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1. Full Text Identification of glucose-6-phosphate transporter as a key regulator functioning at the autophagy initiation step
by Ahn, Hye-Hyun and Oh, Yumin and Lee, Huikyong and Lee, WonJae and Chang, Jae-Woong and Pyo, Ha-Kyung and Nah, Do hyung and Jung, Yong-Keun
FEBS Letters, ISSN 0014-5793, 07/2015, Volume 589, Issue 16, pp. 2100 - 2109
•ULK1 interacts with ATG9 in mammalian cells.•ULK1-VN/ATG9-VC BiFC assay isolated a new autophagy modulator.•G6PT regulates autophagic flux independent of its... 
Screening | G6PT | ULK1 | ATG9 | Autophagy modulator | glucose-6-phosphate transporter | N-terminus of Venus vector | chlorogenic acid | BiFC | bimolecular fluorescence complementation | CHA | C-terminus of Venus vector | NEURODEGENERATIVE DISEASE | DISEASE TYPE-IB | BIOCHEMISTRY & MOLECULAR BIOLOGY | CELL-GROWTH | MACROAUTOPHAGY | MTOR | CELL BIOLOGY | MAMMALIAN ATG PROTEINS | FORMATION SITE | BIOPHYSICS | SIGNALING PATHWAY | AMINO-ACIDS | ANTIPORTER DEFICIENT | Up-Regulation | TOR Serine-Threonine Kinases - metabolism | Vesicular Transport Proteins - metabolism | Humans | Intracellular Signaling Peptides and Proteins - metabolism | Multiprotein Complexes - metabolism | RNA Interference | Intracellular Signaling Peptides and Proteins - genetics | Monosaccharide Transport Proteins - metabolism | Peptide Fragments - genetics | Protein-Serine-Threonine Kinases - metabolism | Monosaccharide Transport Proteins - genetics | Membrane Proteins - genetics | Phagosomes - metabolism | Recombinant Proteins - chemistry | Antiporters - metabolism | Recombinant Fusion Proteins - chemistry | Huntingtin Protein | Peptide Fragments - chemistry | Models, Biological | Protein-Serine-Threonine Kinases - chemistry | Antiporters - antagonists & inhibitors | Hepatocytes - enzymology | Autophagy-Related Proteins | Phagosomes - enzymology | Cricetulus | Hepatocytes - metabolism | Autophagy | Recombinant Fusion Proteins - metabolism | Autophagy-Related Protein-1 Homolog | Mechanistic Target of Rapamycin Complex 1 | Multiprotein Complexes - antagonists & inhibitors | TOR Serine-Threonine Kinases - antagonists & inhibitors | Hepatocytes - cytology | Nerve Tissue Proteins - chemistry | Antiporters - genetics | Membrane Proteins - metabolism | Protein Interaction Domains and Motifs | Monosaccharide Transport Proteins - antagonists & inhibitors | Recombinant Proteins - metabolism | Cell Line | Peptide Fragments - metabolism | Vesicular Transport Proteins - genetics | Protein-Serine-Threonine Kinases - genetics | Mutant Proteins - metabolism | Vesicular Transport Proteins - chemistry | Recombinant Proteins - genetics | Nerve Tissue Proteins - genetics | Protein Transport | Nerve Tissue Proteins - metabolism | Animals | Membrane Proteins - chemistry | Intracellular Signaling Peptides and Proteins - chemistry | Mutant Proteins - chemistry | Amino Acid Substitution | Phosphates | Enzymes | Glucose | Analysis | Dextrose
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2. Full Text Interplay between ROS and autophagy in cancer cells, from tumor initiation to cancer therapy
by Poillet-Perez, Laura and Despouy, Gilles and Delage-Mourroux, Régis and Boyer-Guittaut, Michaël
Redox Biology, ISSN 2213-2317, 04/2015, Volume 4, Issue C, pp. 184 - 192
Cancer formation is a complex and highly regulated multi-step process which is highly dependent of its environment, from the tissue to the patient. This... 
