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1. Full Text Genotyping‐in‐Thousands by sequencing (GT‐seq): A cost effective SNP genotyping method based on custom amplicon sequencing
by Campbell, Nathan R and Harmon, Stephanie A and Narum, Shawn R
Molecular ecology resources, ISSN 1755-098X, 07/2015, Volume 15, Issue 4, pp. 855 - 867
GT‐seq | genotyping by sequencing | amplicon sequencing | SNP | next‐generation sequencing | GT-seq | Next-generation sequencing | Amplicon sequencing | Genotyping by sequencing | Biochemistry & Molecular Biology | Environmental Sciences & Ecology | Ecology | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | High-Throughput Nucleotide Sequencing - economics | Computational Biology - methods | Animals | Cost-Benefit Analysis | Genotyping Techniques - economics | Oncorhynchus mykiss - classification | Oncorhynchus mykiss - genetics | Polymorphism, Single Nucleotide | Genotyping Techniques - methods | High-Throughput Nucleotide Sequencing - methods | Computational Biology - economics | Analysis | Methods | Single nucleotide polymorphisms | Fish | Libraries | Polymorphism | Index Medicus
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2. Full Text Random PCR‐based genotyping by sequencing technology GRAS‐Di (genotyping by random amplicon sequencing, direct) reveals genetic structure of mangrove fishes
by Hosoya, Sho and Hirase, Shotaro and Kikuchi, Kiyoshi and Nanjo, Kusuto and Nakamura, Yohei and Kohno, Hiroyoshi and Sano, Mitsuhiko
Molecular ecology resources, ISSN 1755-098X, 09/2019, Volume 19, Issue 5, pp. 1153 - 1163
genotyping by random amplicon sequencing | direct | genetic structure | mangrove | SNP | fish | Biochemistry & Molecular Biology | Environmental Sciences & Ecology | Ecology | Life Sciences & Biomedicine | Evolutionary Biology | Science & Technology | Fishes - genetics | Animals | Genetics, Population - methods | Fishes - classification | Biota | Japan | Genotyping Techniques - methods | Islands | Sequence Analysis, DNA - methods | Polymerase Chain Reaction - methods | Seawater | Life history | Genetic structure | Estuaries | Admixtures | Principal components analysis | Mapping | Single-nucleotide polymorphism | Rivers | Nucleotides | Population genetics | Gene sequencing | Polymerase chain reaction | Gene flow | Genotyping | Technology | Genetic analysis | DNA fragmentation | Ecological monitoring | Gene mapping | Differentiation | Species | Deoxyribonucleic acid--DNA | DNA sequencing | Index Medicus
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3. Full Text The Interlaboratory RObustness of Next-generation sequencing (IRON) study: a deep sequencing investigation of TET2, CBL and KRAS mutations by an international consortium involving 10 laboratories
by Kohlmann, A and Klein, H.U and Weissmann, S and Bresolin, S and Chaplin, T and Cuppens, H and Haschke-Becher, E and Garicochea, B and Grossmann, V and Hanczaruk, B and Hebestreit, K and Gabriel, C and Iacobucci, I and Jansen, J.H and Kronnie, G. Te and Locht, L.T. van de and Martinelli, G and McGowan, K and Schweiger, M.R and Timmermann, B and Vandenberghe, P and Young, B.D and Dugas, M and Haferlach, T
Leukemia, ISSN 0887-6924, 2011, Volume 25, Issue 12, pp. 1840 - 1848
coverage | amplicon | 454 | deep sequencing | next-generation sequencing | mutation analysis | Oncology | Life Sciences & Biomedicine | Hematology | Science & Technology | Hematologic and hematopoietic diseases | Biological and medical sciences | Medical sciences | Proto-Oncogene Proteins c-cbl - genetics | ras Proteins - genetics | Proto-Oncogene Proteins p21(ras) | Prognosis | Humans | Leukemia, Myelomonocytic, Chronic - genetics | Middle Aged | Male | Proto-Oncogene Proteins - genetics | DNA-Binding Proteins - genetics | Mutation - genetics | DNA Mutational Analysis | Polymerase Chain Reaction | Aged, 80 and over | Female | Aged | High-Throughput Nucleotide Sequencing | Cohort Studies | Nucleotide sequence | Gene mutations | Physiological aspects | Genetic aspects | Research | Diagnosis | Myeloproliferative disorders | Index Medicus
