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eLife, ISSN 2050-084X, 11/2016, Volume 5, Issue 2016
Selective autophagy is mediated by cargo receptors that link the cargo to the isolation membrane via interactions with Atg8 proteins... 
MOLECULAR-DYNAMICS | ATG12-ATG5 CONJUGATE | SWISS-MODEL WORKSPACE | STRUCTURAL BASIS | MEMBRANE | IN-VIVO | BIOLOGY | SCAFFOLD PROTEIN | UBIQUITIN-LIKE PROTEINS | SACCHAROMYCES-CEREVISIAE | LIPIDATION | Saccharomyces cerevisiae - genetics | Vesicular Transport Proteins - metabolism | Humans | Transcription Factor TFIIIA - genetics | Autophagy-Related Protein 5 - chemistry | Autophagy-Related Protein 5 - genetics | Autophagy-Related Protein 8 Family - metabolism | Transcription Factor TFIIIA - metabolism | Autophagy-Related Proteins - chemistry | Saccharomyces cerevisiae - metabolism | Biological Transport | Cloning, Molecular | Escherichia coli - metabolism | Protein Interaction Domains and Motifs | Autophagy - genetics | Autophagy-Related Protein 8 Family - genetics | Nuclear Proteins - genetics | Autophagy-Related Proteins - genetics | Binding Sites | Sequestosome-1 Protein - metabolism | Recombinant Proteins - metabolism | Amino Acid Sequence | Autophagy-Related Protein 12 - genetics | Protein Structure, Secondary | Signal Transduction | Vesicular Transport Proteins - genetics | Gene Expression Regulation | Receptors, Cell Surface - metabolism | Recombinant Proteins - chemistry | Nuclear Proteins - metabolism | Receptors, Cytoplasmic and Nuclear - genetics | Recombinant Proteins - genetics | Autophagy-Related Protein 8 Family - chemistry | Saccharomyces cerevisiae Proteins - genetics | Autophagy-Related Protein 12 - metabolism | Sequestosome-1 Protein - genetics | Escherichia coli - genetics | Saccharomyces cerevisiae Proteins - metabolism | Autophagy-Related Protein 5 - metabolism | Protein Binding | Molecular Docking Simulation | HeLa Cells | Autophagy-Related Proteins - metabolism | Receptors, Cell Surface - genetics | Receptors, Cytoplasmic and Nuclear - metabolism | Saccharomyces cerevisiae Proteins - chemistry | Observations | Autophagy (Cytology) | Ubiquitin | Proteins | Enzymes | Membranes | Peptides | Laboratories | Kinases | Autophagy | Phagocytosis | Binding sites | Recruitment
Journal Article
PLoS ONE, ISSN 1932-6203, 04/2017, Volume 12, Issue 4, p. e0173676
.... Chronic administration of the PPARa agonist FB substantially reduced the levels of multiple autophagy proteins in the liver... 
INSULIN SIGNALING TRANSDUCTION | GLUCOSE-HOMEOSTASIS | FIBROBLAST-GROWTH-FACTOR-21 | DEACETYLATION | METABOLISM | PATHWAY | STEATOSIS | MULTIDISCIPLINARY SCIENCES | RESISTANCE | RECEPTORS | FOXO1 | TOR Serine-Threonine Kinases - metabolism | Autophagy-Related Protein 7 - metabolism | Fibroblast Growth Factors - genetics | Autophagy-Related Protein 5 - genetics | fas Receptor - metabolism | Autophagy - drug effects | Fibroblast Growth Factors - metabolism | TOR Serine-Threonine Kinases - genetics | Liver - drug effects | fas Receptor - genetics | Autophagy - genetics | Proto-Oncogene Proteins c-akt - metabolism | Forkhead Box Protein O1 - metabolism | Signal Transduction | Liver - metabolism | PPAR alpha - genetics | Ubiquitin-Conjugating Enzymes - genetics | Stearoyl-CoA Desaturase - genetics | Mice, Knockout | Triglycerides - metabolism | Sequestosome-1 Protein - genetics | Ubiquitin-Conjugating Enzymes - metabolism | Cysteine Endopeptidases - genetics | Autophagy-Related Protein 5 - metabolism | Beclin-1 - genetics | Stearoyl-CoA Desaturase - metabolism | Mice | PPAR alpha - metabolism | Autophagy-Related Proteins - antagonists & inhibitors | Blood Glucose - metabolism | Autophagy-Related Proteins - metabolism | Forkhead Box Protein O1 - genetics | Autophagy-Related Protein 5 - antagonists & inhibitors | Microtubule-Associated Proteins - genetics | Microtubule-Associated Proteins - metabolism | Proto-Oncogene Proteins c-akt - genetics | Fenofibrate - pharmacology | Cysteine Endopeptidases - metabolism | Autophagy-Related Proteins - genetics | Sequestosome-1 Protein - metabolism | Sterol Regulatory Element Binding Protein 1 - metabolism | Autophagy-Related Protein 7 - antagonists & inhibitors | Mice, Inbred C57BL | Autophagy-Related Protein 7 - genetics | Gene Expression Regulation - drug effects | Animals | Sterol Regulatory Element Binding Protein 1 - genetics | PPAR alpha - agonists | Ubiquitin-Conjugating Enzymes - antagonists & inhibitors | Beclin-1 - metabolism | Transcription factors | Adipose tissue | Liver | Body weight | AKT protein | Biochemistry | Glucose | Assaying | Proteins | Signal transduction | Temperature effects | Fibroblasts | Physiology | Acetylation | Inhibition | Growth factors | Hepatotoxicity | Activation analysis | Methanol | Starvation | Ethanol | AMP | Metabolism | Insulin | Fatty acids | Studies | Acetaminophen | Food intake | Weight reduction | Animal welfare | Circulation | Drugs | Biotechnology | Drug abuse | Laboratories | Centrifugation | Glass | Homeostasis | Activation | Biology | Kinases | AMP-activated protein kinase | Autophagy | Nutrient status | Rodents | Nutrients | Oxidation | Heart diseases | Age | Epinephrine | AKT1 protein | Fasting | Chloroform | Diabetes mellitus | Cardiomyocytes | Acclimatization | Triglycerides | Pharmacology | Nitrogen | Calories | Medicine | Nuclear fuels | Protein kinase | Insulin resistance | Diabetes
Journal Article
Proceedings of the National Academy of Sciences - PNAS, ISSN 0027-8424, 6/2013, Volume 110, Issue 24, pp. 9800 - 9805
When macroautophagy, a catabolic process that rids the cells of unwanted proteins, is initiated, 30-60 nm Atg9 vesicles move from the Golgi to the preautophagosomal structure (PAS... 
Proteins | Spheroplasts | Yeasts | Gels | Biological transport | Antibodies | HeLa cells | Physiological regulation | Nitrogen | Goods and services tax | Membrane tethering | GEF | PRE-AUTOPHAGOSOMAL STRUCTURE | COMPLEX | VESICLES | PROTEIN-KINASE | MEMBRANE | MULTIDISCIPLINARY SCIENCES | membrane tethering | GOLGI | INDUCTION | ORGANIZATION | TRAPPII | MUTANTS | Protein Kinases - metabolism | NIH 3T3 Cells | Autophagy-Related Proteins | Protein Kinases - genetics | Saccharomyces cerevisiae - genetics | Vesicular Transport Proteins - metabolism | Humans | Cercopithecus aethiops | Immunoblotting | rab GTP-Binding Proteins - genetics | Green Fluorescent Proteins - genetics | Intracellular Signaling Peptides and Proteins - metabolism | Autophagy | Autophagy-Related Protein-1 Homolog | Saccharomyces cerevisiae - metabolism | Guanine Nucleotide Exchange Factors - metabolism | Membrane Proteins - metabolism | Intracellular Signaling Peptides and Proteins - genetics | Protein-Serine-Threonine Kinases - metabolism | rab GTP-Binding Proteins - metabolism | Green Fluorescent Proteins - metabolism | Guanine Nucleotide Exchange Factors - genetics | rab1 GTP-Binding Proteins - metabolism | Membrane Proteins - genetics | Phagosomes - metabolism | Vesicular Transport Proteins - genetics | Protein-Serine-Threonine Kinases - genetics | Saccharomyces cerevisiae Proteins - genetics | rab1 GTP-Binding Proteins - genetics | Carrier Proteins - genetics | Animals | Carrier Proteins - metabolism | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Golgi Apparatus - metabolism | Mice | HeLa Cells | COS Cells | Microscopy, Fluorescence | Autophagy (Cytology) | Research | Properties | Phosphotransferases | Golgi apparatus | Biological Sciences
Journal Article
Experimental & molecular medicine, ISSN 2092-6413, 2012, Volume 44, Issue 2, pp. 73 - 80
.... Over the last 15 yr, yeast genetic screens led to the identification of a number of genes involved in the autophagic pathway... 
