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1. Full Text Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)
by Chiari, Ylenia and Cahais, Vincent and Galtier, Nicolas and Delsuc, Frédéric
BMC Biology, ISSN 1741-7007, 07/2012, Volume 10, Issue 1, pp. 65 - 65
Background: The morphological peculiarities of turtles have, for a long time, impeded their accurate placement in the phylogeny of amniotes. Molecular data... 
FOSSIL CALIBRATIONS | MAXIMUM-LIKELIHOOD | AMNIOTE PHYLOGENY | BIOLOGY | DIAPSID REPTILES | ASSEMBLY PROGRAM | SPECIES DIVERGENCE TIMES | HOPEFUL MONSTERS | BAYESIAN-ESTIMATION | MITOCHONDRIAL GENOMES | MOLECULAR CLOCK | Genetic Variation | Turtles - genetics | Animals | Species Specificity | Phylogeny | Alligators and Crocodiles - genetics | Birds - genetics | Turtles | Phylogenetic trees | Genetic aspects | Research | Natural history | Crocodiles | Codon | Genomics | Crocodylidae | Fossils
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2. Full Text A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
by Prum, Richard O and Berv, Jacob S and Dornburg, Alex and Field, Daniel J and Townsend, Jeffrey P and Lemmon, Emily Moriarty and Lemmon, Alan R
Nature, ISSN 0028-0836, 10/2015, Volume 526, Issue 7574, pp. 569 - 573
Although reconstruction of the phylogeny of living birds has progressed tremendously in the last decade, the evolutionary history of Neoaves-a clade that... 
FOSSIL CALIBRATIONS | RATES | DIVERSIFICATION | RELAXED PHYLOGENETICS | MULTIDISCIPLINARY SCIENCES | MOLECULAR EVOLUTION | TREE | SPECIES DIVERGENCE TIMES | EVOLUTIONARY HISTORY | INFORMATIVENESS | LIFE | Genomics | Birds - classification | Extinction, Biological | Phylogeny | Sequence Analysis, DNA | Paleontology | Likelihood Functions | Animals | Bayes Theorem | High-Throughput Nucleotide Sequencing | Alligators and Crocodiles - genetics | Birds - genetics | Evolution, Molecular | Birds | Genetic aspects | Nucleotide sequencing | Observations | Methods | DNA sequencing | Evolution | Taxonomy | Genes
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3. Full Text A TIME-CALIBRATED SPECIES TREE OF CROCODYLIA REVEALS A RECENT RADIATION OF THE TRUE CROCODILES
by Jamie R. Oaks and R. Dudley
Evolution, ISSN 0014-3820, 11/2011, Volume 65, Issue 11, pp. 3285 - 3297
True crocodiles (Crocodylus) are the most broadly distributed, ecologically diverse, and species-rich crocodylian genus, comprising about half of extant... 
Crocodiles | Biological taxonomies | Taxa | Phylogenetics | Evolution | Phylogeny | Alligators | Modeling | Species | Fossils | Biogeography | Crocodylus | multispecies coalescent | Dirichlet process | relaxed clock | Relaxed clock | Multispecies coalescent | HORNED CROCODILE | FALSE GHARIAL | ORDER CROCODILIA | EVOLUTIONARY BIOLOGY | MITOCHONDRIAL-DNA EVIDENCE | PHYLOGENETIC-RELATIONSHIPS | DISCRETE CHARACTERS | INDO-PACIFIC | GENETICS & HEREDITY | ECOLOGY | FOSSIL RECORD | ANCESTRAL CHARACTER STATES | NILE CROCODILES | Likelihood Functions | Animals | Species Specificity | Base Sequence | Phylogeography | Molecular Sequence Data | Models, Genetic | Alligators and Crocodiles - genetics | Sequence Analysis, DNA | Evolution, Molecular | Origin of species | Distribution | Mass extinction theory | Morphological diversity | Research | Natural history | Crocodylidae
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4. Full Text Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
by Green, Richard E and Green, Richard E and Braun, Edward L and Braun, Edward L and Armstrong, Joel and Armstrong, Joel and Earl, Dent and Earl, Dent and Nguyen, Ngan and Nguyen, Ngan and Hickey, Glenn and Hickey, Glenn and Vandewege, Michael W and Vandewege, Michael W and St John, John A and St John, John A and Capella-Gutiérrez, Salvador and Capella-Gutiérrez, Salvador and Castoe, Todd A and Castoe, Todd A and Kern, Colin and Kern, Colin and Fujita, Matthew K and Fujita, Matthew K and Opazo, Juan C and Opazo, Juan C and Jurka, Jerzy and Jurka, Jerzy and Kojima, Kenji K and Kojima, Kenji K and Caballero, Juan and Caballero, Juan and Hubley, Robert M and Hubley, Robert M and Smit, Arian F and Smit, Arian F