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1. Full Text The LC3-conjugation machinery specifies the loading of RNA-binding proteins into extracellular vesicles
by Leidal, Andrew M and Huang, Hector H and Marsh, Timothy and Solvik, Tina and Zhang, Dachuan and Ye, Jordan and Kai, FuiBoon and Goldsmith, Juliet and Liu, Jennifer Y and Huang, Yu-Hsin and Monkkonen, Teresa and Vlahakis, Ariadne and Huang, Eric J and Goodarzi, Hani and Yu, Li and Wiita, Arun P and Debnath, Jayanta
Nature cell biology, ISSN 1465-7392, 02/2020, Volume 22, Issue 2, pp. 187 - 199
Life Sciences & Biomedicine | Science & Technology | Cell Biology | Autophagosomes - chemistry | RNA-Binding Proteins - genetics | Sphingomyelin Phosphodiesterase - genetics | Receptors, Estrogen - metabolism | Extracellular Vesicles - chemistry | Lysosomes - chemistry | Microtubule-Associated Proteins - genetics | Microtubule-Associated Proteins - metabolism | Humans | Adaptor Proteins, Vesicular Transport - deficiency | Adaptor Proteins, Vesicular Transport - genetics | Gene Expression Profiling | Intracellular Signaling Peptides and Proteins - metabolism | Extracellular Vesicles - metabolism | Lysosomes - metabolism | Biological Transport | Sphingomyelin Phosphodiesterase - metabolism | HEK293 Cells | RNA, Small Untranslated - genetics | Autophagy - genetics | Proteomics - methods | Autophagy-Related Proteins - genetics | Intracellular Signaling Peptides and Proteins - genetics | RNA, Small Untranslated - metabolism | Autophagy-Related Proteins - deficiency | Biotinylation | Receptors, Estrogen - genetics | Matrix Attachment Region Binding Proteins - metabolism | Gene Expression Regulation | Nuclear Matrix-Associated Proteins - metabolism | Autophagosomes - metabolism | Autophagy-Related Protein 7 - genetics | Heterogeneous-Nuclear Ribonucleoprotein K - genetics | RNA-Binding Proteins - classification | Heterogeneous-Nuclear Ribonucleoprotein K - metabolism | Animals | Nuclear Matrix-Associated Proteins - genetics | Matrix Attachment Region Binding Proteins - genetics | RAW 264.7 Cells | Mice | RNA-Binding Proteins - metabolism | Autophagy-Related Protein 7 - deficiency | RNA | Binding proteins | Protein binding | Binding | Cargo | Profiling | Target recognition | Secretion | Secretome | Ribonucleic acid--RNA | Autophagy | Machinery | Sphingomyelin phosphodiesterase | Proteins | Ribonucleoprotein K | Vesicles | RNA-binding protein | Proteomics | Packaging | Conjugation | Phagocytosis | Index Medicus
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2. Full Text SNAP23 regulates BAX-dependent adipocyte programmed cell death independently of canonical macroautophagy
by Feng, Daorong and Amgalan, Dulguun and Singh, Rajat and Wei, Jianwen and Wen, Jennifer and Wei, Tszki Peter and McGraw, Timothy E and Kitsis, Richard N and Pessin, Jeffrey E
The Journal of clinical investigation, ISSN 0021-9738, 08/2018, Volume 128, Issue 9, pp. 3941 - 3956
Life Sciences & Biomedicine | Medicine, Research & Experimental | Science & Technology | Research & Experimental Medicine | Vesicular Transport Proteins - metabolism | Autophagy-Related Protein 7 - metabolism | Qb-SNARE Proteins - metabolism | Qb-SNARE Proteins - genetics | Adipocytes - cytology | Male | Autophagy - physiology | Membrane Proteins - deficiency | Qb-SNARE Proteins - deficiency | Qc-SNARE Proteins - metabolism | Proteolysis | Membrane Proteins - metabolism | bcl-2-Associated X Protein - deficiency | Autophagy-Related Proteins - genetics | bcl-2-Associated X Protein - genetics | Autophagy-Related Proteins - deficiency | Membrane Proteins - genetics | Vesicular Transport Proteins - genetics | bcl-2-Associated X Protein - metabolism | Lipodystrophy - metabolism | 3T3-L1 Cells | Autophagy-Related Protein 7 - genetics | Qc-SNARE Proteins - deficiency | Mice, Knockout | Animals | Vesicular Transport Proteins - deficiency | Adipocytes - metabolism | Lipodystrophy - pathology | Qc-SNARE Proteins - genetics | Mice | Apoptosis - physiology | Autophagy-Related Proteins - metabolism | Autophagy-Related Protein 7 - deficiency | Physiological aspects | Autophagy (Cytology) | Apoptotic proteins | Fat cells | Health aspects | Membrane proteins | Type 2 diabetes | Prevention | Adipose tissues | Liver | Insulin resistance | Biochemistry | Apoptosis | Membranes | Adipose tissue | Bax protein | Lysosomes | SNAP receptors | Biosynthesis | Adipocytes | Vesicle fusion | Glucose | Autophagy | Proteins | Hyperglycemia | Cell activation | Fatty liver | Rodents | Diabetes mellitus (non-insulin dependent) | Phenotypes | Diabetes mellitus | Inflammation | Insulin | Steatosis | Cell death | Lipodystrophy | Mutation | Vacuoles | Index Medicus | Abridged Index Medicus
