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eLife, ISSN 2050-084X, 11/2016, Volume 5, Issue 2016
Selective autophagy is mediated by cargo receptors that link the cargo to the isolation membrane via interactions with Atg8 proteins... 
MOLECULAR-DYNAMICS | ATG12-ATG5 CONJUGATE | SWISS-MODEL WORKSPACE | STRUCTURAL BASIS | MEMBRANE | IN-VIVO | BIOLOGY | SCAFFOLD PROTEIN | UBIQUITIN-LIKE PROTEINS | SACCHAROMYCES-CEREVISIAE | LIPIDATION | Saccharomyces cerevisiae - genetics | Vesicular Transport Proteins - metabolism | Humans | Transcription Factor TFIIIA - genetics | Autophagy-Related Protein 5 - chemistry | Autophagy-Related Protein 5 - genetics | Autophagy-Related Protein 8 Family - metabolism | Transcription Factor TFIIIA - metabolism | Autophagy-Related Proteins - chemistry | Saccharomyces cerevisiae - metabolism | Biological Transport | Cloning, Molecular | Escherichia coli - metabolism | Protein Interaction Domains and Motifs | Autophagy - genetics | Autophagy-Related Protein 8 Family - genetics | Nuclear Proteins - genetics | Autophagy-Related Proteins - genetics | Binding Sites | Sequestosome-1 Protein - metabolism | Recombinant Proteins - metabolism | Amino Acid Sequence | Autophagy-Related Protein 12 - genetics | Protein Structure, Secondary | Signal Transduction | Vesicular Transport Proteins - genetics | Gene Expression Regulation | Receptors, Cell Surface - metabolism | Recombinant Proteins - chemistry | Nuclear Proteins - metabolism | Receptors, Cytoplasmic and Nuclear - genetics | Recombinant Proteins - genetics | Autophagy-Related Protein 8 Family - chemistry | Saccharomyces cerevisiae Proteins - genetics | Autophagy-Related Protein 12 - metabolism | Sequestosome-1 Protein - genetics | Escherichia coli - genetics | Saccharomyces cerevisiae Proteins - metabolism | Autophagy-Related Protein 5 - metabolism | Protein Binding | Molecular Docking Simulation | HeLa Cells | Autophagy-Related Proteins - metabolism | Receptors, Cell Surface - genetics | Receptors, Cytoplasmic and Nuclear - metabolism | Saccharomyces cerevisiae Proteins - chemistry | Observations | Autophagy (Cytology) | Ubiquitin | Proteins | Enzymes | Membranes | Peptides | Laboratories | Kinases | Autophagy | Phagocytosis | Binding sites | Recruitment
Journal Article
Experimental & molecular medicine, ISSN 2092-6413, 2012, Volume 44, Issue 2, pp. 73 - 80
...  EXPERIMENTAL and MOLECULAR MEDICINE, Vol. 44, No. 2, 73-80, February 2012 Molecules and their functions in autophagy ATG16L1 protein, human; autophagy; class... 
Class III phosphatidylinositol 3-kinases | Human | ATG16L1 protein | MTOR protein | ATG9B protein | ULK1 protein | ATG12 protein | ATG2 protein | ATG5 protein | Autophagy | MEDICINE, RESEARCH & EXPERIMENTAL | SIGNALING PATHWAYS | COMPLEX | ATG2 protein, human | autophagy | BECLIN 1 | ATG5 protein, human | BIOCHEMISTRY & MOLECULAR BIOLOGY | REGULATES AUTOPHAGY | MACHINERY | ULK1 protein, human | MECHANISMS | MACROAUTOPHAGY | ESCRT PROTEINS | MTOR protein, human | YEAST | class III phosphatidylinositol 3-kinases | ATG12 protein, human | ATG9B protein, human | ATG16L1 protein, human | SYNTAXIN HOMOLOG | Autophagy-Related Protein 12 | Autophagy-Related Proteins | Microtubule-Associated Proteins - genetics | Membrane Proteins - genetics | Microtubule-Associated Proteins - metabolism | Small Ubiquitin-Related Modifier Proteins - metabolism | Humans | Protein-Serine-Threonine Kinases - genetics | Class III Phosphatidylinositol 3-Kinases - metabolism | Autophagy - physiology | Intracellular Signaling Peptides and Proteins - metabolism | Autophagy-Related Protein-1 Homolog | Small Ubiquitin-Related Modifier Proteins - genetics | Carrier Proteins - genetics | Carrier Proteins - metabolism | Autophagy-Related Protein 5 | Class III Phosphatidylinositol 3-Kinases - genetics | Models, Biological | Membrane Proteins - metabolism | Autophagy - genetics | Intracellular Signaling Peptides and Proteins - genetics | Protein-Serine-Threonine Kinases - metabolism | Review | 생화학
Journal Article
The Journal of clinical investigation, ISSN 1558-8238, 2018, Volume 128, Issue 9, pp. 3941 - 3956
The t-SNARE protein SNAP23 conventionally functions as a component of the cellular machinery required for intracellular transport vesicle fusion with target membranes and has been... 