and Platt, Roy N and Platt, Roy N and Lavoie, Christine A and Lavoie, Christine A and Ramakodi, Meganathan P and Ramakodi, Meganathan P and Finger, John W and Finger, John W and Suh, Alexander and Suh, Alexander and Isberg, Sally R and Isberg, Sally R and Miles, Lee and Miles, Lee and Chong, Amanda Y and Chong, Amanda Y and Jaratlerdsiri, Weerachai and Jaratlerdsiri, Weerachai and Gongora, Jaime and Gongora, Jaime and Moran, Christopher and Moran, Christopher and Iriarte, Andrés and Iriarte, Andrés and McCormack, John and McCormack, John and Burgess, Shane C and Burgess, Shane C and Edwards, Scott V and Edwards, Scott V and Lyons, Eric and Lyons, Eric and Williams, Christina and Williams, Christina and Breen, Matthew and Breen, Matthew and Howard, Jason T and Howard, Jason T and Gresham, Cathy R and Gresham, Cathy R and Peterson, Daniel G and Peterson, Daniel G and Schmitz, Jürgen and Schmitz, Jürgen and Pollock, David D and Pollock, David D and Haussler, David and Haussler, David and Triplett, Eric W and Triplett, Eric W and Zhang, Guojie and Zhang, Guojie and Irie, Naoki and Irie, Naoki and Jarvis, Erich D and Jarvis, Erich D and Brochu, Christopher A and Brochu, Christopher A and Schmidt, Carl J and Schmidt, Carl J and McCarthy, Fiona M and McCarthy, Fiona M and Faircloth, Brant C and Faircloth, Brant C and ... and Teknisk-naturvetenskapliga vetenskapsområdet and Evolutionsbiologi and Biologiska sektionen and Uppsala universitet and Institutionen för ekologi och genetik
Science, ISSN 0036-8075, 2014, Volume 346, Issue 6215, pp. 1254449 - 1335
To provide context for the diversification of archosaurs-the group that includes crocodilians, dinosaurs, and birds-we generated draft genomes of three... 
MAXIMUM-LIKELIHOOD | SPECIES-TREE | ALIGNMENT | TEMPERATURE | BODY-SIZE | MULTIDISCIPLINARY SCIENCES | ULTRACONSERVED ELEMENTS | PHYLOGENETIC ANALYSES | AVIAN GENOME | DIVERGENCE TIMES | SISTER GROUP | Dinosaurs - classification | Molecular Sequence Annotation | Transcriptome | Molecular Sequence Data | Birds - classification | Reptiles - genetics | Phylogeny | Reptiles - classification | Sequence Analysis, DNA | DNA Transposable Elements | Biological Evolution | Genetic Variation | Sequence Alignment | Alligators and Crocodiles - classification | Animals | Dinosaurs - genetics | Conserved Sequence | Alligators and Crocodiles - genetics | Birds - genetics | Genome | Evolution, Molecular | Dinosaurs | Crocodiles | Evolutionary biology | Genomics | Fossils | Reduction | Genes | Turtles | Genetics | Evolution | Genomes | Nucleotides | Biological Sciences | Evolutionsbiologi | Naturvetenskap | Natural Sciences | Evolutionary Biology | Biologiska vetenskaper
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5. Full Text Cuban crocodiles pose conservation conundrum
by Reardon, Sara
Nature, ISSN 0028-0836, 09/2016, Volume 537, Issue 7622, pp. 596 - 597
The facility is the centrepiece of the Cuban government's 56-year effort to save the critically endangered Cuban crocodile (Crocodylus rhombifer). In January,... 
Conservation of Natural Resources - methods | Cuba | Animals | Species Specificity | Alligators and Crocodiles - physiology | Breeding | Hybridization, Genetic | Animals, Wild - genetics | Alligators and Crocodiles - genetics | Endangered Species | Sequence Analysis, DNA | Crocodiles | Protection and preservation | Crocodylidae | Endangered & extinct species | Genetic diversity | Wildlife conservation | Research
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6. Full Text Genome analysis and signature discovery for diving and sensory properties of the endangered Chinese alligator
by Qiu-Hong Wan Sheng-Kai Pan Li Hu Ying Zhu Peng-Wei Xu Jin-Quan Xia Hui Chen Gen-Yun He Jing He Xiao-Wei Ni Hao-Long Hou Sheng-Guang Liao Hai-Qiong Yang Ying Chen Shu-Kun Gao Yun-Fa Ge Chang-Chang Cao Peng-Fei Li Li-Ming Fang Li Liao Shu Zhang Meng-Zhen Wang Wei Dong Sheng-Guo Fang
细胞研究：英文版, ISSN 1001-0602, 2013, Volume 23, Issue 9, pp. 1091 - 1105
Crocodilians are diving reptiles that can hold their breath under water for long periods of time and are crepuscular animals with excellent sensory abilities.... 