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3. Full Text SMAC Mimetics Induce Autophagy-Dependent Apoptosis of HIV-1-Infected Resting Memory CD4+ T Cells
by Campbell, Grant R and Bruckman, Rachel S and Chu, Yen-Lin and Trout, Rodney N and Spector, Stephen A
Cell host & microbe, ISSN 1931-3128, 11/2018, Volume 24, Issue 5, pp. 689 - 702.e7
caspase 8 | autophagy | HIV | CD4+ T cell | SMAC mimetics | apoptosis | XIAP | Fas | RIPK1 | BIRC2 | CD4+ T cell | Parasitology | Life Sciences & Biomedicine | Microbiology | Science & Technology | Virology | Receptor-Interacting Protein Serine-Threonine Kinases - metabolism | HIV-1 - pathogenicity | Apoptosis - drug effects | Autophagy-Related Protein 7 - metabolism | Cyclohexanes - pharmacology | Humans | Caspase 8 - metabolism | Autophagy - physiology | Intracellular Signaling Peptides and Proteins - metabolism | Autophagy - drug effects | CD4-Positive T-Lymphocytes - immunology | HIV Infections - immunology | HIV-1 - physiology | Mitochondrial Proteins - metabolism | Baculoviral IAP Repeat-Containing 3 Protein - metabolism | Cell Death | Indoles - pharmacology | Inhibitor of Apoptosis Proteins - metabolism | Sequestosome-1 Protein - metabolism | Cell Line | HIV-1 - drug effects | Dipeptides - pharmacology | Fas-Associated Death Domain Protein - metabolism | Ubiquitin-Protein Ligases - metabolism | Benzoquinones - pharmacology | Pyrroles - pharmacology | Apoptosis Regulatory Proteins | X-Linked Inhibitor of Apoptosis Protein - metabolism | Autophagy-Related Protein 5 - metabolism | Apoptosis - physiology | Beclin-1 - metabolism | Proteins | Medical colleges | Trout | Communicable diseases | T cells | HIV (Viruses) | Health aspects | HIV infection | Apoptosis | Index Medicus
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4. Full Text In Vitro Reconstitution of Atg8 Conjugation and Deconjugation
by Fracchiolla, D and Zens, B and Martens, S
Methods in enzymology, ISSN 0076-6879, 2017, Volume 587, pp. 377 - 390
Phosphatidylethanolamine | Atg8 lipidation | Isolation membrane | SUVs | GUVs | Reconstitution | Autophagy | Ubiquitin-like system | Autophagy-Related Proteins - isolation & purification | Microtubule-Associated Proteins - genetics | Microtubule-Associated Proteins - metabolism | Autophagy-Related Protein 7 - metabolism | Multiprotein Complexes | Unilamellar Liposomes - chemistry | Green Fluorescent Proteins - genetics | Autophagy-Related Protein 8 Family - metabolism | Ubiquitin-Conjugating Enzymes - isolation & purification | Recombinant Proteins - isolation & purification | Autophagy-Related Protein 7 - isolation & purification | Saccharomyces cerevisiae Proteins - isolation & purification | Microtubule-Associated Proteins - isolation & purification | Autophagy-Related Protein 8 Family - genetics | Autophagy-Related Proteins - genetics | Recombinant Proteins - metabolism | Green Fluorescent Proteins - metabolism | Ubiquitin-Conjugating Enzymes - genetics | Recombinant Proteins - genetics | Autophagy-Related Protein 8 Family - chemistry | Saccharomyces cerevisiae Proteins - genetics | Autophagy-Related Protein 12 - metabolism | Autophagy-Related Protein 7 - genetics | Unilamellar Liposomes - metabolism | Ubiquitin-Conjugating Enzymes - metabolism | Saccharomyces cerevisiae Proteins - metabolism | Autophagy-Related Protein 5 - metabolism | Luminescent Proteins - genetics | Phosphatidylethanolamines - metabolism | Autophagy-Related Proteins - metabolism | Luminescent Proteins - metabolism | Saccharomyces cerevisiae Proteins - chemistry | Index Medicus
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5. Full Text Phosphorylation of p62 by AMP-activated protein kinase mediates autophagic cell death in adult hippocampal neural stem cells
