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The Journal of Chemical Physics, ISSN 0021-9606, 11/2018, Volume 149, Issue 17, p. 174903
In this work, we investigated whether a series of nanopores connected by channels can be used to separate polymer mixtures by molecular size. We conducted... 
CHEMISTRY, PHYSICAL | TRANSLOCATION | LONG DNA-MOLECULES | ELECTROPHORESIS | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | Separation | Porosity | Computer simulation | Polymers | Beads | Channels
Journal Article
Soft Matter, ISSN 1744-683X, 2018, Volume 14, Issue 40, pp. 8160 - 8171
Journal Article
ACS Nano, ISSN 1936-0851, 2019, Volume 13, Issue 2, pp. 1019 - 1028
This study demonstrates that pH-responsive polymers have a very high buffering capacity in their immediate vicinity, a phenomenon termed "nanobuffering". This... 
affinity precipitation | immunoglobulin | pH-responsive polymer | monoclonal antibody | nanobuffering | perchlorate | MECHANISM | MATERIALS SCIENCE, MULTIDISCIPLINARY | IGG | CHEMISTRY, PHYSICAL | NANOSCIENCE & NANOTECHNOLOGY | CHEMISTRY, MULTIDISCIPLINARY | STAPHYLOCOCCAL PROTEIN-A | AFFINITY | PURIFICATION | RESPONSIVE POLYMERS | IMMUNOGLOBULIN-G | BINDING
Journal Article
Physical Review Letters, ISSN 0031-9007, 02/2018, Volume 120, Issue 7, p. 078101
Measurements and Langevin dynamics simulations of filamentous viruses driven through solid-state nanopores reveal a superlinear rise in the translocation... 
SOLID-STATE NANOPORES | BACTERIOPHAGES | FORCE | PHYSICS, MULTIDISCIPLINARY | DNA TRANSLOCATION | POLYMER TRANSLOCATION | SIMULATION | LIVING CELLS
Journal Article
ELECTROPHORESIS, ISSN 0173-0835, 10/2017, Volume 38, Issue 19, pp. 2488 - 2497
Journal Article
Molecular pharmacology, ISSN 0026-895X, 11/2018, Volume 94, Issue 5, pp. 1289 - 1297
Nematodes exhibit a vast array of cys-loop ligand-gated ion channels with unique pharmacologic characteristics. However, many of the structural components that... 
HAEMONCHUS-CONTORTUS | ACTIVATION | CHANNEL | PHARMACOLOGY | SENSITIVITY | AUTOMATION | PHARMACOLOGY & PHARMACY | GENERAL FORCE-FIELD | XENOPUS OOCYTES | RESIDUES | SUBUNIT
Journal Article
RSC Advances, ISSN 2046-2069, 2018, Volume 8, Issue 28, pp. 15675 - 15686
The ability to form complex 3D architectures using nanoparticles (NPs) as the building blocks and complex macromolecules that direct these assemblies remains a... 
FUNCTIONALIZATION | UNIVERSALITY | PARTICLES | COLLOID AGGREGATION | MOLECULAR-DYNAMICS SIMULATIONS | ADSORPTION | PROTEINS | METAL NANOPARTICLES | NANOWIRES | CHEMISTRY, MULTIDISCIPLINARY | TEMPLATES | Gold | Computer simulation | Macromolecules | Substitution reactions | Molecular dynamics | Nanomaterials | Iron | Nanoparticles | Blue shift | Reaction kinetics | Hemoglobin | Ligands | Assemblies | Nanotechnology
Journal Article
Physical Review Letters, ISSN 0031-9007, 01/2013, Volume 110, Issue 4, p. 048101
Using simulation and analytical techniques, we demonstrate that it is possible to extract structural information about biological molecules by monitoring the... 