MEMBRANE-FUSION | 3T3-L1 ADIPOCYTES | MEDICINE, RESEARCH & EXPERIMENTAL | RECYCLING ENDOSOMES | GLUT4 TRANSLOCATION | INSULIN-RESISTANCE | TRANS-GOLGI NETWORK | CONGENITAL GENERALIZED LIPODYSTROPHY | AUTOPHAGOSOME BIOGENESIS | LIPID DROPLETS | PTRF MUTATIONS | Vesicular Transport Proteins - metabolism | Autophagy-Related Protein 7 - metabolism | Qb-SNARE Proteins - metabolism | Qb-SNARE Proteins - genetics | Adipocytes - cytology | Male | Autophagy - physiology | Membrane Proteins - deficiency | Qb-SNARE Proteins - deficiency | Qc-SNARE Proteins - metabolism | Proteolysis | Membrane Proteins - metabolism | bcl-2-Associated X Protein - deficiency | Autophagy-Related Proteins - genetics | bcl-2-Associated X Protein - genetics | Autophagy-Related Proteins - deficiency | Membrane Proteins - genetics | Vesicular Transport Proteins - genetics | bcl-2-Associated X Protein - metabolism | Lipodystrophy - metabolism | 3T3-L1 Cells | Autophagy-Related Protein 7 - genetics | Qc-SNARE Proteins - deficiency | Mice, Knockout | Animals | Vesicular Transport Proteins - deficiency | Adipocytes - metabolism | Lipodystrophy - pathology | Qc-SNARE Proteins - genetics | Mice | Apoptosis - physiology | Autophagy-Related Proteins - metabolism | Autophagy-Related Protein 7 - deficiency | Physiological aspects | Autophagy (Cytology) | Apoptotic proteins | Fat cells | Health aspects | Membrane proteins | Membranes | Adipose tissue | Bax protein | Liver | Lysosomes | SNAP receptors | Biosynthesis | Adipocytes | Vesicle fusion | Glucose | Autophagy | Proteins | Hyperglycemia | Cell activation | Fatty liver | Rodents | Diabetes mellitus (non-insulin dependent) | Phenotypes | Diabetes mellitus | Inflammation | Insulin | Steatosis | Cell death | Insulin resistance | Lipodystrophy | Mutation | Vacuoles | Apoptosis
Journal Article
EMBO reports, ISSN 1469-3178, 2009, Volume 11, Issue 1, pp. 45 - 51
.... Recent evidence indicates that autophagy mediates selective removal of protein aggregates, organelles and microbes in cells... 
mitophagy | Nix | LC3 | GABARAP | selective autophagy | Selective autophagy | Mitophagy | APOPTOSIS | PROTEIN | RETICULOCYTE MATURATION | UBIQUITIN | BNIP3 | BIOCHEMISTRY & MOLECULAR BIOLOGY | E3 | CELL-DEATH | CELL BIOLOGY | STRUCTURAL BASIS | DEGRADATION | Microtubule-Associated Proteins - genetics | Microtubule-Associated Proteins - metabolism | Humans | Cercopithecus aethiops | Molecular Sequence Data | Substrate Specificity | Autophagy - physiology | Mitochondrial Proteins - genetics | Proto-Oncogene Proteins - chemistry | Mitochondrial Proteins - metabolism | Tumor Suppressor Proteins - chemistry | Tumor Suppressor Proteins - genetics | Membrane Proteins - metabolism | Binding Sites | Proto-Oncogene Proteins - metabolism | Amino Acid Sequence | Tumor Suppressor Proteins - metabolism | Membrane Proteins - genetics | Cells, Cultured | Ubiquitin-Protein Ligases - metabolism | Proto-Oncogene Proteins - genetics | Mitochondria - metabolism | Saccharomyces cerevisiae Proteins - genetics | Blotting, Western | Amino Acid Motifs | Autophagy-Related Protein 8 Family | Animals | Membrane Proteins - chemistry | Reticulocytes - cytology | Mitochondrial Proteins - chemistry | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Mice | Receptors, GABA-A - metabolism | COS Cells | Proteins | Mitochondria | Cellular biology | Cytoplasm | Scientific Report
Journal Article
Structure (London), ISSN 0969-2126, 2015, Volume 23, Issue 10, pp. 1848 - 1857
The ULK1 complex, consisting of the ULK1 protein kinase itself, FIP200, Atg13, and Atg101, controls the initiation of autophagy in animals... 