基因组序列 | 潜水 | 中国 | 基因组分析 | 感官特性 | 扬子鳄 | 血红蛋白基因 | 灭绝 | FISH | olfaction | immunity | SNP | diving hypoxia | oxidative phosphorylation | PHYSIOLOGY | CROCODILE | FAMILY | CELL BIOLOGY | DM-DOMAIN GENE | EVOLUTION | SUBMERGENCE | ADAPTATION | SEQUENCE | SEX DETERMINATION | AMERICAN ALLIGATOR | Visual Perception - genetics | Opsins - genetics | Smell - genetics | Muscle Contraction - genetics | Night Vision - genetics | Sex Determination Processes - genetics | Genome - genetics | Hemoglobins - genetics | Transcription Factors - genetics | Sequence Analysis, DNA | Oxygen - metabolism | Alligators and Crocodiles - classification | Animals | Immune System | Base Sequence | Olfactory Pathways - cytology | DNA Transposable Elements - genetics | Bicarbonates - metabolism | Biological Transport - genetics | Base Composition - genetics | Alligators and Crocodiles - genetics | Energy Metabolism - genetics | Alligators and Crocodiles - metabolism | Original
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7. Full Text Evolution of the α 2 -adrenoreceptors in vertebrates: ADRA2D is absent in mammals and crocodiles
by Céspedes, Héctor A and Zavala, Kattina and Vandewege, Michael W and Opazo, Juan C
General and comparative endocrinology, ISSN 0016-6480, 09/2017, Volume 250, pp. 85 - 94
Evolutionary studies of genes that have been functionally characterized and whose variation has been associated with pathological conditions represent an... 
Mammals - genetics | Receptors, Adrenergic, alpha-2 - genetics | Conserved Sequence - genetics | Synteny - genetics | RNA, Messenger - genetics | Phylogeny | RNA, Messenger - metabolism | Polymorphism, Genetic | Likelihood Functions | Animals | Transcription, Genetic | Alligators and Crocodiles - genetics | Mammals - blood | Evolution, Molecular
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8. Full Text An ancient icon reveals new mysteries: mummy DNA resurrects a cryptic species within the Nile crocodile
by HEKKALA, EVON and SHIRLEY, MATTHEW H and AMATO, GEORGE and AUSTIN, JAMES D and CHARTER, SUELLEN and THORBJARNARSON, JOHN and VLIET, KENT A and HOUCK, MARLYS L and DESALLE, ROB and BLUM, MICHAEL J
Molecular Ecology, ISSN 0962-1083, 10/2011, Volume 20, Issue 20, pp. 4199 - 4215
The Nile crocodile (Crocodylus niloticus) is an ancient icon of both cultural and scientific interest. The species is emblematic of the great civilizations of... 
Crocodylus | C. suchus | ancient DNA | African biogeography | mummy | C. niloticus | WEST-AFRICA | PHYLOGEOGRAPHY | BIOGEOGRAPHY | BIOCHEMISTRY & MOLECULAR BIOLOGY | POPULATIONS | SOFTWARE | DISPERSAL | EVOLUTIONARY BIOLOGY | CROCODYLUS-NILOTICUS | AMPLIFICATION | EVOLUTION | LARGE PHYLOGENIES | ECOLOGY | Haplotypes | History, Ancient | Humans | Phylogeography | Africa | Egypt, Ancient | DNA - genetics | Sequence Alignment | Animals | Genetic Speciation | Mummies - history | Alligators and Crocodiles - genetics | Evolution, Molecular | Crocodiles | Environmental associations | Wildlife conservation | Zoos | Evolutionary biology | Ancient Egypt | Analysis | DNA | Genetic research | Museums | Crocodylidae | Mummies | Deoxyribonucleic acid--DNA
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9. Full Text Are crocodiles really monophyletic?—Evidence for subdivisions from sequence and morphological data
by McAliley, L. Rex and Willis, Ray E and Ray, David A and White, P. Scott and Brochu, Christopher A and Densmore, Llewellyn D
Molecular Phylogenetics and Evolution, ISSN 1055-7903, 2006, Volume 39, Issue 1, pp. 16 - 32
Recently, the phylogenetic placement of the African slender snouted crocodile, , has come under scrutiny and herein we address this issue using molecular and... 
