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1. Full Text Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus
by de Vries, Ronald P and Riley, Robert and Wiebenga, Ad and Aguilar-Osorio, Guillermo and Amillis, Sotiris and Uchima, Cristiane Akemi and Anderluh, Gregor and Asadollahi, Mojtaba and Askin, Marion and Barry, Kerrie and Battaglia, Evy and Bayram, Özgür and Benocci, Tiziano and Braus-Stromeyer, Susanna A and Caldana, Camila and Cánovas, David and Cerqueira, Gustavo C and Chen, Fusheng and Chen, Wanping and Choi, Cindy and Clum, Alicia and dos Santos, Renato Augusto Corrêa and de Lima Damásio, André Ricardo and Diallinas, George and Emri, Tamás and Fekete, Erzsébet and Flipphi, Michel and Freyberg, Susanne and Gallo, Antonia and Gournas, Christos and Habgood, Rob and Hainaut, Matthieu and Harispe, María Laura and Henrissat, Bernard and Hildén, Kristiina S and Hope, Ryan and Hossain, Abeer and Karabika, Eugenia and Karaffa, Levente and Karányi, Zsolt and Kraševec, Nada and Kuo, Alan and Kusch, Harald and LaButti, Kurt and Lagendijk, Ellen L and Lapidus, Alla and Levasseur, Anthony and Lindquist, Erika and Lipzen, Anna and Logrieco, Antonio F and MacCabe, Andrew and Mäkelä, Miia R and Malavazi, Iran and Melin, Petter and Meyer, Vera and Mielnichuk, Natalia and Miskei, Márton and Molnár, Ákos P and Mulé, Giuseppina and Ngan, Chew Yee and Orejas, Margarita and Orosz, Erzsébet and Ouedraogo, Jean Paul and Overkamp, Karin M and Park, Hee-Soo and Perrone, Giancarlo and Piumi, Francois and Punt, Peter J and Ram, Arthur F.J and Ramón, Ana and Rauscher, Stefan and Record, Eric and Riaño-Pachón, Diego Mauricio and Robert, Vincent and Röhrig, Julian and Ruller, Roberto and Salamov, Asaf and Salih, Nadhira S and Samson, Rob A and Sándor, Erzsébet and Sanguinetti, Manuel and Schütze, Tabea and Sepčić, Kristina and Shelest, Ekaterina and Sherlock, Gavin and Sophianopoulou, Vicky and Squina, Fabio M and Sun, Hui and Susca, Antonia and Todd, Richard B and Tsang, Adrian and Unkles, Shiela E and van de Wiele, Nathalie and van Rossen-Uffink, Diana and de Castro Oliveira, Juliana Velasco and Vesth, Tammi C and Visser, Jaap and Yu, Jae-Hyuk and Zhou, Miaomiao and Andersen, Mikael R and ...
Genome Biology, ISSN 1474-7596, 02/2017, Volume 18, Issue 1, p. 28
Background: The fungal genus Aspergillus is of critical importance to humankind. Species include those with industrial applications, important pathogens of... 
Comparative genomics | Aspergillus | Genome sequencing | Fungal biology | CYTOSINE METHYLTRANSFERASE HOMOLOG | BIOSYNTHETIC-PATHWAY | FUNCTIONAL-CHARACTERIZATION | AMINO-ACID TRANSPORTERS | MULTIPLE SEQUENCE ALIGNMENT | SACCHAROMYCES-CEREVISIAE | FILAMENTOUS FUNGI | AFFINITY NITRATE TRANSPORTER | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | NITRIC-OXIDE | NEUROSPORA-CRASSA | Aspergillus - classification | Multigene Family | Humans | Adaptation, Biological | Cytochrome P-450 Enzyme System - metabolism | Plants - microbiology | Biomass | Phylogeny | Biodiversity | Gene Regulatory Networks | DNA Methylation | Genome, Fungal | Aspergillus - genetics | Genomics - methods | Gene Expression Regulation, Fungal | Carbon - metabolism | Computational Biology - methods | Oxidoreductases - metabolism | Secondary Metabolism - genetics | Signal Transduction | Stress, Physiological - genetics | Molecular Sequence Annotation | Fungal Proteins - genetics | Aspergillus - metabolism | Plants - metabolism | Metabolic Networks and Pathways | Cytochrome P-450 Enzyme System - genetics | Adaptations | Biodegradation | Phenotypes | Genomics | Food contamination | Industrial applications | Genomes | Acid production | Biological diversity | Fungi | Signal transduction | Specialization | Transduction | Stress response | Species | Life Sciences | Human health and pathology | Infectious diseases
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2. Full Text Chronic Psychosocial Stress and Gut Health in Children: Associations with Calprotectin and Fecal Short-Chain Fatty Acids
by Michels, Nathalie and Van De Wiele, Tom and De Henauw, Stefaan
Psychosomatic Medicine, ISSN 0033-3174, 10/2017, Volume 79, Issue 8, pp. 927 - 935
Objectives: Themechanisms underpinning the association between chronic stress and gut health are poorly understood. We aimed to investigate the relationship... 
