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acyclic, carbocyclic or heterocyclic compounds containingelements other than carbon, hydrogen, halogen, oxygen, nitrogen,sulfur, selenium or tellurium (2) 2
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1. Full Text An acetylome peptide microarray reveals specificities and deacetylation substrates for all human sirtuin isoforms
by Rauh, David and Fischer, Frank and Gertz, Melanie and Lakshminarasimhan, Mahadevan and Bergbrede, Tim and Aladini, Firouzeh and Kambach, Christian and Becker, Christian F. W and Zerweck, Johannes and Schutkowski, Mike and Steegborn, Clemens
Nature Communications, ISSN 2041-1723, 2013, Volume 4, Issue 1, p. 2327
Sirtuin enzymes regulate metabolism and aging processes through deacetylation of acetyl-lysines in target proteins. More than 6,800 mammalian acetylation sites... 
TARGETS | STRUCTURAL BASIS | MITOCHONDRIAL | MULTIDISCIPLINARY SCIENCES | CALORIE RESTRICTION | Amino Acid Sequence | Enzyme-Linked Immunosorbent Assay | Peptides - chemistry | Signal Transduction | Humans | Fluorescence | Models, Molecular | Molecular Sequence Data | Substrate Specificity | Proteome - chemistry | Peptides - metabolism | Protein Isoforms - metabolism | Sirtuins - chemistry | Protein Isoforms - chemistry | Protein Array Analysis | Acetylation | Binding Sites | Proteome - metabolism | Sirtuins - metabolism
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2. Full Text Plasma IgG to Linear Epitopes in the V2 and V3 Regions of HIV-1 gp120 Correlate with a Reduced Risk of Infection in the RV144 Vaccine Efficacy Trial
by Gottardo, Raphael and Bailer, Robert T and Korber, Bette T and Gnanakaran, S and Phillips, Joshua and Shen, Xiaoying and Tomaras, Georgia D and Turk, Ellen and Imholte, Gregory and Eckler, Larry and Wenschuh, Holger and Zerweck, Johannes and Greene, Kelli and Gao, Hongmei and Berman, Phillip W and Francis, Donald and Sinangil, Faruk and Lee, Carter and Nitayaphan, Sorachai and Rerks-Ngarm, Supachai and Kaewkungwal, Jaranit and Pitisuttithum, Punnee and Tartaglia, James and Robb, Merlin L and Michael, Nelson L and Kim, Jerome H and Zolla-Pazner, Susan and Haynes, Barton F and Mascola, John R and Self, Steve and Gilbert, Peter and Montefiori, David C
PLoS ONE, ISSN 1932-6203, 09/2013, Volume 8, Issue 9, p. e75665
Neutralizing and non-neutralizing antibodies to linear epitopes on HIV-1 envelope glycoproteins have potential to mediate antiviral effector functions that... 
DEPENDENT CELLULAR CYTOTOXICITY | RECOMBINANT GLYCOPROTEIN-120 VACCINE | CONFORMATIONAL EPITOPE | NEUTRALIZING ANTIBODIES | BROAD NEUTRALIZATION | CD4 BINDING-SITE | MULTIDISCIPLINARY SCIENCES | ENVELOPE PROTEIN | HUMAN-IMMUNODEFICIENCY-VIRUS | HUMAN MONOCLONAL-ANTIBODIES | TRANSMEMBRANE PROTEIN | HIV Antibodies - blood | HIV Envelope Protein gp120 - genetics | HIV Infections - prevention & control | Immunoglobulin G - blood | HIV Envelope Protein gp41 - immunology | Humans | AIDS Vaccines - immunology | Molecular Sequence Data | Risk | Case-Control Studies | Epitopes - immunology | HIV Envelope Protein gp120 - immunology | HIV Infections - immunology | Antibodies, Neutralizing - immunology | HIV Antibodies - immunology | Immunoglobulin G - immunology | HIV Infections - blood | Amino Acid Sequence | HIV-1 - genetics | Antigens, Viral - immunology | HIV-1 - immunology | Sequence Alignment | B-Lymphocytes - immunology | Immunoglobulin A - immunology | Antibodies, Neutralizing - blood | Medical research | Medical colleges | AIDS vaccines | Peptides | Immunoglobulin G | Clinical trials | Glycoproteins | HIV (Viruses) | Risk factors | Infection | Medicine, Experimental | Health aspects | Antigenic determinants | Correlation | Laboratories | Antibodies | Viruses | Cytotoxicity | Biology | Infections | Vaccines | Immunoglobulin A | Human immunodeficiency virus--HIV | Public health | Recombinant | Antigens | Immunoglobulins | Immune response | Effectiveness | Glycoprotein gp41 | Research & development--R&D | Health risks | Risk reduction | Epitopes | Biophysics | Glycoprotein gp160 | Infectious diseases | Lymphocytes B | Neutralizing | Glycoprotein gp120 | Cancer | Research & development | R&D | HIV | Human immunodeficiency virus