DYNAMICS | COPOLYMERS | PHYSICS, MULTIDISCIPLINARY | SIMULATION | DNA | Biopolymers - chemistry | Thermodynamics | DNA - chemistry | Models, Chemical | Protein Structure, Secondary | Computer Simulation | Molecular Conformation | Proteins - chemistry | Nucleic Acid Conformation | Nanopores - ultrastructure
Journal Article
RSC Advances, ISSN 2046-2069, 2018, Volume 8, Issue 28, pp. 15675 - 15686
Journal Article
ELECTROPHORESIS, ISSN 0173-0835, 03/2015, Volume 36, Issue 5, pp. 682 - 691
Journal Article
Biophysical Journal, ISSN 0006-3495, 11/2016, Volume 111, Issue 10, p. 2263
  Bacteria such as Pseudomonas aeruginosa use type IV pili to move across surfaces. The pili extend, attach to the surface, and then retract to move the... 
Simulation | Bacteria | Biophysics | Substrates
Journal Article
Magnetic resonance in medicine, 12/2011, Volume 66, Issue 6, p. 1759
The effects of including a hydrophilic coating around the particles are studied across a wide range of particle sizes by performing Monte Carlo simulations of... 
Protons | Magnetite Nanoparticles - chemistry | Models, Chemical | Computer Simulation | Coated Materials, Biocompatible - chemistry | Hydrophobic and Hydrophilic Interactions | Contrast Media - chemistry | Materials Testing | Spin Labels | Magnetics
Journal Article
Soft Matter, ISSN 1744-683X, 10/2018, Volume 14, Issue 4, pp. 816 - 8171
Red blood cells suspended in quiescent plasma tend to aggregate into multicellular assemblages, including linearly stacked columnar rouleaux, which can... 
Self assembly | Computer simulation | Macromolecules | Blood cells | Erythrocytes | Hematocrit | Biophysics | Topology | Mathematical morphology | Dispersion | Self-assembly | Depletion | Red blood cells | Aggregates | Morphology | Clusters | Columns (structural)
Journal Article
Biophysical Journal, ISSN 0006-3495, 11/2016, Volume 111, Issue 10, pp. 2263 - 2273
Bacteria such as use type IV pili to move across surfaces. The pili extend, attach to the surface, and then retract to move the bacteria forward. In this... 
MOLECULAR-DYNAMICS | BACTERIAL TWITCHING MOTILITY | BIOPHYSICS | BIOFILMS | BINDING DOMAIN | DIFFUSION | RETRACTION | MICROSCOPY | ADHESIN | MINOR PILINS | SURFACES | Probability | Models, Biological | Pseudomonas aeruginosa - metabolism | Fimbriae, Bacterial - metabolism | Pseudomonas aeruginosa | Bacteria | Models | Analysis | Cell Biophysics
Journal Article
ACS Nano, ISSN 1936-0851, 04/2011, Volume 5, Issue 4, pp. 3104 - 3112
Clusters of iron oxide nanoparticles encapsulated in a pH-responsive hydrogel are synthesized and studied for their ability to alter the T(2)-relaxivity of... 
transverse relaxation | hydrogel | pH-responsive | superparamagnetic iron oxide nanoparticles | contrast agent | particle coating
Journal Article
Nature Communications, ISSN 2041-1723, 06/2014, Volume 5, Issue 1, p. 4171
Journal Article
The Journal of Chemical Physics, ISSN 0021-9606, 10/2016, Volume 145, Issue 15, p. 154902
Langevin dynamics simulations of the capture of polymers by a nanopore and the subsequent translocation through the nanopore are performed. These simulations... 
SOLID-STATE NANOPORES | MONTE-CARLO | CHAIN | DNA | PORE | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | CHEMISTRY, PHYSICAL | MOLECULAR-DYNAMICS SIMULATION
Journal Article
Physical Review Letters, ISSN 0031-9007, 02/2018, Volume 120, Issue 7, p. 078101
Measurements and Langevin dynamics simulations of filamentous viruses driven through solid-state nanopores reveal a superlinear rise in the translocation... 
Viscous drag | Solid mechanics | Nonlinear dynamics | Compressive properties | Drag | Polyelectrolytes | Viruses | Porosity | Buckling
Journal Article
Physical Review Letters, ISSN 0031-9007, 01/2013, Volume 110, Issue 4
Journal Article
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