protein structure | hydrogen-deuterium exchange | X-ray crystallography | Atg1 | autophagy | DOMAIN | PROTEIN | MECHANISM | CRYSTAL-STRUCTURE | BIOCHEMISTRY & MOLECULAR BIOLOGY | AUTOPHAGY | IDENTIFICATION | CELL BIOLOGY | BIOPHYSICS | ROLES | ARCHITECTURE | KINASE ULK1 | BINDING | Adaptor Proteins, Signal Transducing - chemistry | Autophagy-Related Proteins | Mad2 Proteins - metabolism | Vesicular Transport Proteins - metabolism | Humans | Protein Multimerization | Molecular Sequence Data | Crystallography, X-Ray | Intracellular Signaling Peptides and Proteins - metabolism | Autophagy-Related Protein-1 Homolog | Spodoptera | Schizosaccharomyces - genetics | Sf9 Cells | Autophagy - genetics | Binding Sites | Intracellular Signaling Peptides and Proteins - genetics | Protein-Serine-Threonine Kinases - metabolism | Protein Structure, Tertiary | Recombinant Proteins - metabolism | Amino Acid Sequence | Gene Expression | Protein Structure, Secondary | Vesicular Transport Proteins - genetics | Protein-Serine-Threonine Kinases - genetics | Models, Molecular | Recombinant Proteins - chemistry | Vesicular Transport Proteins - chemistry | Mad2 Proteins - chemistry | Recombinant Proteins - genetics | Benzamidines - chemistry | Schizosaccharomyces - metabolism | Sequence Alignment | Animals | Intracellular Signaling Peptides and Proteins - chemistry | Adaptor Proteins, Signal Transducing - genetics | Mad2 Proteins - genetics | Hydrophobic and Hydrophilic Interactions | Protein Binding | Protein-Serine-Threonine Kinases - chemistry | Mutation | Adaptor Proteins, Signal Transducing - metabolism | Proteins | Cells | Hydrogen | Protein kinases
Journal Article
PLoS ONE, ISSN 1932-6203, 04/2017, Volume 12, Issue 4, p. e0173676
.... Chronic administration of the PPARa agonist FB substantially reduced the levels of multiple autophagy proteins in the liver... 
INSULIN SIGNALING TRANSDUCTION | GLUCOSE-HOMEOSTASIS | FIBROBLAST-GROWTH-FACTOR-21 | DEACETYLATION | METABOLISM | PATHWAY | STEATOSIS | MULTIDISCIPLINARY SCIENCES | RESISTANCE | RECEPTORS | FOXO1 | TOR Serine-Threonine Kinases - metabolism | Autophagy-Related Protein 7 - metabolism | Fibroblast Growth Factors - genetics | Autophagy-Related Protein 5 - genetics | fas Receptor - metabolism | Autophagy - drug effects | Fibroblast Growth Factors - metabolism | TOR Serine-Threonine Kinases - genetics | Liver - drug effects | fas Receptor - genetics | Autophagy - genetics | Proto-Oncogene Proteins c-akt - metabolism | Forkhead Box Protein O1 - metabolism | Signal Transduction | Liver - metabolism | PPAR alpha - genetics | Ubiquitin-Conjugating Enzymes - genetics | Stearoyl-CoA Desaturase - genetics | Mice, Knockout | Triglycerides - metabolism | Sequestosome-1 Protein - genetics | Ubiquitin-Conjugating Enzymes - metabolism | Cysteine Endopeptidases - genetics | Autophagy-Related Protein 5 - metabolism | Beclin-1 - genetics | Stearoyl-CoA Desaturase - metabolism | Mice | PPAR alpha - metabolism | Autophagy-Related Proteins - antagonists & inhibitors | Blood Glucose - metabolism | Autophagy-Related Proteins - metabolism | Forkhead Box Protein O1 - genetics | Autophagy-Related Protein 5 - antagonists & inhibitors | Microtubule-Associated Proteins - genetics | Microtubule-Associated Proteins - metabolism | Proto-Oncogene Proteins c-akt - genetics | Fenofibrate - pharmacology | Cysteine