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3. Full Text Building ProteomeTools based on a complete synthetic human proteome
by Zolg, Daniel P and Wilhelm, Mathias and Schnatbaum, Karsten and Zerweck, Johannes and Knaute, Tobias and Delanghe, Bernard and Bailey, Derek J and Gessulat, Siegfried and Ehrlich, Hans-Christian and Weininger, Maximilian and Yu, Peng and Schlegl, Judith and Kramer, Karl and Schmidt, Tobias and Kusebauch, Ulrike and Deutsch, Eric W and Aebersold, Ruedi and Moritz, Robert L and Wenschuh, Holger and Moehring, Thomas and Aiche, Stephan and Huhmer, Andreas and Reimer, Ulf and Kuster, Bernhard
Nature Methods, ISSN 1548-7091, 02/2017, Volume 14, Issue 3, pp. 259 - 262
We describe ProteomeTools, a project building molecular and digital tools from the human proteome to facilitate biomedical research. Here we report the... 
MAPS | PEPTIDE IDENTIFICATION | ACQUISITION | BIOCHEMICAL RESEARCH METHODS | SPECTROMETRY-BASED PROTEOMICS | MASS-SPECTROMETRY | PREDICTION | Databases, Protein | Humans | Proteome - analysis | Proteomics - methods | Chromatography, Liquid - methods | Tandem Mass Spectrometry - methods | Genome, Human - genetics | Cellular proteins | Properties | Proteomics | Innovations | Computational biology | peptide fragmentation | tandem mass spectrometry | proteomics | protein quantification | reference spectra | bioinformatics | spectral library | ProteomeTools | synthetic peptides | Liquid chromatography | protein identification | reference standards
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4. Full Text PROCAL: A Set of 40 Peptide Standards for Retention Time Indexing, Column Performance Monitoring, and Collision Energy Calibration
by Zolg, Daniel Paul and Wilhelm, Mathias and Yu, Peng and Knaute, Tobias and Zerweck, Johannes and Wenschuh, Holger and Reimer, Ulf and Schnatbaum, Karsten and Kuster, Bernhard
PROTEOMICS, ISSN 1615-9853, 11/2017, Volume 17, Issue 21, pp. 1700263 - n/a
Beyond specific applications, such as the relative or absolute quantification of peptides in targeted proteomic experiments, synthetic spike‐in peptides are... 
Synthetic peptides | LC–MS/MS | Retention time index | Retention time standardization | ProteomeTools | PROTEIN | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOCHEMICAL RESEARCH METHODS | ACCURATE MASS | FRAGMENTATION | MASS-SPECTROMETRY | LC-MS/MS | SPECTRA | PROTEOMICS | Peptide Fragments - analysis | Reference Standards | Tandem Mass Spectrometry - standards | Chromatography, Liquid - standards | Proteomics - standards | Humans | Proteins - analysis | Calibration | HeLa Cells | Proteomics - methods | Chromatography, Liquid - methods | Tandem Mass Spectrometry - methods | Usage | Peptides | Analysis | Chromatography | Laboratories | Data acquisition | Data processing | Hydrophobicity | Retention | Retention time | Standards | Data transfer (computers) | Mass spectrometers | Spectrometers | Proteomics | Monitoring
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5. Full Text Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning
by Gessulat, Siegfried and Schmidt, Tobias and Zolg, Daniel Paul and Samaras, Patroklos and Schnatbaum, Karsten and Zerweck, Johannes and Knaute, Tobias and Rechenberger, Julia and Delanghe, Bernard and Huhmer, Andreas and Reimer, Ulf and Ehrlich, Hans-Christian and Aiche, Stephan and Kuster, Bernhard and Wilhelm, Mathias
Nature methods, ISSN 1548-7091, 06/2019, Volume 16, Issue 6, pp. 509 - 518
In mass-spectrometry-based proteomics, the identification and quantification of peptides and proteins heavily rely on sequence database searching or spectral... 
