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Bioinformatics, ISSN 1367-4803, 12/2014, Volume 31, Issue 21, pp. 3476 - 3482
Motivation: Next-generation sequencing produces vast amounts of data with errors that are difficult to distinguish from true biological variation when coverage... 
AMPLICON READS | ILLUMINA | DIVERSITY | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | High-Throughput Nucleotide Sequencing - methods | Software | Algorithms | Filtration | Filtering | Mathematical analysis | Packages | Error correction | Sequencing | Bioinformatics | Assembly
Journal Article
F1000Research, ISSN 2046-1402, 2017, Volume 6, p. 631
Following a nanopore sequencing run of PCR products of three amplicons less than 1kb, an abundance of reads failed quality control due to template/complement... 
Bioinformatics | Signal | Amplicon | MinION | Interferon | Chimerism | Nanopore | R9.4
Journal Article
FEMS MICROBIOLOGY ECOLOGY, ISSN 0168-6496, 04/2019, Volume 95, Issue 4
The severity of environmental conditions at Earth's frigid zones present attractive opportunities for microbial biomining due to their heightened potential as... 
NONRIBOSOMAL PEPTIDE | COMMUNITY STRUCTURE | NATURAL-PRODUCTS | BIOSYNTHESIS | SURFACTANTS | MICROBIOLOGY | amplicon sequencing | polar soil | polyketides | microbial biodiversity | non-ribosomal peptides | DISCOVERY
Journal Article
PLoS ONE, ISSN 1932-6203, 02/2013, Volume 8, Issue 2
In microbial ecology, a fundamental question relates to how community diversity and composition change in response to perturbation. Most studies have had... 
Phylogenetic analysis | Sediment | Sequence databases | BASIC BIOLOGICAL SCIENCES | Ribosomal RNA | Taxonomy | Sequence assembly tools | Sulfates | Sequence analysis
Journal Article
Journal Article
Trends in Ecology & Evolution, ISSN 0169-5347, 04/2012, Volume 27, Issue 4, pp. 233 - 243
Journal Article
New Phytologist, ISSN 0028-646X, 7/2013, Volume 199, Issue 1, pp. 288 - 299
Novel high-throughput sequencing methods outperform earlier approaches in terms of resolution and magnitude. They enable identification and relative... 
Polymerase chain reaction | Fungi | Metagenomics | Synecology | DNA | Product category rules | Phylogenetics | Sequencing | Bioinformatics | Methods | Forest soils | environmental sequencing | bioinformatics | internal transcribed spacer | 454‐pyrosequencing | barcoding | ITS | region | PCR | 454-pyrosequencing | Environmental sequencing | Barcoding | Internal transcribed spacer (ITS) region | AMPLICON READS | ARBUSCULAR MYCORRHIZAL FUNGI | RIBOSOMAL-RNA | RARE BIOSPHERE | PLANT SCIENCES | internal transcribed spacer (ITS) region | 454 PYROSEQUENCING ANALYSES | MICROBIAL COMMUNITIES | ENCODING GENES | ECTOMYCORRHIZAL FUNGI | DNA BARCODE | DIVERSITY | DNA, Intergenic | Computational Biology - methods | DNA, Fungal - analysis | Mycorrhizae - genetics | Fungi - classification | Soil Microbiology | Biota | Genetic Markers | DNA Primers | High-Throughput Nucleotide Sequencing - methods | Fungi - genetics | Polymerase Chain Reaction - methods | Research | Botanik | Microbiology | Mikrobiologi | Ecology | Bioinformatik och systembiologi | Mikrobiologi inom det medicinska området | Bioinformatics and Systems Biology | Biological Systematics | Biologisk systematik | Soil Science | Microbiology in the medical area | Botany | 454-pyrosequencing; bioinformatics; barcoding; environmental sequencing; internal transcribed spacer (ITS) region; PCR | Markvetenskap | Ekologi
Journal Article
FRONTIERS IN PLANT SCIENCE, ISSN 1664-462X, 05/2019, Volume 10, p. 599
Amplicon sequencing (AmpSeq) is a practical, intuitive strategy with a semi-automated computational pipeline for analysis of highly multiplexed PCR-derived... 
heterozygosity | READ ALIGNMENT | haplotype resolution | molecular marker development | SNP markers | amplicon read counts | targeted amplicon sequencing | PLANT SCIENCES | Genotype | Analysis | Plant genetics
Journal Article