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4. Full Text High-Throughput Genomic Data in Systematics and Phylogenetics
by Emily Moriarty Lemmon and Alan R. Lemmon
Annual review of ecology, evolution, and systematics, ISSN 1543-592X, 1/2013, Volume 44, Issue 1, pp. 99 - 121
Polymerase chain reaction | Biological taxonomies | Taxa | Genomics in Ecology, Evolution and Ststematics Theme | Genomics | Phylogenetics | Genetic loci | Genomes | Phylogeny | Sequencing | Hybridity | Genomic partitioning | Hybrid enrichment | Targeted amplicon sequencing | High-throughput sequencing | Model selection | Locus selection | Transcriptome sequencing | Anchored phylogenomics | RAD sequencing | Next-generation sequencing | Ultraconserved element enrichment | Phylogeny estimation | Target enrichment | Phylogenomics | Research | Nucleotide sequencing | DNA sequencing | Data analysis | Accuracy | Comparative analysis
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5. Full Text Multiplex PCR targeted amplicon sequencing (MTA-Seq): Simple, flexible, and versatile SNP genotyping by highly multiplexed PCR amplicon sequencing
by Onda, Yoshihiko and Takahagi, Kotaro and Shimizu, Minami and Inoue, Komaki and Mochida, Keiichi and RIKEN Center for Sustainable Resource Science, Yokohama (Japan)
Frontiers in plant science, ISSN 1664-462X, 03/2018, Volume 9, pp. 201 - 201
Amplicon sequence | Marker panel | Genotyping | SNP | Natural accession | Brachypodium distachyon | Life Sciences & Biomedicine | Plant Sciences | Science & Technology | Genomics | Genetic polymorphisms | natural accession | marker panel | BASIC BIOLOGICAL SCIENCES | genotyping | amplicon sequence
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6. Full Text Reproducibility and quantitation of amplicon sequencing-based detection
by Zhou, Jizhong and Wu, Liyou and Deng, Ye and Zhi, Xiaoyang and Jiang, Yi-Huei and Tu, Qichao and Xie, Jianping and Van Nostrand, Joy D and He, Zhili and Yang, Yunfeng
The ISME Journal, ISSN 1751-7362, 08/2011, Volume 5, Issue 8, pp. 1303 - 1313
pyrosequencing | random sampling | amplicon sequencing | metagenomics | quantitation | reproducibility | Environmental Sciences & Ecology | Ecology | Life Sciences & Biomedicine | Microbiology | Science & Technology | Shewanella - isolation & purification | DNA, Bacterial - genetics | Climate Change | Shewanella - genetics | Soil Microbiology | Oklahoma | Metagenomics - methods | RNA, Ribosomal, 16S - genetics | Sequence Analysis, DNA - methods | Index Medicus | Original
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7. Full Text Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing
by Ranjan, Ravi and Rani, Asha and Metwally, Ahmed and McGee, Halvor S and Perkins, David L
Biochemical and biophysical research communications, ISSN 0006-291X, 01/2016, Volume 469, Issue 4, pp. 967 - 977
16S rRNA | Metagenomics | Microbiota | Whole genome shotgun sequencing | Next-generation sequencing | Amplicon sequencing | Microbiome | Biochemistry & Molecular Biology | Biophysics | Life Sciences & Biomedicine | Science & Technology | Reproducibility of Results | Humans | Molecular Sequence Data | Bacteria - genetics | Bacteria - isolation & purification | Metagenome - genetics | DNA, Bacterial - genetics | Microbiota - genetics | Base Sequence | Chromosome Mapping - methods | Sensitivity and Specificity | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Sequence Analysis, DNA - methods | Genetic research | Microbiota (Symbiotic organisms) | RNA | Analysis | Genomics | Index Medicus
