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New Phytologist, ISSN 0028-646X, 7/2013, Volume 199, Issue 1, pp. 288 - 299
.... Taking advantage of the collective experience of six research groups, we here review the different stages involved in fungal community analysis, from field sampling via laboratory procedures to bio... 
Polymerase chain reaction | Fungi | Metagenomics | Synecology | DNA | Product category rules | Phylogenetics | Sequencing | Bioinformatics | Methods | Forest soils | 454‐pyrosequencing | barcoding | internal transcribed spacer (ITS) region | environmental sequencing | PCR | bioinformatics | 454-pyrosequencing | Environmental sequencing | Barcoding | Internal transcribed spacer (ITS) region | AMPLICON READS | ARBUSCULAR MYCORRHIZAL FUNGI | RIBOSOMAL-RNA | RARE BIOSPHERE | PLANT SCIENCES | 454 PYROSEQUENCING ANALYSES | MICROBIAL COMMUNITIES | ENCODING GENES | ECTOMYCORRHIZAL FUNGI | DNA BARCODE | DIVERSITY | DNA, Intergenic | Computational Biology - methods | DNA, Fungal - analysis | Mycorrhizae - genetics | Fungi - classification | Soil Microbiology | Biota | Genetic Markers | DNA Primers | High-Throughput Nucleotide Sequencing - methods | Fungi - genetics | Polymerase Chain Reaction - methods | Research | Botanik | Microbiology | Mikrobiologi | Ecology | Bioinformatik och systembiologi | Mikrobiologi inom det medicinska området | Bioinformatics and Systems Biology | Biological Systematics | Biologisk systematik | Soil Science | Microbiology in the medical area | Botany | 454-pyrosequencing; bioinformatics; barcoding; environmental sequencing; internal transcribed spacer (ITS) region; PCR | Markvetenskap | Ekologi
Journal Article
ISME Journal, ISSN 1751-7362, 12/2017, Volume 11, Issue 12, pp. 2639 - 2643
...OPEN PERSPECTIVE Exact sequence variants should replace operational taxonomic units in marker-gene data analysis Benjamin J Callahan1, Paul J McMurdie2... 
AMPLICON | IMPROVES | ECOLOGY | MICROBIOLOGY | MICROBIOTA | Genetic Variation | Bacteria - isolation & purification | Bacteria - classification | Classification - methods | Bacteria - genetics | Databases, Nucleic Acid | Sequence Analysis, DNA | Data analysis | Databases | Control methods | Taxonomy | Reproducibility | Computer applications | Data processing | Gene sequencing
Journal Article
Human Mutation, ISSN 1059-7794, 06/2009, Volume 30, Issue 6, pp. 857 - 859
Recent advances in fluorescent dyes, methods, instruments and software for DNA melting analysis have created versatile new tools for variant scanning and genotyping... 
HRM | snapback primer | variant detection | Heterozygote scanning | HRMA | Snapback primer | Variant detection | VARIANTS | GENE | SMALL AMPLICONS | GENETICS & HEREDITY | Homozygote | Nucleic Acid Denaturation | Heterozygote | DNA Mutational Analysis | Biochemistry - methods | Humans
Journal Article
Journal Article
Biology and Fertility of Soils, ISSN 0178-2762, 07/2017, Volume 53, Issue 5, pp. 485 - 489
Journal Article
FRONTIERS IN PLANT SCIENCE, ISSN 1664-462X, 05/2019, Volume 10, p. 599
Amplicon sequencing (AmpSeq) is a practical, intuitive strategy with a semi-automated computational pipeline for analysis of highly multiplexed PCR-derived sequences... 
heterozygosity | READ ALIGNMENT | haplotype resolution | molecular marker development | SNP markers | amplicon read counts | targeted amplicon sequencing | PLANT SCIENCES | Genotype | Analysis | Plant genetics | RNA sequencing | Genetic research | Botanical research | Research
Journal Article
Journal Article
BMC Microbiology, ISSN 1471-2180, 09/2017, Volume 17, Issue 1, pp. 194 - 16
.... As rapid improvements in sequencing platforms and new data analysis pipelines are introduced, it is essential to evaluate their capabilities in specific applications... 
Bioinformatics pipeline | NGS bias | 16S rRNA amplicon sequencing - microbiome analysis - microbiome - microbiome composition - next generation sequencing platforms | BACTERIA | OLIGOSACCHARIDES | BIAS | next generation sequencing platforms | PROBIOTICS | MICROBIOLOGY | ILLUMINA | microbiome analysis | microbiome | IMPACT | microbiome composition | TECHNOLOGIES | 16S rRNA amplicon sequencing | Multivariate Analysis | Computational Biology - methods | Reproducibility of Results | DNA, Bacterial - isolation & purification | Gene Library | Computational Biology - instrumentation | Chickens - microbiology | Statistics as Topic | Cecum - microbiology | Phylogeny | Biodiversity | Gastrointestinal Microbiome - genetics | Bacteria - genetics | Animals | DNA, Bacterial - genetics | Analysis of Variance | Base Sequence | Bacteria - classification | RNA, Ribosomal, 16S - genetics | DNA, Bacterial - analysis | Microbial Consortia - genetics | High-Throughput Nucleotide Sequencing - instrumentation | High-Throughput Nucleotide Sequencing - methods | RNA sequencing | Genetic aspects | Comparative analysis | Microbial colonies | Performance evaluation | rRNA 16S | Laboratories | Pipelines | Picking | Genomics | Bias | Genomes | Species diversity | Taxa | Biological effects | Microorganisms | Bioinformatics | Deoxyribonucleic acid--DNA | Platforms | Data analysis | Filtration | Cecum | Data processing | Abundance | Prebiotics | Studies | Reproducibility | Relative abundance | Quality control | Genetic testing | Methods
Journal Article
Journal of Microbiological Methods, ISSN 0167-7012, 12/2014, Volume 107, pp. 30 - 37
Journal Article