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Bioinformatics, ISSN 1367-4803, 09/2018, Volume 34, Issue 18, pp. 3137 - 3144
Abstract Motivation Counting molecules using next-generation sequencing (NGS) suffers from PCR amplification bias, which reduces the accuracy of many... 
POLYMERASE-CHAIN-REACTION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Original Papers
Journal Article
Molecular biology and evolution, ISSN 0737-4038, 06/2019, Volume 36, Issue 6, pp. 1294 - 1301
Molecular phylogenetics has neglected polymorphisms within present and ancestral populations for a long time. Recently, multispecies coalescent based methods... 
species tree | phylogenetics | polymorphism-aware phylogenetic model | incomplete lineage sorting | boundary mutation model | DNA-SEQUENCES | BIOCHEMISTRY & MOLECULAR BIOLOGY | ALGORITHMS | SIMULATION | DRIFT | GENE TREES | EVOLUTIONARY BIOLOGY | EVOLUTION | PHYLOGENETIC MODELS | GENETICS & HEREDITY | SELECTION | Methods
Journal Article
Genome Biology and Evolution, ISSN 1759-6653, 2019, Volume 11, Issue 2, pp. 531 - 545
Orthologs document the evolution of genes and metabolic capacities encoded in extant and ancient genomes. However, the similarity between orthologs decays with... 
Phylogenetic profile | Sequence evolution | Metabolic pathway | Ortholog search | LUCA | Twilight zone | twilight zone | ortholog search | ORTHOLOGS | PHYLOGENETIC ANALYSIS | phylogenetic profile | INVERSE RELATIONSHIP | sequence evolution | metabolic pathway | EVOLUTIONARY BIOLOGY | ORIGIN | GENOME SEQUENCE | HUMAN-DISEASE GENES | DATABASE | GENETICS & HEREDITY | WEB SERVER | RAPID EVOLUTION | REVEALS
Journal Article
Nucleic acids research, ISSN 0305-1048, 07/2016, Volume 44, Issue 1, pp. W232 - W235
Journal Article
Systematic Biology, ISSN 1063-5157, 11/2016, Volume 65, Issue 6, pp. 997 - 1008
Journal Article
Systematic Biology, ISSN 1063-5157, 05/2018, Volume 67, Issue 3, pp. 552 - 558
Abstract The invariable site plus $\Gamma$ model (I$+\Gamma)$ is widely used to model rate heterogeneity among alignment sites in maximum likelihood and... 
Gamma model | Invariable sites | Rate heterogeneity among sites | Phylogenetic inference | Maximum likelihood | Points of View | phylogenetic inference | rate heterogeneity among sites | invariable sites | maximum likelihood
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 01/2015, Volume 32, Issue 1, pp. 268 - 274
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 02/2018, Volume 35, Issue 2, pp. 518 - 522
The standard bootstrap (SBS), despite being computationally intensive, is widely used in maximum likelihood phylogenetic analyses. We recently proposed the... 
polytomies | model violation | phylogenetic inference | ultrafast bootstrap | maximum likelihood | MAXIMUM-LIKELIHOOD PHYLOGENIES | SUBSTITUTION | PROTEIN | BIOCHEMISTRY & MOLECULAR BIOLOGY | ALGORITHM | TIME | EVOLUTIONARY BIOLOGY | TREE-SPACE | EVOLUTION | MODELS | GENES | GENETICS & HEREDITY | CONFIDENCE | Resources
Journal Article
G3: Genes, Genomes, Genetics, ISSN 2160-1836, 05/2018, Volume 8, Issue 5, pp. 1475 - 1480
Risk of melanoma is in part determined by genetic factors. Currently the only established high penetrance familial melanoma genes are CDKN2A and CDK4. Recent... 
POT1 melanoma | Austria | Familial genetics | familial | genetics | GENETICS & HEREDITY | FRAMEWORK | POT1 | melanoma | MUTATIONS | PREDISPOSE | Telomere-Binding Proteins - genetics | Genetic Predisposition to Disease | Cyclin-Dependent Kinase Inhibitor p18 - genetics | Melanoma - genetics | Humans | Middle Aged | Risk Factors | Female | Male | Aged | Germ-Line Mutation - genetics
Journal Article
Genetics, ISSN 0016-6731, 05/2014, Volume 197, Issue 1, pp. 285 - 285
Genome-wide association studies (GWAS) are designed to identify the portion of single-nucleotide polymorphisms (SNPs) in genome sequences associated with a... 
Journal Article
Molecular Ecology, ISSN 0962-1083, 05/2011, Volume 20, Issue 9, pp. 1952 - 1963
Genealogies estimated from haplotypic genetic data play a prominent role in various biological disciplines in general and in phylogenetics, population genetics... 
neighbour‐joining | networks | maximum likelihood |