Endopeptidases - metabolism | Autophagy-Related Proteins - genetics | Sequestosome-1 Protein - metabolism | Sterol Regulatory Element Binding Protein 1 - metabolism | Autophagy-Related Protein 7 - antagonists & inhibitors | Mice, Inbred C57BL | Autophagy-Related Protein 7 - genetics | Gene Expression Regulation - drug effects | Animals | Sterol Regulatory Element Binding Protein 1 - genetics | PPAR alpha - agonists | Ubiquitin-Conjugating Enzymes - antagonists & inhibitors | Beclin-1 - metabolism | Transcription factors | Adipose tissue | Liver | Body weight | AKT protein | Biochemistry | Glucose | Assaying | Proteins | Signal transduction | Temperature effects | Fibroblasts | Physiology | Acetylation | Inhibition | Growth factors | Hepatotoxicity | Activation analysis | Methanol | Starvation | Ethanol | AMP | Metabolism | Insulin | Fatty acids | Studies | Acetaminophen | Food intake | Weight reduction | Animal welfare | Circulation | Drugs | Biotechnology | Drug abuse | Laboratories | Centrifugation | Glass | Homeostasis | Activation | Biology | Kinases | AMP-activated protein kinase | Autophagy | Nutrient status | Rodents | Nutrients | Oxidation | Heart diseases | Age | Epinephrine | AKT1 protein | Fasting | Chloroform | Diabetes mellitus | Cardiomyocytes | Acclimatization | Triglycerides | Pharmacology | Nitrogen | Calories | Medicine | Nuclear fuels | Protein kinase | Insulin resistance | Diabetes
Journal Article
eLife, ISSN 2050-084X, 2014, Volume 3, p. e01612
... mitochondria remains unclear. In this study, we demonstrate that TBC1D15, a mitochondrial Rab GTPase-activating protein (Rab-GAP... 
Fis1 | rab7 | autophagy | TBC1D15 | Drp1 | Parkin | PARKIN | FIS1 | RECRUITMENT | GTPASE-ACTIVATING PROTEINS | MEMBRANE | PEROXISOMAL FISSION | P62/SQSTM1 | BIOLOGY | DEGRADATION | MAMMALIAN-CELLS | SELECTIVE AUTOPHAGY | Mitochondria - enzymology | Microtubule-Associated Proteins - genetics | Microtubule-Associated Proteins - metabolism | Humans | Protein Multimerization | rab GTP-Binding Proteins - genetics | Mitochondrial Proteins - genetics | GTPase-Activating Proteins - metabolism | Autophagy | Microtubules - metabolism | Ubiquitination | Lysosomes - metabolism | Transfection | Time Factors | Mitochondrial Proteins - metabolism | HEK293 Cells | Lysosomes - pathology | Membrane Proteins - metabolism | Microfilament Proteins - metabolism | Microfilament Proteins - genetics | rab GTP-Binding Proteins - metabolism | Signal Transduction | Membrane Proteins - genetics | HCT116 Cells | Ubiquitin-Protein Ligases - metabolism | Mitochondria - pathology | Mitochondrial Degradation | Autophagy-Related Protein 8 Family | Adaptor Proteins, Signal Transducing - genetics | Protein Binding | GTPase-Activating Proteins - genetics | HeLa Cells | Adaptor Proteins, Signal Transducing - metabolism | Ubiquitin-Protein Ligases - genetics | Membranes | Yeast | Cloning | Glycerol | Mammals | Morphogenesis | Proteins | Mitochondria | GTPase-activating protein | Microscopy | PTEN-induced putative kinase | Morphology | Parkin protein | GABARAP protein | Guanosinetriphosphatase
Journal Article
Biogerontology (Dordrecht), ISSN 1389-5729, 06/2013, Volume 14, Issue 3, pp. 303 - 23
... protein turnover in skeletal muscle, consisting of the insulin-like growth factor 1 (IGF1), the kinase Akt and its downstream effectors, the mammalian target of rapamycin... 
