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1. Full Text Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
by Hillier, L.W and Miller, W and Birney, E and Groenen, M.A.M and Crooijmans, R.P.M.A and Aerts, J and Poel, van der, J.J and International Chicken Genome Sequencing Consortium and Medicinska fakulteten and Medicinska och farmaceutiska vetenskapsområdet and Institutionen för medicinsk biokemi och mikrobiologi and Evolutionsbiologi and Institutionen för evolution, genomik och systematik and Teknisk-naturvetenskapliga vetenskapsområdet and Biologiska sektionen and Uppsala universitet
Nature, ISSN 0028-0836, 2004, Volume 432, Issue 7018, pp. 695 - 716
We present here a draft genome sequence of the red jungle fowl, Gallus gallus. Because the chicken is a modern descendant of the dinosaurs and the first... 
phylogenetic analysis | mammalian evolution | tissue-specific genes | brown-norway rat | non-ltr retrotransposons | major histocompatibility complex | olfactory receptor | mouse genome | recent segmental duplications | alcohol-dehydrogenase | MOUSE GENOME | NON-LTR RETROTRANSPOSONS | ALCOHOL-DEHYDROGENASE | PHYLOGENETIC ANALYSIS | MULTIDISCIPLINARY SCIENCES | BROWN-NORWAY RAT | RECENT SEGMENTAL DUPLICATIONS | MAJOR HISTOCOMPATIBILITY COMPLEX | TISSUE-SPECIFIC GENES | OLFACTORY RECEPTOR | MAMMALIAN EVOLUTION | Gene Duplication | Multigene Family - genetics | Conserved Sequence - genetics | Vertebrates - genetics | Physical Chromosome Mapping | Genomics | Humans | Long Interspersed Nucleotide Elements - genetics | Mutagenesis - genetics | Synteny | Genes - genetics | Short Interspersed Nucleotide Elements - genetics | RNA, Untranslated - genetics | Sequence Analysis, DNA | Pseudogenes - genetics | Animals | Retroviridae - genetics | DNA Transposable Elements - genetics | Chickens - genetics | Genome | Avian Proteins - genetics | Evolution, Molecular | Birds | Evolution | Genetic diversity | Gene expression | Mammals | Chromosomes | Research Support; U.S. Gov't; P.H.S | Research Support; U.S. Gov't; Non-P.H.S | Comparative Study | Long Interspersed Nucleotide Elements/genetics | Biology | Avian Proteins/genetics | Vertebrates/genetics | Short Interspersed Nucleotide Elements/genetics | Pseudogenes/genetics | Genetics | Research Support; Non-U.S. Gov't | Biologi | Natural Sciences | Biological Sciences | RNA; Untranslated/genetics | Mutagenesis/genetics | DNA Transposable Elements/genetics | Multigene Family/genetics | Retroviridae/genetics | Sequence Analysis; DNA | Genetik | Genes/genetics | Naturvetenskap | Conserved Sequence/genetics | Evolution; Molecular | Biologiska vetenskaper | Cell and molecular biology | Chickens/genetics | Cell- och molekylärbiologi
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2. Full Text Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos)
by Kraus, R.H.S and Kersten, H.H.D and Hooft, van, W.F and Crooijmans, R.P.M.A and Poel, van der, J.J and Elmberg, J and Vignal, A and Huang, Y and Li, N and Prins, H.H.T and Groenen, M.A.M and Högskolan Kristianstad and Sektionen för lärande och miljö
BMC Genomics, ISSN 1471-2164, 2011, Volume 12, Issue 1, pp. 150 - 150
Background - Next generation sequencing technologies allow to obtain at low cost the genomic sequence information that currently lacks for most economically... 