C-mos | Systematics | Mitochondrial ND6 | Mitochondrial control region | Crocodylus | Crocodylus cataphractus | ODC | Mecistops | BIOCHEMISTRY & MOLECULAR BIOLOGY | MOLECULAR SYSTEMATICS | systematics | c-mos | NUCLEOTIDE-SEQUENCES | mitochondrial ND6 | CONTROL REGION | EVOLUTIONARY BIOLOGY | POLYMERASE-CHAIN-REACTION | PHYLOGENETIC-RELATIONSHIPS | DNA | mitochondrial control region | GENETICS & HEREDITY | DIVERGENCE | NORTH-AMERICA | Alligators and Crocodiles - classification | Animals | DNA, Mitochondrial - genetics | Cell Nucleus - genetics | Genes, mos - genetics | Cytochromes b - genetics | Alligators and Crocodiles - anatomy & histology | NADH Dehydrogenase - genetics | Aldehyde Oxidoreductases - genetics | Phylogeny | Alligators and Crocodiles - genetics | Ornithine Decarboxylase - genetics | Analysis | Transfer RNA
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10. Full Text Genetic evidence of hybridization between the critically endangered Cuban crocodile and the American crocodile: Implications for population history and in situ/ex situ conservation
by Milián-García, Y and Ramos-Targarona, R and Pérez-Fleitas, E and Sosa-Rodríguez, G and Guerra-Manchena, L and Alonso-Tabet, M and Espinosa-López, G and Russello, M.A
Heredity, ISSN 0018-067X, 03/2015, Volume 114, Issue 3, pp. 272 - 280
Inter-specific hybridization may be especially detrimental when one species is extremely rare and the other is abundant owing to the potential for genetic... 
Haplotypes | United States | Molecular Sequence Data | Genotype | Male | Sequence Analysis, DNA | Cuba | Animals | DNA, Mitochondrial - genetics | Cell Nucleus - genetics | Hybridization, Genetic | Alleles | Female | Heterozygote | Conservation of Natural Resources | Alligators and Crocodiles - genetics | Endangered Species | Microsatellite Repeats | Crocodiles | Endangered species | Genetic aspects | Mitochondrial DNA | Animal populations | Research | Hybridization | Crocodylidae | Endangered & extinct species | Genetics | Original
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11. Full Text High genetic diversity and demographic history of captive Siamese and Saltwater crocodiles suggest the first step toward the establishment of a breeding and reintroduction program in Thailand
by Lapbenjakul, Sorravis and Thapana, Watcharaporn and Twilprawat, Panupon and Muangmai, Narongrit and Kanchanaketu, Thiti and Temsiripong, Yosapong and Unajak, Sasimanas and Peyachoknagul, Surin and Srikulnath, Kornsorn
PLoS ONE, ISSN 1932-6203, 09/2017, Volume 12, Issue 9, p. e0184526
The Siamese crocodile (Crocodylus siamensis) and Saltwater crocodile (C. porosus) are two of the most endangered animals in Thailand. Their numbers have been... 
COMPLETE MITOCHONDRIAL GENOME | ALLELE FREQUENCY DATA | CONSERVATION UNITS | DNA POLYMORPHISM | MULTIDISCIPLINARY SCIENCES | CROCODYLUS-ACUTUS | INBREEDING COEFFICIENTS | HYBRIDIZATION | STATISTICAL TESTS | PHYLOGENETIC TREES | POROSUS | Genetic Variation | Haplotypes | Alligators and Crocodiles - classification | Animals | Alligators and Crocodiles - physiology | Breeding | Conservation of Natural Resources | Phylogeny | Alligators and Crocodiles - genetics | Thailand | Microsatellite Repeats - genetics | Crocodiles | Endangered species | Protection and preservation | Environmental aspects | Genetic aspects | Research | Crocodylidae | Biological diversity | Aquatic reptiles | Populations | Endangered animals | Conservation | Mitochondrial DNA | Hybridization | Population genetics | Endangered & extinct species | Demographics | Species | Deoxyribonucleic acid--DNA | Natural resources | Hunting | Wildlife conservation | Microsatellites | Extinction | Markers | Population structure | Genetic diversity | Topology | Reintroduction | Heterozygosity | Genetic markers | Habitat fragmentation | Viability | Deoxyribonucleic acid | DNA
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