volatile fatty acids | cortisol | stress | children | calprotectin | feces | PSYCHIATRY | MICROBIOTA | PSYCHOLOGY | PSYCHOLOGY, MULTIDISCIPLINARY | INFLAMMATION | OVERWEIGHT | DISEASE | Leukocyte L1 Antigen Complex - analysis | Humans | Gastrointestinal Microbiome | Hair - chemistry | Hydrocortisone - metabolism | Male | Fatty Acids, Volatile - analysis | Inflammatory Bowel Diseases - metabolism | Feces - chemistry | Adolescent | Heart Rate - physiology | Female | Affective Symptoms - physiopathology | Child | Stress, Psychological - physiopathology
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3. Full Text Clonality and α-a recombination in the Australian Cryptococcus gattii VGII population - an emerging outbreak in Australia
by Carriconde, Fabian and Gilgado, Félix and Arthur, Ian and Ellis, David and Malik, Richard and van de Wiele, Nathalie and Robert, Vincent and Currie, Bart J and Meyer, Wieland
PLoS One, ISSN 1932-6203, 2011, Volume 6, Issue 2, p. e16936
Cryptococcus gattii is a basidiomycetous yeast that causes life-threatening disease in humans and animals. Within C. gattii, four molecular types are... 
NORTHERN AUSTRALIA | NATURAL HABITAT | NEOFORMANS VAR. GATTII | VANCOUVER-ISLAND | BRITISH-COLUMBIA | MULTIDISCIPLINARY SCIENCES | FUNGAL PATHOGENS | ENVIRONMENTAL SOURCES | STATISTICAL TESTS | MITOCHONDRIAL-DNA | MATING-TYPE | Geography | Recombination, Genetic - physiology | Cell Proliferation | Cryptococcosis - microbiology | Gene Frequency | Humans | Australia - epidemiology | Genetic Variation - physiology | Cryptococcus gattii - physiology | Linkage Disequilibrium | Reproduction, Asexual - genetics | Animals | Disease Outbreaks | Genes, Mating Type, Fungal - genetics | Cryptococcosis - epidemiology | Clone Cells | Cryptococcosis - genetics | Cryptococcus gattii - genetics | Recombination | Yeast | Laboratories | Variability | Ribosomal DNA | Sex | Neutrality | Superoxide dismutase | Outbreaks | Infections | Founder effect | Veterinary medicine | Population genetics | Medical schools | Mating | Genotype & phenotype | Conserved sequence | Life cycle engineering | Cryptococcus | Genotypes | Deoxyribonucleic acid--DNA | Pathogens | Data analysis | Integrated software | Population growth | Statistical analysis | Glycerol-3-phosphate dehydrogenase | Population structure | Loci | Hypotheses | DNA fingerprints | Infectious diseases | Software packages | Hospitals | Mating types | Mutation | Life cycles | Deoxyribonucleic acid | DNA
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4. Full Text Gut microbiome patterns depending on children’s psychosocial stress: Reports versus biomarkers
by Michels, Nathalie and Van de Wiele, Tom and Fouhy, Fiona and O'Mahony, Siobhain and Clarke, Gerard and Keane, James
Brain Behavior and Immunity, ISSN 0889-1591, 08/2019, Volume 80, pp. 751 - 762
Chronic stress increases disease vulnerability factors including inflammation, a pathological characteristic potentially regulated by the gut microbiota. We... 