Mitochondria | Antioxidant | Mitophagy | Autophagy | ROS | Cancer | KAPPA-B ACTIVATION | OXIDATIVE STRESS | ACTIVATED PROTEIN-KINASE | METASTASIS | BIOCHEMISTRY & MOLECULAR BIOLOGY | MITOCHONDRIAL AUTOPHAGY | HYPOXIA | FIBROBLASTS | METABOLISM | STROMA COEVOLUTION | GROWTH | Neoplasms - metabolism | AMP-Activated Protein Kinases - metabolism | Autophagy-Related Proteins | Reactive Oxygen Species - metabolism | Humans | Gene Expression Regulation, Neoplastic | Tumor Microenvironment | Antineoplastic Agents - therapeutic use | Intracellular Signaling Peptides and Proteins - metabolism | Autophagy-Related Protein-1 Homolog | Mitochondrial Degradation - genetics | Cysteine Endopeptidases - metabolism | Neoplasms - genetics | Cell Transformation, Neoplastic - genetics | Apoptosis Regulatory Proteins - genetics | Membrane Proteins - metabolism | Autophagy - genetics | Intracellular Signaling Peptides and Proteins - genetics | Kelch-Like ECH-Associated Protein 1 | Protein-Serine-Threonine Kinases - metabolism | Beclin-1 | Signal Transduction | Membrane Proteins - genetics | Protein-Serine-Threonine Kinases - genetics | Lymphatic Metastasis | Mitochondria - metabolism | Mitochondria - pathology | Cell Transformation, Neoplastic - metabolism | Apoptosis Regulatory Proteins - metabolism | Neoplasms - drug therapy | Cysteine Endopeptidases - genetics | Cell Transformation, Neoplastic - pathology | Neoplasms - pathology | AMP-Activated Protein Kinases - genetics
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3. Full Text WIPI2 Links LC3 Conjugation with PI3P, Autophagosome Formation, and Pathogen Clearance by Recruiting Atg12–5-16L1
by Dooley, Hannah C and Razi, Minoo and Polson, Hannah E.J and Girardin, Stephen E and Wilson, Michael I and Tooze, Sharon A
Molecular Cell, ISSN 1097-2765, 07/2014, Volume 55, Issue 2, pp. 238 - 252
Mammalian cell homeostasis during starvation depends on initiation of autophagy by endoplasmic reticulum-localized phosphatidylinositol 3-phosphate... 
MAMMALIAN ATG PROTEINS | FORMATION SITE | PHOSPHATIDYLINOSITOL 3-PHOSPHATE | ISOLATION MEMBRANE | BETA-PROPELLER | SALMONELLA-CONTAINING VACUOLE | BIOCHEMISTRY & MOLECULAR BIOLOGY | TARGETING PATHWAY | ENDOPLASMIC-RETICULUM | ULK1 COMPLEX | BINDING-SITES | CELL BIOLOGY | Phagosomes - microbiology | Autophagy-Related Proteins | Phosphatidylinositol Phosphates - metabolism | Microtubule-Associated Proteins - metabolism | Humans | Molecular Sequence Data | Autophagy | Membrane Proteins - physiology | HEK293 Cells | Conserved Sequence | Carrier Proteins - chemistry | Protein Interaction Domains and Motifs | Autophagy-Related Protein 12 | Carrier Proteins - physiology | Amino Acid Sequence | Salmonella typhimurium - physiology | Small Ubiquitin-Related Modifier Proteins - metabolism | Phagosomes - metabolism | Protein Isoforms - physiology | Protein Transport | Host-Pathogen Interactions | Animals | Carrier Proteins - metabolism | Autophagy-Related Protein 5 | Protein Binding | Mice | Protein Processing, Post-Translational | Intracellular Membranes - metabolism | Phagocytosis | Proteins | Phosphates | Starvation | Cells
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4. Full Text Autophagy, mitochondria and oxidative stress: Cross-talk and redox signalling
by Lee, Jisun and Giordano, Samantha and Zhang, Jianhua
Biochemical Journal, ISSN 0264-6021, 01/2012, Volume 441, Issue 2, pp. 523 - 540
Reactive oxygen and nitrogen species change cellular responses through diverse mechanisms that are now being defined. At low levels, they are signalling... 
