alfonso E and Sasidharan, Rajkumar and Yang, Haixuan and Paccanaro, Alberto and Gillis, Jesse and Sedeño-Cortés, Aiana E and Pavlidis, Paul and Feng, Shou and Cejuela, Juan M and Goldberg, Tatyana and Hamp, Tobias and Richter, Lothar and Salamov, Asaf and Gabaldon, Toni and Marcet-Houben, Marina and Supek, Fran and Gong, Qingtian and Ning, Wei and Zhou, Yuanpeng and Tian, Weidong and Falda, Marco and Fontana, Paolo and Lavezzo, Enrico and Toppo, Stefano and Ferrari, Carlo and Giollo, Manuel and ...
Genome Biology, ISSN 1474-7596, 2016, Volume 17, Issue 1, p. 184
Journal Article
PLoS Computational Biology, ISSN 1553-734X, 06/2014, Volume 10, Issue 6
  Negative examples - genes that are known not to carry out a given protein function - are rarely recorded in genome and proteome annotation databases, such as... 
Proteins | Studies | Algorithms | Teaching methods | Ontology | Genes | Genomes | Data bases | Heuristic
Journal Article
Protein Engineering, Design and Selection, ISSN 1741-0126, 09/2018, Volume 31, Issue 9, pp. 345 - 354
Abstract A wide variety of protein and peptidomimetic design tasks require matching functional 3D motifs to potential oligomeric scaffolds. For example, during... 
octree | DE-NOVO DESIGN | PROTEIN | loop modeling | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | COMPUTATIONAL DESIGN | BIOCHEMISTRY & MOLECULAR BIOLOGY | metal binding | enzyme design | foldamer | PREDICTION | Methods
Journal Article
01/2014, ISBN 9781321375268
With the recent proliferation of large, unlabeled data sets, a particular subclass of semisupervised learning problems has become more prevalent. Known as... 
Computer science | Bioinformatics
Dissertation
by Jiang, Yuxiang and Oron, Ronnen Tal and Clark, T Wyatt and Bankapur, R Asma and D’Andrea, Daniel and Lepore, Rosalba and Funk, S Christopher and Kahanda, Indika and Verspoor, M Karin and Ben-Hur, Asa and Koo, Emily Da Chen and Penfold-Brown, Duncan and Shasha, Dennis and Youngs, Noah and Bonneau, Richard and Lin, Alexandra and Sahraeian, E Sayed M and Martelli, Luigi Pier and Profiti, Giuseppe and Casadio, Rita and Cao, Renzhi and Zhong, Zhaolong and Cheng, Jianlin and Altenhoff, Adrian and Skunca, Nives and Dessimoz, Christophe and Dogan, Tunca and Hakala, Kai and Kaewphan, Suwisa and Mehryary, Farrokh and Salakoski, Tapio and Ginter, Filip and Fang, Hai and Smithers, Ben and Oates, Matt and Gough, Julian and Törönen, Petri and Koskinen, Patrik and Holm, Liisa and Chen, Ching-Tai and Hsu, Wen-Lian and Bryson, Kevin and Cozzetto, Domenico and Minneci, Federico and Jones, T David and Chapman, Samuel and BKC, Dukka and Khan, K Ishita and Kihara, Daisuke and Ofer, Dan and Rappoport, Nadav and Stern, Amos and Cibrian-Uhalte, Elena and Denny, Paul and Foulger, E Rebecca and Hieta, Reija and Legge, Duncan and Lovering, C Ruth and Magrane, Michele and Melidoni, N Anna and Mutowo-Meullenet, Prudence and Pichler, Klemens and Shypitsyna, Aleksandra and Li, Biao and Zakeri, Pooya and ElShal, Sarah and Tranchevent, Léon-Charles and Das, Sayoni and Dawson, L Natalie and Lee, David and Lees, G Jonathan and Sillitoe, Ian and Bhat, Prajwal and Nepusz, Tamás and Romero, E Alfonso and Sasidharan, Rajkumar and Yang, Haixuan and Paccanaro, Alberto and Gillis, Jesse and Sedeño-Cortés, E Adriana and Pavlidis, Paul and Feng, Shou and Cejuela, M Juan and Goldberg, Tatyana and Hamp, Tobias and Richter, Lothar and Salamov, Asaf and Gabaldon, Toni and Marcet-Houben, Marina and Supek, Fran and Gong, Qingtian and Ning, Wei and Zhou, Yuanpeng and Tian, Weidong and Falda, Marco and Fontana, Paolo and Lavezzo, Enrico and Toppo, Stefano and Ferrari, Carlo and Giollo, Manuel and ...
ISSN 1474-7596, 2016
Background: A major bottleneck in our understanding of the molecular underpinnings of life is the assignment of function to proteins. While molecular... 
disease gene prioritization | protein function prediction
Journal Article
2015 IEEE International Conference on Data Mining Workshop (ICDMW), 11/2015, pp. 639 - 645
Positive-Unlabeled (PU) learning scenarios are a class of semi-supervised learning where only a fraction of the data is labeled, and all available labels are... 
Training | Proteins | Algorithm design and analysis | Support vector machines | Semi-Supervised Learning | Tagging | Probability | Positive-Unlabeled Learning | Labeling | Machine Learning | Learning | State of the art | Algorithms | Conferences | Bias | Feasibility | Labels | Marking
Conference Proceeding
Book
Journal Article
2005, ISBN 9780870032110, viii, 302
Book
04/2019
The president had blamed Ms. Nielsen for the rise in migrants who illegally entered the United States even though she supported his hard-line immigration... 
Nominations | Immigration policy | Political appointments | National security | Presidents
Web Resource
Boston Globe, ISSN 0743-1791, 10/2014
  After Brockton's Kerry Raymond scored on the game's opening drive, the Xaverian offensive line cleared the way for Farrell's 74-yard touchdown run on the... 
Professional football | Athletes
Newspaper Article
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