Post-translational modification | Usage | Peptides | Neural networks | Machine learning | Proteomics | Mass spectrometry | Identification and classification | Methods | Mass spectroscopy | Database searching | Retention time | Tryptic peptides | Data bases | Spectrometry | Trypsin | Databases | Prediction models | Predictions | Libraries | Mass spectra
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6. Full Text Molecular mechanism of synergy between the antimicrobial peptides PGLa and magainin 2
by Zerweck, Jonathan and Strandberg, Erik and Kukharenko, Olga and Reichert, Johannes and Bürck, Jochen and Wadhwani, Parvesh and Ulrich, Anne S
Scientific Reports, ISSN 2045-2322, 12/2017, Volume 7, Issue 1, pp. 1 - 21
PGLa and magainin 2 (MAG2) are amphiphilic alpha-helical membranolytic peptides from frog skin with known synergistic antimicrobial activity. By systematically... 
AMPHIPATHIC HELICAL PEPTIDES | HOST-DEFENSE PEPTIDES | MEMBRANE INTERACTIONS | ANTIBACTERIAL PEPTIDES | LIPID-BILAYERS | TRANSMEMBRANE ALPHA-HELICES | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | STATE NMR-SPECTROSCOPY | HYDROPHOBIC MOMENT | MULTIENZYME COMPLEX | Antimicrobial activity | Nuclear magnetic resonance--NMR | Peptides | Antimicrobial peptides | Antimicrobial agents | Skin | C-Terminus | Hydrophobicity | Magainin 2 | Electrostatic properties
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7. Full Text Serological profiling of the EBV immune response in Chronic Fatigue Syndrome using a peptide microarray
by Loebel, Madlen and Eckey, Maren and Sotzny, Franziska and Hahn, Elisabeth and Bauer, Sandra and Grabowski, Patricia and Zerweck, Johannes and Holenya, Pavlo and Hanitsch, Leif G and Wittke, Kirsten and Borchmann, Peter and Rüffer, Jens-Ulrich and Hiepe, Falk and Ruprecht, Klemens and Behrends, Uta and Meindl, Carola and Volk, Hans-Dieter and Reimer, Ulf and Scheibenbogen, Carmen
PLoS ONE, ISSN 1932-6203, 06/2017, Volume 12, Issue 6, pp. e0179124 - e0179124
Background Epstein-Barr-Virus (EBV) plays an important role as trigger or cofactor for various autoimmune diseases. In a subset of patients with Chronic... 