Mitochondrion | Oxidative stress | Redox signalling | Neurodegeneration | Autophagy | Nitrative stress | autophagy | CHAPERONE-MEDIATED AUTOPHAGY | ANTIOXIDANT RESPONSIVE ELEMENTS | BIOCHEMISTRY & MOLECULAR BIOLOGY | LIPOFUSCINOSES BATTEN-DISEASE | neurodegeneration | AMYOTROPHIC-LATERAL-SCLEROSIS | mitochondrion | redox signalling | MOTOR-NEURON DEGENERATION | MANGANESE SUPEROXIDE-DISMUTASE | nitrative stress | SMOOTH-MUSCLE-CELLS | PATHOGENIC DJ-1 MUTATIONS | HYPOXIA-INDUCED AUTOPHAGY | oxidative stress | COMPLEX-I DEFICIENCY | Protein Kinases - metabolism | Transcription, Genetic - drug effects | Cardiovascular Diseases - physiopathology | Reactive Oxygen Species - metabolism | Oxidation-Reduction | Reactive Nitrogen Species - metabolism | Humans | Oxidative Stress - physiology | Hydrogen Peroxide - pharmacology | Oncogene Proteins - metabolism | Nitric Oxide - physiology | Autophagy - physiology | Intracellular Signaling Peptides and Proteins - metabolism | Mitochondria - metabolism | Mitochondria - pathology | Parkinson Disease - physiopathology | Lysosomes - physiology | Protein Deglycase DJ-1 | Animals | Signal Transduction - physiology | TOR Serine-Threonine Kinases - physiology | Neoplasms - physiopathology | AMPK, 5′-AMP-activated protein kinase | NBR1, neighbour of BRCA1 (breast cancer early-onset 1) | NGF, nerve growth factor | LC3, light chain 3 | NOX, NADPH oxidase | EM, electron microscopy | TOR, target of rapamycin | ULK, unc (unco-ordinated family member)-51-like kinase | mtDNA, mitochondrial DNA | mTOR, mammalian target of rapamycin | IKKβ, IκB kinase β | LRRK2, leucine-rich repeat kinase 2 | NAC, N-acetyl-L-cysteine | Nrf2, nuclear factor-erythroid 2-related factor 2 | PI3P, phosphatidylinositol 3-phosphate | ECH, enoyl-CoA hydratase | BNIP3L, BNIP3-like | Drp1, dynamin-related protein 1 | tfLC3, tandem fluorescently tagged LC3 | NF-κB, nuclear factor κB | BAG, Bcl-2-associated athanogene | Keap1, Kelch-like ECH-associated protein 1 | PE, phosphatidylethanolamine | 3-MA, 3-methyladenine | UCP, uncoupling protein | IκB, inhibitor of nuclear factor κB | FIP200, focal adhesion kinase family-interacting protein of 200 kDa | PI3K, phosphoinositide 3-kinase | HNE, 4-hydroxynonenal | Review | ALS, amyotrophic lateral sclerosis | ATG, AuTophaGy-related | adenovirus E18 19-kDa-interacting protein | Tzb, trastuzumab | mETC, mitochondrial electron-transport chain | Rubicon, RUN domain- and cysteine-rich domain-containing beclin-1-interacting protein | VDAC, voltage-dependent anion channel | IP3, inositol 1,4,5-trisphosphate | RFP, red fluorescent protein | ROS, reactive oxygen species | TNFα, tumour necrosis factor α | PINK1, PTEN (phosphatase and tensin homologue deleted on chromosome 10)-induced kinase 1 | GFP, green fluorescent protein | LAMP, lysosome-associated membrane protein | JNK1, c-Jun N-terminal kinase 1 | TAC, transverse aortic constriction | GABARAP, GABAA (γ-aminobutyric acid type A)-receptor-associated protein | HIF-1, hypoxia-inducible factor 1 | NOS, nitric oxide synthase | siRNA, small interfering RNA | SOD, superoxide dismutase | RLS, reactive lipid species | RNS, reactive nitrogen species | ER, endoplasmic reticulum | TIGAR, TP53 (tumour protein 53)-induced glycolysis and apoptosis regulator | Vps34, vacuolar protein sorting 34 | BNIP, Bcl-2
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5. Full Text Multiple functions of the SNARE protein Snap29 in autophagy, endocytic, and exocytic trafficking during epithelial formation in Drosophila
by Morelli, Elena and Ginefra, Pierpaolo and Mastrodonato, Valeria and Beznoussenko, Galina V and Rusten, Tor Erik and Bilder, David and Stenmark, Harald and Mironov, Alexandre A and Vaccari, Thomas
Autophagy, ISSN 1554-8627, 12/2014, Volume 10, Issue 12, pp. 2251 - 2268
How autophagic degradation is linked to endosomal trafficking routes is little known. Here we screened a collection of uncharacterized Drosophila mutants... 
