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1. Full Text DbSUPER: A database of Super-enhancers in mouse and human genome
by Khan, Aziz and Zhang, Xuegong
Nucleic acids research, ISSN 0305-1048, 2016, Volume 44, Issue 1, pp. D164 - D171
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Animals | Enhancer Elements, Genetic | Genomics | Humans | Mice | Software | Internet | Genome, Human | Databases, Nucleic Acid | Index Medicus | Database Issue
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2. Full Text Single-cell alternative splicing analysis reveals dominance of single transcript variant
by Liu, Wendao and Zhang, Xuegong
Genomics (San Diego, Calif.), ISSN 0888-7543, 05/2020, Volume 112, Issue 3, pp. 2418 - 2425
Alternative splicing | Transcript variant expression | RNA-seq | Single cell analysis | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Index Medicus
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3. Full Text Integrating gene expression and protein-protein interaction network to prioritize cancer-associated genes
by Wu, Chao and Zhu, Jun and Zhang, Xuegong
BMC bioinformatics, ISSN 1471-2105, 07/2012, Volume 13, Issue 1, pp. 182 - 182
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Biochemical Research Methods | Science & Technology | Mathematical & Computational Biology | Lung Neoplasms - genetics | Gene Expression | Carcinoma, Non-Small-Cell Lung - genetics | Genes, Neoplasm | Humans | Lung Neoplasms - metabolism | Carcinoma, Non-Small-Cell Lung - metabolism | Gene Expression Profiling | Gene Regulatory Networks | Breast Neoplasms - metabolism | Protein Interaction Mapping | Breast Neoplasms - genetics | Female | Medical research | Lung cancer | Genes | Medicine, Experimental | Genetic aspects | Gene expression | Protein-protein interactions | Interactomes | Cancer | Studies | Disease | Ratings & rankings | Bias | Cell cycle | Breast cancer | Bioinformatics | Manuscripts | Methods | Index Medicus | Integration | Data processing | Protein interaction | Computer programs
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4. Full Text Hierarchical NiCo2O4 Hollow Microcuboids as Bifunctional Electrocatalysts for Overall Water‐Splitting
by Gao, Xuehui and Zhang, Hongxiu and Li, Quanguo and Yu, Xuegong and Hong, Zhanglian and Zhang, Xingwang and Liang, Chengdu and Lin, Zhan
Angewandte Chemie (International ed.), ISSN 1433-7851, 05/2016, Volume 55, Issue 21, pp. 6290 - 6294
electrochemistry | water splitting | NiCo2O4 | solvothermal synthesis | Physical Sciences | Chemistry | Chemistry, Multidisciplinary | Science & Technology | Electrochemistry | Electrochemical reactions | Electrolytes | Catalysts | Hydrogen | Electrodes | Splitting | Electrode materials | Water splitting | Electrocatalysts | Hydrogen evolution | Nickel compounds | Nickel | Chemical evolution
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5. Full Text DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
by Wang, Likun and Feng, Zhixing and Wang, Xi and Wang, Xiaowo and Zhang, Xuegong
Bioinformatics, ISSN 1367-4803, 1/2010, Volume 26, Issue 1, pp. 136 - 138
Statistics & Probability | Biochemistry & Molecular Biology | Physical Sciences | Computer Science, Interdisciplinary Applications | Life Sciences & Biomedicine | Technology | Biochemical Research Methods | Computer Science | Mathematics | Biotechnology & Applied Microbiology | Science & Technology | Mathematical & Computational Biology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | General aspects | Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) | Sequence Analysis, RNA - methods | Algorithms | Oligonucleotide Array Sequence Analysis - methods | Base Sequence | Molecular Sequence Data | Programming Languages | Gene Expression Profiling - methods | Software | RNA - genetics | Index Medicus
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6. Full Text Integrative modeling reveals key chromatin and sequence signatures predicting super-enhancers
by Khan, Aziz and Zhang, Xuegong
Scientific reports, ISSN 2045-2322, 2019