divergence | conservation | pathogenic avian influenza | power | markers | birds | virus | map | base | CONSERVATION | VIRUS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | MARKERS | POWER | DIVERGENCE | MAP | PATHOGENIC AVIAN INFLUENZA | BIRDS | BASE | Ducks - genetics | Animals | Gene Frequency | Female | Genotype | Male | Chromosome Mapping | Polymorphism, Single Nucleotide | Genome | Sequence Analysis, DNA | Evolution, Molecular | Expressed Sequence Tags | Genetic aspects | Single nucleotide polymorphisms | Research | Mallard | Population genetics | Avian influenza | Nucleotide sequencing | Comparative analysis | Risk factors | DNA sequencing | Studies | Design | Genomics | Bird migration | Genetics | Genomes | Genetic testing | Manuscripts | Biological Sciences | Naturvetenskap | Biologiska vetenskaper | Natural Sciences
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3. Full Text Genomic Region Containing Toll-Like Receptor Genes Has a Major Impact on Total IgM Antibodies Including KLH-Binding IgM Natural Antibodies in Chickens
by Berghof, T.V.L and Visker, M.H.P.W and Arts, J.A.J and Parmentier, H.K and Poel, van der, J.J and Vereijken, A.L.J and Bovenhuis, H
Frontiers in Immunology, ISSN 1664-3224, 2018, Volume 8, p. 1879
Natural antibodies (NAb) are antigen binding antibodies present in individuals without a previous exposure to this antigen. Keyhole limpet hemocyanin... 
Adaptatiefysiologie | Leerstoelgroep Fokkerij en genetica | Animal Breeding and Genomics | Fokkerij en Genetica | Animal Breeding and Genetics | Adaptation Physiology | Fokkerij en Genomica | WIAS | Leerstoelgroep Adaptatiefysiologie | Natural antibody | B cell maturation | Antibody concentration | B cell survival | Genome-wide association study | Genetic parameter | Heritability | B cell development | KEYHOLE LIMPET HEMOCYANIN | genetic parameter | AFFECTING PHENOTYPIC TRAITS | DISEASE VIRUS-INFECTION | IMMUNOLOGY | F-2 INTERCROSS | heritability | NEW-HAMPSHIRE | QUANTITATIVE TRAIT LOCI | BODY-WEIGHT | genome-wide association study | WIDE LINKAGE ANALYSIS | EGG-PRODUCTION | natural antibody | antibody concentration | ASSOCIATION | Viral antibodies | Genetic research | Antibodies | B cells | Genes | Genomics
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4. Full Text A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms
by Wong, Gane Ka-Shu and Liu, Bin and Wang, Jun and Zhang, Yong and Yang, Xu and Zhang, Zengjin and Meng, Qingshun and Zhou, Jun and Li, Dawei and Zhang, Jingjing and Ni, Peixiang and Li, Songgang and Ran, Longhua and Li, Heng and Zhang, Jianguo and Li, Ruiqiang and Li, Shengting and Zheng, Hongkun and Lin, Wei and Li, Guangyuan and Wang, Xiaoling and Zhao, Wenming and Li, Jun and Ye, Chen and Dai, Mingtao and Ruan, Jue and Zhou, Yan and Li, Yuanzhe and He, Ximiao and Zhang, Yunze and Wang, Jing and Huang, Xiangang and Tong, Wei and Chen, Jie and Ye, Jia and Chen, Chen and Wei, Ning and Li, Guoqing and Dong, Le and Lan, Fengdi and Sun, Yongqiao and Zhang, Zhenpeng and Yang, Zheng and Yu, Yingpu and Huang, Yanqing and He, Dandan and Xi, Yan and Wei, Dong and Qi, Qiuhui and Li, Wenjie and Shi, Jianping and Wang, Miaoheng and Xie, Fei and Wang, Jianjun and Zhang, Xiaowei and Wang, Pei and Zhao, Yiqiang and Li, Ning and Yang, Ning and Dong, Wei and Hu, Songnian and Zeng, Changqing and Zheng, Weimou and Hao, Bailin and Hillier, LaDeana W and Yang, Shiaw-Pyng and Warren, Wesley C and Wilson, Richard K and Brandström, Mikael and Ellegren, Hans and Crooijmans, Richard P. M. A and van der Poel, Jan J and Bovenhuis, Henk and Groenen, Martien A. M and Ovcharenko, Ivan and Gordon, Laurie and Stubbs, Lisa and Lucas, Susan and Glavina, Tijana and Aerts, Andrea and Kaiser, Pete and Rothwell, Lisa and Young, John R and Rogers, Sally and Walker, Brian A and van Hateren, Andy and Kaufman, Jim and Bumstead, Nat and Lamont, Susan J and Zhou, Huaijun and Hocking, Paul M and Morrice, David and de Koning, Dirk-Jan and Law, Andy and Bartley, Neil and Burt, David W and Hunt, Henry and Cheng, Hans H and Gunnarsson, Ulrika and Wahlberg, Per and ... and Int Chicken Polymorphism Map Conso and International Chicken Polymorphism Map Consortium and Joint Genome Institute (JGI) and Medicinska fakulteten and Evolutionsbiologi and Medicinska och farmaceutiska vetenskapsområdet and Institutionen för medicinsk biokemi och mikrobiologi and Institutionen för evolution, genomik och systematik and Teknisk-naturvetenskapliga vetenskapsområdet and Biologiska sektionen and Uppsala universitet
Nature, ISSN 0028-0836, 12/2004, Volume 432, Issue 7018, pp. 717 - 722
We describe a genetic variation map for the chicken genome containing 2.8 million single-nucleotide polymorphisms ( SNPs). This map is based on a comparison of... 