by Ha, Shinwon and Jeong, Seol-Hwa and Yi, Kyungrim and Chung, Kyung Min and Hong, Caroline Jeeyeon and Kim, Seong Who and Kim, Eun-Kyoung and Yu, Seong-Woon
The Journal of biological chemistry, ISSN 0021-9258, 2017, Volume 292, Issue 33, pp. 13795 - 13808
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | AMP-Activated Protein Kinases - metabolism | Autophagy-Related Protein 7 - metabolism | Humans | Protein Transport - drug effects | Hippocampus - drug effects | Neural Stem Cells - cytology | Recombinant Fusion Proteins - metabolism | Autophagy - drug effects | Protein Processing, Post-Translational - drug effects | RNA Interference | Gene Deletion | Phosphorylation - drug effects | Sequestosome-1 Protein - metabolism | Adult Stem Cells - drug effects | Autophagy-Related Protein 7 - antagonists & inhibitors | Cell Survival - drug effects | Nerve Tissue Proteins - antagonists & inhibitors | Adult Stem Cells - cytology | AMP-Activated Protein Kinases - antagonists & inhibitors | Sequestosome-1 Protein - antagonists & inhibitors | Cells, Cultured | Neural Stem Cells - drug effects | Rats | Recombinant Fusion Proteins - chemistry | Enzyme Activation - drug effects | Hippocampus - cytology | Autophagy-Related Protein 7 - genetics | Nerve Tissue Proteins - genetics | AMP-Activated Protein Kinases - chemistry | Nerve Tissue Proteins - metabolism | Hippocampus - metabolism | Point Mutation | Sequestosome-1 Protein - genetics | Adult Stem Cells - metabolism | Animals | Protein Kinase Inhibitors - pharmacology | Neural Stem Cells - metabolism | AMP-Activated Protein Kinases - genetics | Amino Acid Substitution | Index Medicus | AMP-activated kinase (AMPK) | mitophagy | autophagy | phosphorylation | p62 (sequestosome 1 (SQSTM1)) | Protein Synthesis and Degradation
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6. Full Text Autophagy-Related Protein 7 Deficiency in Amyloid β (Aβ) Precursor Protein Transgenic Mice Decreases Aβ in the Multivesicular Bodies and Induces Aβ Accumulation in the Golgi
by Nilsson, Per and Sekiguchi, Misaki and Akagi, Takumi and Izumi, Shinichi and Komori, Toshihisa and Hui, Kelvin and Sörgjerd, Karin and Tanaka, Motomasa and Saito, Takashi and Iwata, Nobuhisa and Saido, Takaomi C
The American journal of pathology, ISSN 0002-9440, 2015, Volume 185, Issue 2, pp. 305 - 313
Pathology | Life Sciences & Biomedicine | Science & Technology | Protein Aggregates | Peptide Fragments - metabolism | Microtubule-Associated Proteins - metabolism | Mice, Transgenic | Golgi Apparatus - pathology | Alzheimer Disease - pathology | Autophagy-Related Protein 7 | Animals | Amyloid beta-Peptides - genetics | Alzheimer Disease - metabolism | Amyloid beta-Peptides - metabolism | Golgi Apparatus - metabolism | Mice | Microtubule-Associated Proteins - deficiency | Alzheimer Disease - genetics | Peptide Fragments - genetics | Golgi Apparatus - genetics | Index Medicus | Abridged Index Medicus | Medicin och hälsovetenskap
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7. Full Text Akt2 ablation prolongs life span and improves myocardial contractile function with adaptive cardiac remodeling: role of Sirt1‐mediated autophagy regulation
by Ren, Jun and Yang, Lifang and Zhu, Li and Xu, Xihui and Ceylan, Asli F and Guo, Wei and Yang, Jian and Zhang, Yingmei
Aging cell, ISSN 1474-9718, 10/2017, Volume 16, Issue 5, pp. 976 - 987
cardiac geometry | contractile function | autophagy | aging | Akt | Life Sciences & Biomedicine | Geriatrics & Gerontology | Science & Technology | Cell Biology | Adaptation, Physiological | Protein Kinases - metabolism | Sirtuin 1 - metabolism | Phosphorylation | Protein Kinases - genetics | Microtubule-Associated Proteins - genetics | Calcium - metabolism | Microtubule-Associated Proteins - metabolism | Autophagy-Related Protein 7 - metabolism | Proto-Oncogene Proteins c-akt - deficiency | Atrial Remodeling - drug effects | Myocardial Contraction - drug effects | Cardiomegaly - pathology | Male | Mitochondrial Proteins - genetics | Sirtuin 1 - genetics | Autophagy - drug effects | Heterocyclic Compounds, 4 or More Rings - pharmacology | Proto-Oncogene