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7. Full Text Integrative modeling reveals key chromatin and sequence signatures predicting super-enhancers
by Khan, Aziz and Zhang, Xuegong
Scientific reports, ISSN 2045-2322, 02/2019, Volume 9, Issue 1, pp. 2877 - 2877
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Learning algorithms | Enhancers | Animal models | Chromatin | Lymphocytes B | Prediction models | Transcription | Embryo cells | Stem cells | Stem cell transplantation | Smad3 protein | Index Medicus
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8. Full Text Making genome browsers portable and personal
by Khan, Aziz and Zhang, Xuegong
Genome Biology, ISSN 1474-7596, 07/2018, Volume 19, Issue 1, pp. 93 - 93
Genomic interaction | Visualization | Genome browser | Algorithm | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Medical research | Algorithms | Laboratories | User interface | Biology | Genomes | Web sites | Bioinformatics | Index Medicus
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9. Full Text Hierarchical NiCo 2 O 4 hollow microcuboids as bifunctional electrocatalysts for overall water-splitting
by Gao, Xuehui and Zhang, Hongxiu and Li, Quanguo and Yu, Xuegong and Hong, Zhanglian and Zhang, Xingwang and Liang, Chengdu and Lin, Zhan
Angewandte Chemie (International ed.), ISSN 1433-7851, 05/2016, Volume 55, Issue 21, pp. 6290 - 6294
NiCo | electrochemistry | water splitting | solvothermal synthesis
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10. Full Text Estimating the total genome length of a metagenomic sample using k-mers
by Hua, Kui and Zhang, Xuegong
BMC genomics, ISSN 1471-2164, 04/2019, Volume 20, Issue Suppl 2, pp. 183 - 183
Algorithms | Datasets as Topic | Microbiota - genetics | Humans | Metagenomics - methods | High-Throughput Nucleotide Sequencing | Software | Metagenome | Sequence Analysis, DNA | Analysis | Genomics | Genomes | Microbiota (Symbiotic organisms) | Research | Nucleic acids | Microorganisms | Composition | Taxonomy | Communities | Redundancy | Estimation | Microbiomes | Data processing | Bioinformatics | Methods | Gene sequencing | Index Medicus | Metagenomics | Sequencing coverage | Genome length | Distinct k-mers
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11. Full Text A survey of best practices for RNA-seq data analysis
by Conesa, Ana and Madrigal, Pedro and Tarazona, Sonia and Gomez-Cabrero, David and Cervera, Alejandra and McPherson, Andrew and Szcześniak, Michal Wojciech and Gaffney, Daniel J and Elo, Laura L and Zhang, Xuegong and Mortazavi, Ali
Genome Biology, ISSN 1474-7596, 01/2016, Volume 17, Issue 1, pp. 13 - 13
Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Sequence Analysis, RNA - methods | Gene Fusion - genetics | Alternative Splicing - genetics | Base Sequence | Genomics | Gene Expression Profiling | Software | High-Throughput Nucleotide Sequencing - methods | RNA - genetics | Alternative splicing | Data analysis | Transcription | Data processing | Principal components analysis | Genomes | Gene expression | Ribonucleic acid--RNA | Gene fusion | Consortia | Quality standards | Quality control | Gene mapping | Bioinformatics | Index Medicus | Review | Medicin och hälsovetenskap
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12. Full Text Computational prediction of associations between long non-coding RNAs and proteins
by Lu, Qiongshi and Ren, Sijin and Lu, Ming and Zhang, Yong and Zhu, Dahai and Zhang, Xuegong and Li, Tingting
BMC genomics, ISSN 1471-2164, 09/2013, Volume 14, Issue 1, pp. 651 - 651
RNA-protein interaction | Computation | Long non-coding RNA | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Amino Acid Sequence | Computational Biology - methods | Reproducibility of Results | Base Sequence | Humans | Protein Binding | Nuclear Proteins - metabolism | Nuclear Proteins - genetics | Databases, Nucleic Acid | RNA, Long Noncoding - metabolism | Genetic Vectors - genetics | RNA-Binding Proteins - metabolism | RNA sequencing | Binding proteins | Studies | Databases | Searches | RNA-protein interactions