Gut microbiota | Parasympathetic | Happiness | Cortisol | Children | Adolescents | Emotions
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5. Full Text Fungal Stress Database (FSD) - A repository of fungal stress physiological data
by Orosz, Erzsébet and Orosz, Erzsébet and van de Wiele, Nathalie and Emri, Tamás and Zhou, Miaomiao and Zhou, Miaomiao and Robert, Vincent and de Vries, Ronald P and De Vries, Ronald P and Pócsi, István and Pócsi, István
Database, ISSN 1758-0463, 01/2018, Volume 2018, Issue 2018
The construction of the Fungal Stress Database (FSD) was initiated and fueled by two major goals. At first, some outstandingly important groups of filamentous... 
TRANSCRIPTION FACTORS | WATER ACTIVITY | RESPONSES | GENES | MATHEMATICAL & COMPUTATIONAL BIOLOGY | GERMINATION | ASPERGILLUS | Aspergillus niger - classification | Species Specificity | Aspergillus niger - physiology | Oxidative Stress - physiology | Osmotic Pressure - physiology | Databases, Factual
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6. Full Text MycoBank gearing up for new horizons
by Robert, V and Vu, D and Ben Hadj Amor, A and van de Wiele, N and Brouwer, C.P.J.M and de Cock, A.W and Stalpers, J.A and Stalpers, D and Verkley, G.J.M and Groenewald, M and Borges dos Santos, F and Stegehuis, G.J and Crous, P.W and et al., [No Value] and Naturhistoriska riksmuseet and Enheten för botanik
IMA Fungus, ISSN 2210-6340, 2013, Volume 4, Issue 2, pp. 371 - 379
MycoBank, a registration system for fungi established in 2004 to capture all taxonomic novelties, acts as a coordination hub between repositories such as Index... 
Fungi | Repositories | International Nucleotide Sequence Database Collaboration | MycoBank | Nomenclature | Registration | EUBOLD identification services | Typification | MYCOLOGY | Next Generation Sequencing | Forum | Biological Sciences | Biologisk systematik | Naturvetenskap | Biologiska vetenskaper | Diversity of life | Natural Sciences | Biological Systematics | Livets mångfald | Laboratory of Phytopathology | Laboratorium voor Phytopathologie | Laboratorium voor Fytopathologie | EPS-4
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7. Chronic Psychosocial Stress and Gut Health in Children: Associations With Calprotectin and Fecal Short-Chain Fatty Acids
by Nathalie Michels and Tom Van de Wiele and Stefaan De Henauw
Psychosomatic Medicine, ISSN 0033-3174, 10/2017, Volume 79, Issue 8, p. 927
Objectives: The mechanisms underpinning the association between chronic stress and gut health are poorly understood. We aimed to investigate the relationship... 
Socioeconomic status | Variability | Cortisol | Hydrocortisone | Proteins | Body mass index | Social interactions | Morality | Intestine | Negative events | Questionnaires | Bacteria | Feces | Children | Digestive tract | Psychosocial factors | Hair | Composition | Digestive system | Propionic acid | Socio-economic aspects | Inflammation | Fatty acids | Stress | Emotions | Children & youth | Heart rate | Emotional disturbance | Gas chromatography | Sick children | Chronic | Selfreport | Acetic acid | Parasympathetic nervous system
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8. Full Text Clonality and [alpha]-a Recombination in the Australian Cryptococcus gattii VGII Population - An Emerging Outbreak in Australia
by Carriconde, Fabian and Gilgado, Felix and Arthur, Ian and Ellis, David and Malik, Richard and van de Wiele, Nathalie and Robert, Vincent and Currie, Bart J and Meyer, Wieland
PLoS ONE, ISSN 1932-6203, 02/2011, Volume 6, Issue 2, p. e16936
A total of 54 clinical, veterinary and environmental VGII isolates from different parts of the Australian continent were studied. To place the Australian... 