QUANTITATIVE TRAIT LOCI | SNP | MULTIDISCIPLINARY SCIENCES | SEQUENCE | MUTATION | GROWTH | MARKERS | DIVERSITY | Amino Acid Sequence | Physical Chromosome Mapping | Genomics | Humans | Selection, Genetic | Chickens - classification | Molecular Sequence Data | Animals, Domestic - classification | Haplotypes - genetics | Animals | Ornithine Carbamoyltransferase - chemistry | Animals, Domestic - genetics | Chromosomes - genetics | Alleles | Polymorphism, Single Nucleotide - genetics | Chickens - genetics | Female | Genome | Birds | Genetic diversity | Gene expression | chicken | polymorphism | selection | domestication | Research Support; U.S. Gov't; Non-P.H.S | Comparative Study | Biology | Haplotypes/genetics | Genetics | Research Support; Non-U.S. Gov't | Biologi | Natural Sciences | Chromosomes/genetics | Biological Sciences | Ornithine Carbamoyltransferase/chemistry | Polymorphism; Single Nucleotide/genetics | Chickens/classification/genetics | Genetik | Animals; Domestic/classification/genetics | Naturvetenskap | Selection (Genetics) | Biologiska vetenskaper | Cell and molecular biology | Cell- och molekylärbiologi
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5. Full Text Cold stress equally enhances in vivo pro-inflammatory cytokine gene expression in chicken lines divergently selected for antibody responses
by Hangalapura, Basavarajappa N and Kaiser, Michael G and Poel, Jan J. van der and Parmentier, Henk K and Lamont, Susan J
Developmental and Comparative Immunology, ISSN 0145-305X, 2006, Volume 30, Issue 5, pp. 503 - 511
The effects of cold stress, immunization and genetic selection on the expression of mRNA for cytokine genes in poultry have not been completely elucidated.... 
cytokine | complete Freund's adjuvant | peripheral blood leukocytes | Cold stress | chicken lines | real-time quantitative reverse transcriptase-polymerase chain reaction | mRNA | red-blood-cells | system | exposure | modulation | adaptation | exercise | lymphocyte-proliferation | immune-responses | natural antibodies | responsiveness | Chicken lines | Peripheral blood leukocytes | Cytokine | Real-time quantitative reverse transcriptase-polymerase chain reaction | Complete Freund's adjuvant | SYSTEM | RESPONSIVENESS | NATURAL ANTIBODIES | cold stress | IMMUNOLOGY | EXERCISE | LYMPHOCYTE-PROLIFERATION | FISHERIES | ZOOLOGY | IMMUNE-RESPONSES | ADAPTATION | RED-BLOOD-CELLS | EXPOSURE | MODULATION | Cold Temperature | Vaccination | Gene Expression Regulation | Selection, Genetic | Immunity, Innate | Reverse Transcriptase Polymerase Chain Reaction | Chickens - immunology | Freund's Adjuvant - immunology | Chickens - metabolism | RNA, Messenger - biosynthesis | Animals | Antibody Formation | Cytokines - genetics | Immunity, Cellular | Cytokines - biosynthesis
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6. Full Text Detection of Quantitative Trait Loci for Backfat Thickness and Intramuscular Fat Content in Pigs (Sus scrofa)
by de Koning, Dirk J and Janss, Luc L. G and Rattink, Annemieke P and van Oers, Pieter A. M and de Vries, Beja J and Groenen, Martien A. M and van der Poel, Jan J and de Groot, Piet N and Brascamp, E. W and van Arendonk, Johan A. M
Genetics, ISSN 0016-6731, 08/1999, Volume 152, Issue 4, pp. 1679 - 1690
In an experimental cross between Meishan and Dutch Large White and Landrace lines, 619 F-2 animals and their parents were typed for molecular markers covering... 