RHEUMATOID-ARTHRITIS | SYSTEMIC-LUPUS-ERYTHEMATOSUS | CELLS IN-VIVO | NASOPHARYNGEAL CARCINOMA | EPITHELIAL-CELLS | MULTIPLE-SCLEROSIS | MULTIDISCIPLINARY SCIENCES | PERIPHERAL-BLOOD | ANTIBODY-RESPONSES | LYMPHOPROLIFERATIVE DISORDERS | EPSTEIN-BARR-VIRUS | Herpesvirus 4, Human - genetics | Prevalence | Immunoglobulin G - blood | Humans | Middle Aged | Male | Antibodies, Viral - blood | Viral Load | Epitopes - immunology | Immunoglobulin G - immunology | Adult | Female | Epstein-Barr Virus Infections - blood | Enzyme-Linked Immunosorbent Assay | Epstein-Barr Virus Infections - virology | Epstein-Barr Virus Infections - immunology | Herpesvirus 4, Human - immunology | Cross Reactions | Fatigue Syndrome, Chronic - complications | Antigens, Viral - immunology | Fatigue Syndrome, Chronic - blood | Fatigue Syndrome, Chronic - immunology | Biomarkers | Protein Array Analysis | Antibodies, Viral - immunology | Epstein-Barr Virus Infections - complications | Herpesvirus 4, Human - classification | Fatigue Syndrome, Chronic - epidemiology | Usage | Immune response | DNA microarrays | Epstein-Barr virus | Genetic aspects | Research | Chronic fatigue syndrome | Multiple sclerosis | Correlation | Profiling | Peptides | IgG antibody | Memory | Immunoglobulin G | Antibodies | Homology | Viruses | Mapping | Genomes | Infections | Washing | Mimicry | Antibody response | Proteins | Immunology | Systemic lupus erythematosus | Mononucleosis | Human immunodeficiency virus--HIV | Oxidation | Enzyme-linked immunosorbent assay | Immune system | Lupus | Antigens | Immunoglobulins | Amino acid sequence | Fatigue | Gene expression | Patients | Infectious mononucleosis | Pharynx | Diseases | Medicine | Studies | Chronic conditions | Hospitals | Infectious diseases | Serotypes | Lymphomas | Autoimmune diseases | Cancer | Index Medicus | HIV | Human immunodeficiency virus
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8. Full Text Molecular Mechanism of Synergy between the Antimicrobial Peptides PGLa and Magainin 2 in Membranes
by Strandberg, Erik and Zerweck, Jonathan and Wadhwani, Parvesh and Reichert, Johannes and Bürck, Jochen and Ulrich, Anne S
Biophysical Journal, ISSN 0006-3495, 02/2018, Volume 114, Issue 3, pp. 452a - 453a
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9. Full Text Homo- and heteromeric interaction strengths of the synergistic antimicrobial peptides PGLa and magainin 2 in membranes
by Zerweck, Jonathan and Strandberg, Erik and Bürck, Jochen and Reichert, Johannes and Wadhwani, Parvesh and Kukharenko, Olga and Ulrich, Anne S
European Biophysics Journal, ISSN 0175-7571, 9/2016, Volume 45, Issue 6, pp. 535 - 547
PGLa and magainin 2 (MAG2) are amphiphilic α-helical frog peptides with synergistic antimicrobial activity. In vesicle leakage assays we observed the strongest... 
Biochemistry, general | Solid-state NMR | Membrane-active amphiphilic helices | Membrane Biology | Neurobiology | Biophysics and Biological Physics | Cell Biology | Life Sciences | Synergistic antimicrobial peptides | Vesicle leakage assay | Peptide dimerization | Hill coefficients | Nanotechnology | ANTIBACTERIAL PEPTIDES | ESCHERICHIA-COLI | PORE FORMATION | LIPID-BILAYERS | BIOPHYSICS | ORIENTATION | TRANSMEMBRANE HELIX DIMERIZATION | STATE NMR-SPECTROSCOPY | F-19 NMR | PHOSPHOLIPID-BILAYERS | LIPOSOMES | Drug Synergism | Amino Acid Sequence | Thermodynamics | Antimicrobial Cationic Peptides - chemistry | Antimicrobial Cationic Peptides - pharmacology | Cell Membrane - metabolism | Magainins - pharmacology | Cell Membrane - drug effects | Magainins - chemistry | Peptides | Analysis | Antimicrobial agents | Biophysics
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10. Full Text Pattern recognition in pulmonary tuberculosis defined by high content peptide microarray chip analysis representing 61 proteins from M. tuberculosis
by Gaseitsiwe, Simani and Valentini, Davide and Mahdavifar, Shahnaz and Magalhaes, Isabelle and Hoft, Daniel F and Zerweck, Johannes and Schutkowski, Mike and Andersson, Jan and Reilly, Marie and Maeurer, Markus J
PLoS ONE, ISSN 1932-6203, 12/2008, Volume 3, Issue 12, pp. e3840 - e3840
Background: Serum antibody-based target identification has been used to identify tumor-associated antigens (TAAs) for development of anti-cancer vaccines. A... 