Forkhead Transcription Factors/physiology | Serpin E2/genetics | Humans | Male | Microtubule-Associated Proteins/genetics | Signal Transduction/physiology | Tripartite Motif Proteins | Young Adult | Aging/physiology | TOR Serine-Threonine Kinases/physiology | Aged, 80 and over | Adult | Female | Mice, Inbred DBA | Models, Animal | Insulin-Like Growth Factor I/physiology | Muscle Proteins/genetics | Mice, Inbred C57BL | Proto-Oncogene Proteins c-akt/physiology | Mice, Transgenic | SKP Cullin F-Box Protein Ligases/genetics | Mice, Knockout | Autophagy-Related Protein 7 | Animals | Sarcopenia/physiopathology | Adolescent | Aged | Forkhead Box Protein O1 | Mice | Muscle, Skeletal/physiology | Ubiquitin-Protein Ligases/genetics | Life Sciences | Sarcopenia | FoxO | Geriatrics/Gerontology | Ageing | mTOR | IGF1 | Akt | Developmental Biology | Cell Biology | LIFE-SPAN | IGF-I | ALPHA-V-BETA-3 INTEGRIN | PLASMINOGEN-ACTIVATOR INHIBITOR-1 | GERIATRICS & GERONTOLOGY | GROWTH-HORMONE | MESSENGER-RNA | GENETIC-DETERMINANTS | FAST-TWITCH | CELL-CYCLE | S6 KINASE | Microtubule-Associated Proteins - genetics | SKP Cullin F-Box Protein Ligases - genetics | SKP Cullin F-Box Protein Ligases - physiology | Forkhead Transcription Factors - physiology | Ubiquitin-Protein Ligases - physiology | TOR Serine-Threonine Kinases - physiology | Muscle Proteins - physiology | Serpin E2 - physiology | Proto-Oncogene Proteins c-akt - physiology | Muscle, Skeletal - physiology | Microtubule-Associated Proteins - physiology | Muscle Proteins - genetics | Sarcopenia - physiopathology | Serpin E2 - genetics | Aging - physiology | Insulin-Like Growth Factor I - physiology | Signal Transduction - physiology | Ubiquitin-Protein Ligases - genetics | Ubiquitin | Muscles | Ligases | Proteolysis | Analysis | SKP Cullin F-Box Protein Ligases | Muscle Proteins | Aging | Serpin E2 | Signal Transduction | Biochemistry, Molecular Biology | Microtubule-Associated Proteins | Insulin-Like Growth Factor I | Proto-Oncogene Proteins c-akt | Ubiquitin-Protein Ligases | TOR Serine-Threonine Kinases | Muscle, Skeletal | Forkhead Transcription Factors
Journal Article
Developmental cell, ISSN 1534-5807, 2016, Volume 38, Issue 1, pp. 86 - 99
Journal Article
Proceedings of the National Academy of Sciences - PNAS, ISSN 0027-8424, 6/2013, Volume 110, Issue 24, pp. 9800 - 9805
When macroautophagy, a catabolic process that rids the cells of unwanted proteins, is initiated, 30-60 nm Atg9 vesicles move from the Golgi to the preautophagosomal structure (PAS... 
Proteins | Spheroplasts | Yeasts | Gels | Biological transport | Antibodies | HeLa cells | Physiological regulation | Nitrogen | Goods and services tax | Membrane tethering | GEF | PRE-AUTOPHAGOSOMAL STRUCTURE | COMPLEX | VESICLES | PROTEIN-KINASE | MEMBRANE | MULTIDISCIPLINARY SCIENCES | membrane tethering | GOLGI | INDUCTION | ORGANIZATION | TRAPPII | MUTANTS | Protein Kinases - metabolism | NIH 3T3 Cells | Autophagy-Related Proteins | Protein Kinases - genetics | Saccharomyces cerevisiae - genetics | Vesicular Transport Proteins - metabolism | Humans | Cercopithecus aethiops | Immunoblotting | rab GTP-Binding Proteins - genetics | Green Fluorescent Proteins - genetics | Intracellular Signaling Peptides and Proteins - metabolism | Autophagy | Autophagy-Related Protein-1 Homolog | Saccharomyces cerevisiae - metabolism | Guanine Nucleotide Exchange Factors - metabolism | Membrane Proteins - metabolism | Intracellular Signaling Peptides and Proteins - genetics | Protein-Serine-Threonine Kinases - metabolism | rab GTP-Binding Proteins - metabolism | Green Fluorescent Proteins - metabolism | Guanine Nucleotide Exchange Factors - genetics | rab1 GTP-Binding Proteins - metabolism | Membrane Proteins - genetics | Phagosomes - metabolism | Vesicular Transport Proteins - genetics | Protein-Serine-Threonine Kinases - genetics | Saccharomyces cerevisiae Proteins - genetics | rab1 GTP-Binding Proteins - genetics | Carrier Proteins - genetics | Animals | Carrier Proteins - metabolism | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Golgi Apparatus - metabolism | Mice | HeLa Cells | COS Cells | Microscopy, Fluorescence | Autophagy (Cytology) | Research | Properties | Phosphotransferases | Golgi apparatus | Biological Sciences
Journal Article