Socs36E, suppressor of cytokine signaling at 36E | Vps25, vacuolar protein sorting 25 | dome | ESCRT, endosomal sorting complex required for transport | Syb, Synaptobrevin | hop-Stat92E, hopscotch-signal transducer and activator of transcription protein at 92E | SNARE | EM, electron microscopy | FE, follicular epithelium | usnp | CEDNIK, cerebral dysgenesis, neuropathy, ichthyosis, and palmoplantar keratoderma | V-ATPase, vacuolar H | dome, domeless | NECD, N extracellular domain | Vamp, vesicle-associated membrane protein | trafficking | N, Notch | CFP, cyan fluorescent protein | Atg, autophagy-related | GFP, green fluorescent protein | autophagy | MENE, mutant eye no eclosion | ATPase | Notch | WT, wild type | refP, refractory to sigma P | MVB, multivesicular body | + | Snap29 | NPF, asparagine-proline-phenylalanine | SNARE, soluble NSF attachment protein receptor | os, outstretched | E(spl)mβ-HLH, enhancer of split mβ, helix-loop-helix | Syx, syntaxin | histone H3, His3 | Snap29, synaptosomal-associated protein 29 kDa | Dome | Trafficking | Usnp | Autophagy | ACTIVATION | FUSION | ATPASE | COMPLEX GENES | CELL BIOLOGY | GENETIC SCREEN | SNAP-29 | PATHWAY | NOTCH RECEPTOR | UNCONVENTIONAL SECRETION | MELANOGASTER | Exosomes - metabolism | Vesicular Transport Proteins - metabolism | Humans | Phagosomes - metabolism | Qb-SNARE Proteins - metabolism | Protein Transport - physiology | Autophagy - physiology | Drosophila Proteins - metabolism | Cell Movement - physiology | Endosomes - metabolism | Drosophila melanogaster - metabolism | Animals | Qc-SNARE Proteins - metabolism | SNARE Proteins - metabolism | Protein Binding - physiology
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6. Full Text Autophagy and proteins involved in vesicular trafficking
by Amaya, Celina and Fader, Claudio Marcelo and Colombo, María Isabel
FEBS Letters, ISSN 0014-5793, 11/2015, Volume 589, Issue 22, pp. 3343 - 3353
Autophagy is an intracellular degradation system that, as a basic mechanism it delivers cytoplasmic components to the lysosomes in order to maintain adequate... 
Autophagosome biogenesis | Rab GTPase | Autophagosome–lysosome fusion | Autophagy | SNAP receptor | GTP | PAS | PtdIns3P | sequestosome 1 | TRAPP | LRRK1 | mechanistic target of rapamycin | 200 kD focal adhesion kinase family-interacting protein | unc-51 like autophagy activating kinase 1 | GAS-containing autophagosome-like vacuoles | FYCO1 | guanosine diphosphate | GDP | WD-repeat-interacting phosphoinositide proteins | CMA | guanosine nucleotide exchange factor | STX | AMD | mTOR | Group A Streptococcus | LC3 | GTPase activating protein | N-ethyl-maleimide-sensitive factor | NSF | endoplasmic reticulum exit sites | chaperone-mediated autophagy | autophagy-related protein | phosphatidylinositol 3-phosphate | light chain 3 | coat protein complex II | phagophore assembly site | Huntington disease | PKA | GEF | cAMP-dependent protein kinase | transport protein particle | GAP | NS4B | soluble N-ethyl-maleimide attachment proteins | FIP200 | GAS | MVB | AMPK | HCV | PIK3C3 | ULK1 | ERES | epidermal growth factor | SQSTM1 | class III phosphatidylinositol 3 kinase | AMP-activated protein kinase | FYVE and coiled-coil domain-containing 1 | SNARE | vacuolar protein sorting | COPII | non-structural protein 4B | age-related macular degeneration of the eye | multivesicular body | VPS | leucine-rich repeat kinase 1 | recycling endosome | WIPI | EGF | guanosine triphosphate | molecular weight | SNAP | Syntaxin | phosphatidylethanolamine | ATG | GcAVs | Hepatitis C virus | DFCP1 | endoplasmic reticulum | double FYVE domain-containing protein 1 | Autophagosome-lysosome fusion | OXIDATIVE STRESS | BIOCHEMISTRY & MOLECULAR BIOLOGY | PLASMA-MEMBRANE | RAB24 GTPASE | SMALL GTPASE | NEGATIVE REGULATOR | CELL BIOLOGY | MEMBRANE-FUSION | PROMOTES AUTOPHAGY | LONGIN DOMAIN | BIOPHYSICS | MULTIVESICULAR BODIES | WIPI PROTEINS | rab GTP-Binding Proteins - metabolism | Animals | Proteins - metabolism | Biological Transport | Humans | Intracellular Space - metabolism | SNARE Proteins - metabolism | Proteins
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7. Full Text Non‐autophagic roles of autophagy‐related proteins
by Subramani, Suresh and Malhotra, Vivek
EMBO reports, ISSN 1469-221X, 02/2013, Volume 14, Issue 2, pp. 143 - 151
Autophagy and autophagy‐related processes are fundamentally important in human health and disease. These processes are viewed primarily as cellular degradative... 