MYCOBACTERIUM-TUBERCULOSIS | DIAGNOSIS | T-CELL RESPONSES | GENE | VACCINE | BIOLOGY | CD4(+) | INFECTION | IDENTIFICATION | EXPRESSION | ANTIGEN | Tuberculosis, Pulmonary - microbiology | Immunoglobulins - immunology | Oligonucleotide Array Sequence Analysis | Humans | Epitopes - immunology | Tuberculosis, Pulmonary - blood | Tuberculosis, Pulmonary - immunology | Bacterial Proteins - blood | Tuberculosis, Pulmonary - diagnosis | Protein Array Analysis | Pattern Recognition, Automated | Mycobacterium tuberculosis - metabolism | Cluster Analysis | Proteins | Cancer vaccines | Tuberculosis vaccines | Analysis | Immunoglobulin G | Pulmonary tuberculosis | Health aspects | Antigenic determinants | Cluster analysis | Antigens | Populations | Target recognition | Peptides | Leprosy | Data processing | Biology | Vaccines | Pattern recognition | Epitopes | Gene expression | Epidemiology | Patients | Disease control | Infectious diseases | Immunology | Tuberculosis | Antigen (tumor-associated) | Cancer
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11. Full Text Serotyping of Toxoplasma gondii in cats (Felis domesticus) reveals predominance of type II infections in Germany
by Maksimov, Pavlo and Zerweck, Johannes and Dubey, Jitender P and Pantchev, Nikola and Frey, Caroline F and Maksimov, Aline and Reimer, Ulf and Schutkowski, Mike and Hosseininejad, Morteza and Ziller, Mario and Conraths, Franz J and Schares, Gereon
PLoS ONE, ISSN 1932-6203, 11/2013, Volume 8, Issue 11, p. e80213
Background: Cats are definitive hosts of Toxoplasma gondii and play an essential role in the epidemiology of this parasite. The study aims at clarifying... 
POLYMORPHIC PEPTIDES | RISK-FACTORS | TISSUE DISTRIBUTION | MULTIDISCIPLINARY SCIENCES | HIGHLY MOUSE-VIRULENT | SOUTH-AMERICA | B-CELL EPITOPES | CONGENITAL TOXOPLASMOSIS | GENETIC-CHARACTERIZATION | MICROARRAY EXPERIMENTS | EPIGENETIC FACTORS | Toxoplasma - immunology | Immunoassay | Toxoplasmosis, Animal - blood | Cats | Peptides - immunology | Male | Toxoplasmosis, Animal - epidemiology | Cat Diseases - blood | Antibodies, Protozoan - biosynthesis | Germany - epidemiology | Toxoplasma - classification | Antibodies, Protozoan - blood | Animals | Peptides - chemical synthesis | Immunity, Humoral | Toxoplasmosis, Animal - parasitology | Toxoplasmosis, Animal - immunology | Protein Array Analysis | Antigens, Protozoan - blood | Cat Diseases - immunology | Cat Diseases - parasitology | Female | Cat Diseases - epidemiology | Serotyping | Viral antibodies | Peptides | Analysis | Antibodies | Amino acids | Epidemiology | Protozoa | Laboratories | Infections | Pattern recognition | Parasites | Gene expression | Antibody response | Proteins | Acids | Parasitic diseases | Genetic testing | Bioinformatics | Oocysts | Deoxyribonucleic acid--DNA | Deoxyribonucleic acid | DNA
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12. Full Text Molecular mechanism of synergy between the antimicrobial peptides PGLa and magainin 2
by Zerweck, Jonathan and Strandberg, Erik and Kukharenko, Olga and Reichert, Johannes and Bürck, Jochen and Wadhwani, Parvesh and Ulrich, Anne S
Scientific reports, 10/2017, Volume 7, Issue 1, p. 13153
PGLa and magainin 2 (MAG2) are amphiphilic α-helical membranolytic peptides from frog skin with known synergistic antimicrobial activity. By systematically... 
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