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9. Full Text Gut microbiome patterns depending on children's psychosocial stress: Reports versus biomarkers
by Michels, N and Van de Wiele, T and Fouhy, F and O'Mahony, S and Clarke, G and Keane, J
BRAIN BEHAVIOR AND IMMUNITY, ISSN 0889-1591, 08/2019, Volume 80, pp. 751 - 762
Aim" Chronic stress increases disease vulnerability factors including inflammation, a pathological characteristic potentially regulated by the gut microbiota.... 
Gut microbiota | Parasympathetic | Happiness | PSYCHIATRY | FERMENTED MILK | FECAL MICROBIOTA | PROBIOTICS | Cortisol | IMMUNOLOGY | NEUROSCIENCES | Emotions | COMMUNITY | ADAPTATION | CONSEQUENCES | BODY-MASS INDEX | Children | Adolescents | QUESTIONNAIRE | BRAIN | CONSUMPTION | Psychological aspects | Parenting | Heart beat | Corticosteroids | Exercise | Microbiota (Symbiotic organisms) | Analysis | Disease susceptibility | Biological diversity
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10. Full Text In vitro functional quality characterization of NOTA-Mmodified somatropins
by Bracke, Nathalie and Yao, Han and Wynendaele, Evelien and Verbeke, Frederick and Xu, Xiaolong and Gevaert, Bert and Maes, Alex and Wiele, Christophe Van de and Sathekge, Mike and Saeger, Sarah De and Spiegeleer, Bart De
Analytical Chemistry, ISSN 0003-2700, 03/2017, Volume 89, Issue 5, p. 2764
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11. An example of participatory design methodology in a project which aims at developing individual and organisational learning in communities of practice
by Daele, Amaury and Erpicum, Martin and Esnault, Liliane and Pironet, Fabienne and Platteaux, Hervé and Vandeput, Etienne and Van De Wiele, Nathalie
CEUR Workshop Proceedings, ISSN 1613-0073, 2006, Volume 213, pp. 272 - 277
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12. Full Text Prebiotic effects of wheat Arabinoxylan related to the increase in bifidobacteria, roseburia and bacteroides/prevotella in diet-induced obese mice
by Neyrinck, Audrey M and Possemiers, Sam and Druart, Céline and van de Wiele, Tom and de Backer, Fabienne and Cani, Patrice D and Larondelle, Yvan and Delzenne, Nathalie M
PLoS ONE, ISSN 1932-6203, 2011, Volume 6, Issue 6, p. e20944
Background: Alterations in the composition of gut microbiota - known as dysbiosis - has been proposed to contribute to the development of obesity, thereby... 
BACTERIAL COMMUNITY | INSULIN | IN-VITRO | LIPID-METABOLISM | PLASMA | MECHANISM | LINOLEIC-ACID | GLUCOSE | MULTIDISCIPLINARY SCIENCES | LIVER | GUT MICROBIOTA | Intestines - drug effects | Obesity - diet therapy | Molecular Weight | Xylans - pharmacology | Diet - adverse effects | Cholesterol - blood | Body Weight - drug effects | Male | Linoleic Acids, Conjugated - metabolism | Obesity - microbiology | Metagenome - physiology | Bacterial Load - drug effects | Subcutaneous Fat - metabolism | Prevotella - physiology | Subcutaneous Fat - drug effects | Obesity - etiology | Bifidobacterium - physiology | Biomarkers - metabolism | Dietary Fats - adverse effects | Metagenome - drug effects | Mice, Inbred C57BL | Bacteroides - physiology | Insulin Resistance | Obesity - metabolism | Prebiotics | Gene Expression Regulation - drug effects | Animals | Intestines - microbiology | Xylans - chemistry | Xylans - therapeutic use | Mice | Triticum - chemistry | Microbiota (Symbiotic organisms) | Diet | Analysis | Body weight | Physiological aspects | Insulin resistance | Wheat | Fatty acids | Dysbacteriosis | Adipose tissue | Fat metabolism | Enzyme activity | Lipids | Glucose | Molecular weight | High fat diet | Proteins | Microbiota | Enzymatic activity | Rodents | Nutrients | Bacteria | Oxidation | Colon | Lipid metabolism | Supplementation | Arabinoxylans | Food | Carbohydrates | Obesity | Dietary supplements | Polymerization | Inflammation | Ecology | Metabolism | Fermentation | Gene expression | Insulin | Body weight gain | Cholesterol | Studies | Nutrition research | Correlation analysis | Laboratory animals
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13. Full Text Changes in gut microbiota control inflammation in obese mice through a mechanism involving GLP-2-driven improvement of gut permeability
by Cani, P D and Possemiers, S and Van de Wiele, T and Guiot, Y and Everard, A and Rottier, O and Geurts, L and Naslain, D and Neyrinck, A and Lambert, D M and Muccioli, G G and Delzenne, N M
Gut, ISSN 0017-5749, 08/2009, Volume 58, Issue 8, pp. 1091 - 1103
Background and aims:Obese and diabetic mice display enhanced intestinal permeability and metabolic endotoxaemia that participate in the occurrence of metabolic... 