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8. Full Text Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing
by Lange, Vinzenz and Böhme, Irina and Hofmann, Jan and Lang, Kathrin and Sauter, Jürgen and Schöne, Bianca and Paul, Patrick and Albrecht, Viviane and Andreas, Johanna M and Baier, Daniel M and Nething, Jochen and Ehninger, Ulf and Schwarzelt, Carmen and Pingel, Julia and Ehninger, Gerhard and Schmidt, Alexander H
BMC genomics, ISSN 1471-2164, 01/2014, Volume 15, Issue 1, pp. 63 - 63
Dual indexing | Amplicon-based sequencing | Illumina MiSeq | 4-primer approach | HLA typing | Human leukocyte antigen | Fluidigm Access Array | NGS | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Microfluidic Analytical Techniques | DNA - isolation & purification | DNA - analysis | Exons | Humans | Alleles | Polymerase Chain Reaction | DNA Primers - metabolism | Histocompatibility Testing - economics | HLA Antigens - genetics | Sequence Analysis, DNA | Histocompatibility Testing - instrumentation | Economic aspects | Pumping machinery industry | Nucleotide sequencing | Analysis | DNA sequencing | Data analysis | Genes | Deoxyribonucleic acid--DNA | Stem cells | Index Medicus | Data processing
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9. Full Text 2.7 million samples genotyped for HLA by next generation sequencing: Lessons learned
by Schöfl, Gerhard and Schöfl, Gerhard and Lang, Kathrin and Lang, Kathrin and Quenzel, Philipp and Quenzel, Philipp and Böhme, Irina and Böhme, Irina and Sauter, Jürgen and Sauter, Jürgen and Hofmann, Jan A and Hofmann, Jan A and Pingel, Julia and Pingel, Julia and Schmidt, Alexander H and Schmidt, Alexander H and Lange, Vinzenz and Lange, Vinzenz
BMC genomics, ISSN 1471-2164, 02/2017, Volume 18, Issue 1, pp. 161 - 161
High throughput | HLA genotyping | High resolution | Novel alleles | Amplicon PCR | Primer dimers | PCR chimerism | DKMS | Next generation sequencing | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Computational Biology - methods | Humans | Alleles | Genotype | High-Throughput Nucleotide Sequencing | HLA Antigens - genetics | Genotyping Techniques | Sequence Analysis, DNA | Polymerase chain reaction | Usage | Histocompatibility antigens | HLA histocompatibility antigens | Research | High-throughput screening (Biochemical assaying) | Recombination | Compliance | Statistical methods | Optimization | Gene sequencing | Next-generation sequencing | Quality | Drb1 protein | Phosphorothioate | Life sciences | Mathematical models | Deoxyribonucleic acid--DNA | Antigens | CCR5 protein | Automation | Statistical analysis | Nanofluids | Workflow | ABO system | Loci | Statistical models | Genotyping | Stem cells | Tagging | Histocompatibility antigen HLA | Dimers | Tissue typing | Fluidics | Index Medicus
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10. Full Text Sequencing Strategies for Fusion Gene Detection
by Heyer, Erin E and Blackburn, James
BioEssays, ISSN 0265-9247, 07/2020, Volume 42, Issue 7, pp. e2000016 - n/a
RNA sequencing | whole genome sequencing | cancer diagnostics | hybridization capture sequencing | amplicon sequencing | fusion gene detection | next‐generation sequencing | next-generation sequencing | Biochemistry & Molecular Biology | Biology | Life Sciences & Biomedicine - Other Topics | Life Sciences & Biomedicine | Science & Technology | Data analysis | Impact fusion | Innovations | Fluorescence | Chromosome rearrangements | Cost analysis | Fusion protein | Index Medicus
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