Atg protein function | unconventional protein secretion | autophagy | non‐autophagic roles | signalling | non-autophagic roles | COMPLEX | UBIQUITIN | BIOCHEMISTRY & MOLECULAR BIOLOGY | MEDIATED CLEAVAGE | PLASMA-MEMBRANE | CELL BIOLOGY | ATG16L1 | UNCONVENTIONAL SECRETION | LIPIDATION | BINDING | LC3 | ATG5 | Autophagy-Related Protein 12 | Ubiquitin-Activating Enzymes - physiology | Signal Transduction | Humans | Microfilament Proteins - physiology | Exocytosis | Autophagy | Microtubule-Associated Proteins - physiology | Protein Transport | Small Ubiquitin-Related Modifier Proteins - physiology | Host-Pathogen Interactions | Autophagy-Related Protein 8 Family | Adaptor Proteins, Signal Transducing - physiology | Autophagy-Related Protein 7 | Animals | Autophagy-Related Protein 5 | Intracellular Signaling Peptides and Proteins - physiology | Adipogenesis | Proteins | Signal transduction | Membranes | Cellular biology | Molecular biology | Review
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8. Full Text mTOR regulation of autophagy
by Jung, Chang Hwa and Ro, Seung-Hyun and Cao, Jing and Otto, Neil Michael and Kim, Do-Hyung
FEBS Letters, ISSN 0014-5793, 2010, Volume 584, Issue 7, pp. 1287 - 1295
Nutrient starvation induces autophagy in eukaryotic cells through inhibition of TOR (target of rapamycin), an evolutionarily-conserved protein kinase. TOR, as... 
Autophagy-related gene 1 | UNC-51-like kinase 1 | UNC-51-like kinase 2 | Mammalian target of rapamycin | Autophagy-related gene 13 | raptor | mTOR complex 2 | mTOR complex 1 | tuberous sclerosis complex | human ortholog of yeast vacuolar protein sorting 34 | GABARAP | focal adhesion kinase (FAK) family interacting protein of 200 kDa | mammalian target of rapamycin | γ-aminobutyric acid (GABA) receptor associated protein | Rheb | mTOR | regulatory associated protein of mTOR | GAP1 | rapamycin insensitive companion of mTOR | protein kinase B | GATE-16 | TSC | PKB | general amino acid permease 1 | Autophagy-related gene | trans-Golgi network | Golgi-associated ATPase enhancer of 16 kDa | rictor | Atg | 5′-AMP-activated protein kinase | FIP200 | AMPK | ULK2 | ras homolog enriched in brain | hVps34 | ULK1 | TGN | mTORC2 | mTORC1 | BINDING PARTNER | SIGNALING PATHWAYS | RAG GTPASES | PHOSPHATIDYLINOSITOL 3-KINASE | BIOCHEMISTRY & MOLECULAR BIOLOGY | SACCHAROMYCES-CEREVISIAE | P70 S6 KINASE | CELL BIOLOGY | BIOPHYSICS | PROTEIN-KINASE COMPLEX | INHIBITS CELL-GROWTH | ENDOPLASMIC-RETICULUM | C-ELEGANS | Saccharomyces cerevisiae - cytology | Animals | Models, Biological | Stress, Physiological | Saccharomyces cerevisiae - enzymology | Intracellular Signaling Peptides and Proteins - metabolism | Protein-Serine-Threonine Kinases - chemistry | TOR Serine-Threonine Kinases | Autophagy | Protein-Serine-Threonine Kinases - metabolism | Tuberous sclerosis | GABA | Protein kinases | Atg1 | Atg13
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