TOTAL PARENTERAL-NUTRITION | HIGH-FAT-DIET | GLUCAGON-LIKE PEPTIDE-2 | BARRIER FUNCTION | DEPENDENT INSULINOTROPIC POLYPEPTIDE | DIET-INDUCED OBESITY | GASTROENTEROLOGY & HEPATOLOGY | BACTERIAL TRANSLOCATION | GLUCOSE-TOLERANCE | GROWTH-FACTOR-I | INTESTINAL EPITHELIAL PROLIFERATION | Endotoxemia - prevention & control | Glucagon-Like Peptide 2 - agonists | Oxidative Stress - physiology | Intestinal Absorption - drug effects | Glucagon-Like Peptide 2 - physiology | Cecum - microbiology | Glucagon-Like Peptide 2 - antagonists & inhibitors | Phosphoproteins - metabolism | Obesity - microbiology | Occludin | Hepatitis - prevention & control | Membrane Proteins - metabolism | Cecum - physiopathology | Intestinal Absorption - physiology | Tight Junctions - metabolism | Hepatitis - etiology | Inflammation - microbiology | Adiposity - drug effects | Obesity - complications | RNA, Messenger - genetics | Obesity - physiopathology | Endotoxemia - etiology | Permeability | Inflammation - etiology | Bacteria - isolation & purification | Animals | Zonula Occludens-1 Protein | Mice, Obese | Probiotics - therapeutic use | Adiposity - physiology | Inflammation - prevention & control | Mice | Proglucagon - genetics | Oxidative Stress - drug effects | Type 2 diabetes | Obesity | Probiotics | Microbiota (Symbiotic organisms) | Glucagon | Physiological aspects | Models | Research | Health aspects | Cells | Peptides | Laboratories | Cellulose | Insulin-like growth factors | Inflammation | Small intestine | Experiments | Prebiotics | Cell growth | Diet | Rodents | Bacteria | Diabetes | Metabolic disorders | Deoxyribonucleic acid--DNA | Inflammatory bowel disease
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14. Probes for non-invasive matrix metalloproteinase-targeted imaging with PET and SPECT
by Matusiak, Nathalie and van Waarde, Aren and Bischoff, Rainer and Oltenfreiter, Ruth and van de Wiele, Christophe and Dierckx, Rudi A.J.O and Elsinga, Philip H
Current Pharmaceutical Design, ISSN 1381-6128, 2013, Volume 19, Issue 25, pp. 4647 - 4672
Dysregulation of matrix metalloproteinase (MMP) activity can lead to a wide range of disease states such as atherosclerosis, inflammation or cancer. The... 
Molecular imaging | MMP inhibitors | PET | SPECT | MMP peptides | Hydroxamates | ACTIVATION | ATHEROSCLEROTIC PLAQUES | PRELIMINARY BIOLOGICAL EVALUATION | CGS 27023A | molecular imaging | MMP INHIBITOR RADIOTRACERS | RADIOFLUORINATED PYRIMIDINE-2,4,6-TRIONES | TISSUE INHIBITOR | PHARMACOLOGY & PHARMACY | hydroxamates | IN-VIVO EVALUATION | GELATINASE ACTIVITY | MOLECULAR PROBES | Molecular Probes | Animals | Humans | Tomography, Emission-Computed, Single-Photon | Molecular Imaging | Positron-Emission Tomography | Matrix Metalloproteinases - metabolism
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