MEAT QUALITY TRAITS | GROWTH | GENES | GENETICS & HEREDITY | WILD BOAR | POPULATIONS | MEISHAN | CARCASS | MAP | GENOME | LARGE WHITE-PIGS | Swine - anatomy & histology | Quantitative Trait, Heritable | Genotype | Male | Chromosome Mapping | Swine - genetics | Animals | Body Composition - genetics | Alleles | Female | Models, Genetic | Microsatellite Repeats | Adipose Tissue - anatomy & histology | Crosses, Genetic | Muscle, Skeletal - anatomy & histology | Obesity | Genetic aspects | Research | Swine | Mutation breeding
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7. Full Text An adaptive Network-Oriented cognitive model for Major Depression and its treatment
by van der Poel, Marcia A and Treur, Jan
Biologically Inspired Cognitive Architectures, ISSN 2212-683X, 10/2018, Volume 26, pp. 159 - 165
This paper presents an adaptive neurologically inspired cognitive model for Major Depressive Disorder. It is based on an (adaptive) temporal-causal network... 
Cognitive Neuroscience | Experimental and Cognitive Psychology | Artificial Intelligence | ANIMAL-MODELS | DEEP BRAIN-STIMULATION | NEUROSCIENCES | COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE
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8. Full Text Two-dimensional screening of the Wageningen chicken BAC library
by Crooijmans, Richard P.M.A and Vrebalov, Julia and Dijkhof, Rosilde J.M and van der Poel, Jan J and Groenen, Martien A.M
Mammalian Genome, ISSN 0938-8990, 05/2000, Volume 11, Issue 5, pp. 360 - 363
We have constructed a Bacterial Artificial Chromosome (BAC) library that provides 5.5-fold redundant coverage of the chicken genome. The library was made by... 
ARTIFICIAL CHROMOSOME LIBRARY | DNA FRAGMENTS | BIOCHEMISTRY & MOLECULAR BIOLOGY | MARKERS | GENOME | VECTOR | RECOVERY | CLONING | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | CONSTRUCTION | GENETICS & HEREDITY | YAC LIBRARY | CLONES | DNA - genetics | Animals | Chickens - genetics | Female | In Situ Hybridization, Fluorescence | Genetic Markers | Chromosomes, Bacterial | Microsatellite Repeats | Polymerase Chain Reaction - methods
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9. Full Text Early in vivo cytokine genes expression in chickens after challenge with Salmonella typhimurium lipopolysaccharide and modulation by dietary n−3 polyunsaturated fatty acids
by Sijben, John W.C and Klasing, Kirk C and Schrama, Johan W and Parmentier, Henk K and van der Poel, Jan J and Savelkoul, Huub F.J and Kaiser, Pete
Developmental and Comparative Immunology, ISSN 0145-305X, 2003, Volume 27, Issue 6, pp. 611 - 619
We studied the effects of Salmonella typhimurium lipopolysaccharide (LPS) on in vivo cytokine mRNA levels in chickens, and investigated whether these levels... 
Cytokines | Polyunsaturated fatty acids | Real-time reverse transcription-polymerase chain reaction | Lipopolysaccharide | Inflammatory response | Chicken | mRNA | Fish oil | growing layer hens | ifn-gamma | functional-characterization | t-cells | il-15 | growth | turkey interferon | interferon-gamma | blood | fish-oil | chicken | IFN-GAMMA | real-time reverse transcription-polymerase chain reaction | polyunsaturated fatty acids | fish oil | inflammatory response | IL-15 | FUNCTIONAL-CHARACTERIZATION | IMMUNOLOGY | GROWING LAYER HENS | TURKEY INTERFERON | ZOOLOGY | INTERFERON-GAMMA | GROWTH | cytokines | FISH-OIL | lipopolysaccharide | T-CELLS | BLOOD | Chickens - metabolism | Animals | Salmonella typhimurium - immunology | Gene Expression Regulation - immunology | Fatty Acids, Unsaturated - metabolism | RNA, Messenger - metabolism | Reverse Transcriptase Polymerase Chain Reaction | Chickens - immunology | Cytokines - genetics | Lipopolysaccharides - immunology | Cytokines - biosynthesis
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