Proteins c-akt - genetics | Mitochondrial Proteins - metabolism | Myocardium - metabolism | Membrane Proteins - metabolism | Autophagy - genetics | Forkhead Box Protein O1 - metabolism | Sarcoplasmic Reticulum Calcium-Transporting ATPases - metabolism | Signal Transduction | Membrane Proteins - genetics | Gene Expression Regulation | Myocardium - pathology | Mitochondria - metabolism | Longevity - genetics | Mitochondria - pathology | Autophagy-Related Protein 7 - genetics | Sirolimus - pharmacology | Mice, Knockout | Animals | Cardiomegaly - prevention & control | Beclin-1 - genetics | Mice | Beclin-1 - metabolism | Cardiomegaly - genetics | Sarcoplasmic Reticulum Calcium-Transporting ATPases - genetics | Forkhead Box Protein O1 - genetics | Cardiomegaly - metabolism | Heart | Laws, regulations and rules | Ablation (Surgery) | AKT protein | Autophagy | Ca2+-transporting ATPase | Mitochondria | FOXO1 protein | Aging | Oxidation | Fura-2 | Acetylation | Heart diseases | Calcium (intracellular) | Echocardiography | AKT2 protein | Cardiomyocytes | Rapamycin | Insulin | Muscle contraction | BNIP3 protein | Life span | PTEN-induced putative kinase | Parkin protein | Intracellular | PTEN protein | Phagocytosis | Hypertrophy | Index Medicus | Original
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8. Full Text The Noncanonical Role of ULK/ATG1 in ER-to-Golgi Trafficking Is Essential for Cellular Homeostasis
by Joo, Joung Hyuck and Wang, Bo and Frankel, Elisa and Ge, Liang and Xu, Lu and Iyengar, Rekha and Li-Harms, XiuJie and Wright, Christopher and Shaw, Timothy I and Lindsten, Tullia and Green, Douglas R and Peng, Junmin and Hendershot, Linda M and Kilic, Fusun and Sze, Ji Ying and Audhya, Anjon and Kundu, Mondira
Molecular cell, ISSN 1097-2765, 05/2016, Volume 62, Issue 4, pp. 491 - 506
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Golgi Apparatus - enzymology | Protein-Serine-Threonine Kinases - deficiency | Fibroblasts - enzymology | Phosphorylation | Vesicular Transport Proteins - metabolism | Autophagy-Related Protein 7 - metabolism | Humans | Brain - enzymology | Caenorhabditis elegans Proteins - metabolism | Homeostasis | Male | Autophagy-Related Protein-1 Homolog - metabolism | Golgi Apparatus - pathology | Mice, 129 Strain | Autophagy | Endoplasmic Reticulum - pathology | Transfection | RNA Interference | Time Factors | HEK293 Cells | Female | Nuclear Proteins - genetics | Protein-Serine-Threonine Kinases - metabolism | Endoplasmic Reticulum - enzymology | Caenorhabditis elegans - genetics | Mice, Inbred C57BL | Vesicular Transport Proteins - genetics | Protein-Serine-Threonine Kinases - genetics | Genotype | Nuclear Proteins - metabolism | Unfolded Protein Response | Autophagy-Related Protein 7 - genetics | Mice, Knockout | Protein Transport | Carrier Proteins - genetics | Phenotype | Animals | Autophagy-Related Protein-1 Homolog - deficiency | COP-Coated Vesicles - enzymology | Carrier Proteins - metabolism | Brain - pathology | Nerve Degeneration | Autophagy-Related Protein-1 Homolog - genetics | Caenorhabditis elegans - enzymology | Proteins | Neurons | Phosphoproteins | Cells | Index Medicus
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9. Full Text The diverse roles of RIP kinases in host-pathogen interactions
by Eng, Vik Ven and Wemyss, Madeleine A and Pearson, Jaclyn S
Seminars in cell & developmental biology, ISSN 1084-9521, 01/2021, Volume 109, pp. 125 - 143
Bacterial infection | RIP kinase | Inflammation | Pathogen | Cell death | Viral infection | Ubiquitin | Phosphates | Parkinson's disease | RNA | Microbiology | Dengue viruses | Biological response modifiers | HIV (Viruses) | Epidemiology | Oligomers | Hepatitis | West Nile fever | Cellular signal transduction | Epstein-Barr virus | Protein kinases | Coxsackievirus infections | Protein binding | Medical research | Nervous system diseases | Bacterial infections | Chromosomal proteins | Severe acute respiratory syndrome | Melanoma | Coronaviruses | Transforming growth factors | Proteases | Analysis | Nitric oxide | Medicine, Experimental | Interferon | Mitogens | Papillomavirus infections | Index Medicus
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