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Biometrics, ISSN 0006-341X, 09/2019, Volume 75, Issue 3, pp. 864 - 874
RNA sequencing allows one to study allelic imbalance of gene expression, which may be due to genetic factors or genomic imprinting (i.e., higher expression of... 
allele‐specific expression | EQTL | imprinting | RNA‐seq | allele-specific expression | RNA-seq | CROSSES | BIOLOGY | MATHEMATICAL & COMPUTATIONAL BIOLOGY | STATISTICS & PROBABILITY | eQTL | EXPRESSION | RNA-SEQ DATA
Journal Article
Nature Genetics, ISSN 1061-4036, 04/2015, Volume 47, Issue 4, pp. 353 - 360
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 04/2018, Volume 46, Issue 6, pp. 3009 - 3018
Journal Article
by Iraqi, Fuad A and Mahajne, Mustafa and Salaymah, Yasser and Sandovski, Hani and Tayem, Hanna and Vered, Karin and Balmer, Lois and Hall, Michael and Manship, Glynn and Morahan, Grant and Pettit, Ken and Scholten, Jeremy and Tweedie, Kathryn and Wallace, Andrew and Weerasekera, Lakshini and Cleak, James and Durrant, Caroline and Goodstadt, Leo and Mott, Richard and Yalcin, Binnaz and Aylor, David L and Baric, Ralph S and Bell, Timothy A and Bendt, Katharine M and Brennan, Jennifer and Brooks, Jackie D and Buus, Ryan J and Crowley, James J and Calaway, John D and Calaway, Mark E and Cholka, Agnieszka and Darr, David B and Didion, John P and Dorman, Amy and Everett, Eric T and Ferris, Martin T and Mathes, Wendy Foulds and Fu, Chen-Ping and Gooch, Terry J and Goodson, Summer G and Gralinski, Lisa E and Hansen, Stephanie D and Heise, Mark T and Hoel, Jane and Hua, Kunjie and Kapita, Mayanga C and Lee, Seunggeun and Lenarcic, Alan B and Liu, Eric Yi and Liu, Hedi and McMillan, Leonard and Magnuson, Terry R and Manly, Kenneth F and Miller, Darla R and O'Brien, Deborah A and Odet, Fanny and Pakatci, Isa Kemal and Pan, Wenqi and de Villena, Fernando Pardo-Manuel and Perou, Charles M and Pomp, Daniel and Quackenbush, Corey R and Robinson, Nashiya N and Sharpless, Norman E and Shaw, Ginger D and Spence, Jason S and Sullivan, Patrick F and Sun, Wei and Tarantino, Lisa M and Valdar, William and Wang, Jeremy and Wang, Wei and Welsh, Catherine E and Whitmore, Alan and Wiltshire, Tim and Wright, Fred A and Xie, Yuying and Yun, Zaining and Zhabotynsky, Vasyl and Zhang, Zhaojun and Zou, Fei and Powell, Christine and Steigerwalt, Jill and Threadgill, David W and Chesler, Elissa J and Churchill, Gary A and Gatti, Daniel M and Korstanje, Ron and Svenson, Karen L and Collins, Francis S and Crawford, Nigel and Hunter, Kent and Samir, N and Kelada, P and Peck, Bailey C. E and Reilly, Karlyne and Tavarez, Urraca and Bottomly, Daniel and Hitzeman, Robert and Mcweeney, Shannon K and ... and Collaborative Cross Consortium
Genetics, ISSN 0016-6731, 02/2012, Volume 190, Issue 2, pp. 389 - 401
Journal Article
Genetics, ISSN 0016-6731, 05/2014, Volume 197, Issue 1, p. 389
  RNA sequencing (RNA-seq) not only measures total gene expression but may also measure allele-specific gene expression in diploid individuals. RNA-seq data... 
Simulation | Rodents | Genomics | Ribonucleic acid--RNA | Gene expression
Journal Article
Genetics, ISSN 0016-6731, 05/2014, Volume 197, Issue 1, pp. 389 - 389
RNA sequencing (RNA-seq) not only measures total gene expression but may also measure allele-specific gene expression in diploid individuals. RNA-seq data... 
Journal Article
Genetics, ISSN 0016-6731, 2014, Volume 197, Issue 1, pp. 389 - 399
RNA sequencing (RNA-seq) not only measures total gene expression but may also measure allele-specific gene expression in diploid individuals. RNA-seq data... 
Genetic Variation | Sequence Analysis, RNA - methods | Animals | Chromosomes, Mammalian - genetics | Hybridization, Genetic | Biostatistics - methods | Female | Inbreeding | Male | Mice | Allelomorphism | Analysis | Dispersion measures (Statistics) | parent-of-origin effect | Xce | imprinting | overdispersion | Investigations | allelic imbalance
Journal Article
Journal of the American Statistical Association, ISSN 0162-1459, 09/2015, Volume 110, Issue 511, p. 975
  We have developed a statistical method named IsoDOT to assess differential isoform expression (DIE) and differential isoform usage (DIU) using RNA-seq data.... 
Simulation | Ribonucleic acid--RNA | Gene expression | Comparative analysis
Journal Article
Journal of the American Statistical Association, ISSN 0162-1459, 09/2015, Volume 110, Issue 511, pp. 975 - 975
We have developed a statistical method named IsoDOT to assess differential isoform expression (DIE) and differential isoform usage (DIU) using RNA-seq data.... 
Ribonucleic acid--RNA | Gene expression
Journal Article
Journal of the American Statistical Association, ISSN 0162-1459, 07/2015, Volume 110, Issue 511, pp. 975 - 986
We have developed a statistical method named IsoDOT to assess differential isoform expression (DIE) and differential isoform usage (DIU) using RNA-seq data.... 
Differential isoform expression | Isoform | Penalized regression | RNA-seq | Differential isoform usage | REGRESSION | SEQ DATA | TRANSCRIPTOME | LANDSCAPE | QUANTIFICATION | SCHIZOPHRENIA | STATISTICS & PROBABILITY | GENE | LASSO | SELECTION | SNAP-25 | differential isoform usage | differential isoform expression | penalized regression | isoform
Journal Article
G3: Genes, Genomes, Genetics, ISSN 2160-1836, 02/2012, Volume 2, Issue 2, pp. 203 - 211
Mouse models play a crucial role in the study of human behavioral traits and diseases. Variation of gene expression in brain may play a critical role in... 
Mouse Genetic Resource | Mouse Collaborative Cross | Mouse | Sequence variation | Forebrain | Hindbrain | Whole brain | Gene expression | LABORATORY MOUSE | COLLABORATIVE CROSS | POPULATION | BEHAVIOR | INBRED STRAINS | GENETICS & HEREDITY | MICE | DIVERSITY | SUBSPECIFIC ORIGIN | GENOME
Journal Article
05/2017
RNA sequencing allows one to study allelic imbalance of gene expression, which may be due to genetic factors or genomic imprinting. It is desirable to model... 
Journal Article
02/2014
We have developed a statistical method named IsoDOT to assess differential isoform expression (DIE) and differential isoform usage (DIU) using RNA-seq data.... 
Journal Article
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