Class III phosphatidylinositol 3-kinases | Human | ATG16L1 protein | MTOR protein | ATG9B protein | ULK1 protein | ATG12 protein | ATG2 protein | ATG5 protein | Autophagy | MEDICINE, RESEARCH & EXPERIMENTAL | SIGNALING PATHWAYS | COMPLEX | ATG2 protein, human | autophagy | BECLIN 1 | ATG5 protein, human | BIOCHEMISTRY & MOLECULAR BIOLOGY | REGULATES AUTOPHAGY | MACHINERY | ULK1 protein, human | MECHANISMS | MACROAUTOPHAGY | ESCRT PROTEINS | MTOR protein, human | YEAST | class III phosphatidylinositol 3-kinases | ATG12 protein, human | ATG9B protein, human | ATG16L1 protein, human | SYNTAXIN HOMOLOG | Autophagy-Related Protein 12 | Autophagy-Related Proteins | Microtubule-Associated Proteins - genetics | Membrane Proteins - genetics | Microtubule-Associated Proteins - metabolism | Small Ubiquitin-Related Modifier Proteins - metabolism | Humans | Protein-Serine-Threonine Kinases - genetics | Class III Phosphatidylinositol 3-Kinases - metabolism | Autophagy - physiology | Intracellular Signaling Peptides and Proteins - metabolism | Autophagy-Related Protein-1 Homolog | Small Ubiquitin-Related Modifier Proteins - genetics | Carrier Proteins - genetics | Carrier Proteins - metabolism | Autophagy-Related Protein 5 | Class III Phosphatidylinositol 3-Kinases - genetics | Models, Biological | Membrane Proteins - metabolism | Autophagy - genetics | Intracellular Signaling Peptides and Proteins - genetics | Protein-Serine-Threonine Kinases - metabolism | Review | 생화학
Journal Article
Redox biology, ISSN 2213-2317, 2015, Volume 4, Issue C, pp. 184 - 192
Cancer formation is a complex and highly regulated multi-step process which is highly dependent of its environment, from the tissue to the patient. This... 
Mitochondria | Antioxidant | Mitophagy | Autophagy | ROS | Cancer | KAPPA-B ACTIVATION | OXIDATIVE STRESS | ACTIVATED PROTEIN-KINASE | METASTASIS | BIOCHEMISTRY & MOLECULAR BIOLOGY | MITOCHONDRIAL AUTOPHAGY | HYPOXIA | FIBROBLASTS | METABOLISM | STROMA COEVOLUTION | GROWTH | Neoplasms - metabolism | AMP-Activated Protein Kinases - metabolism | Autophagy-Related Proteins | Reactive Oxygen Species - metabolism | Humans | Gene Expression Regulation, Neoplastic | Tumor Microenvironment | Antineoplastic Agents - therapeutic use | Intracellular Signaling Peptides and Proteins - metabolism | Autophagy-Related Protein-1 Homolog | Mitochondrial Degradation - genetics | Cysteine Endopeptidases - metabolism | Neoplasms - genetics | Cell Transformation, Neoplastic - genetics | Apoptosis Regulatory Proteins - genetics | Membrane Proteins - metabolism | Autophagy - genetics | Intracellular Signaling Peptides and Proteins - genetics | Kelch-Like ECH-Associated Protein 1 | Protein-Serine-Threonine Kinases - metabolism | Beclin-1 | Signal Transduction | Membrane Proteins - genetics | Protein-Serine-Threonine Kinases - genetics | Lymphatic Metastasis | Mitochondria - metabolism | Mitochondria - pathology | Cell Transformation, Neoplastic - metabolism | Apoptosis Regulatory Proteins - metabolism | Neoplasms - drug therapy | Cysteine Endopeptidases - genetics | Cell Transformation, Neoplastic - pathology | Neoplasms - pathology | AMP-Activated Protein Kinases - genetics
Journal Article
Aging cell, ISSN 1474-9718, 2017, Volume 16, Issue 5, pp. 976 - 987
...) and its downstream‐signaling target protein kinase B (Akt) in aging‐induced pathological changes in the heart (Inuzuka et al ., ; Hua et al ., ; Pillai et al ., ). It was shown that the on‐... 
cardiac geometry | contractile function | autophagy | aging | Akt | RAPAMYCIN | PROTEIN-KINASE | DIASTOLIC DYSFUNCTION | CELL BIOLOGY | GERIATRICS & GERONTOLOGY | HYPERTROPHY | LONGEVITY | OVEREXPRESSION | INSULIN-RESISTANCE | CALORIC RESTRICTION | SENESCENCE | MITOCHONDRIAL INJURY | Adaptation, Physiological | Protein Kinases - metabolism | Sirtuin 1 - metabolism | Phosphorylation | Protein Kinases - genetics | Microtubule-Associated Proteins - genetics | Calcium - metabolism | Microtubule-Associated Proteins - metabolism | Autophagy-Related Protein 7 - metabolism | Proto-Oncogene Proteins c-akt - deficiency | Atrial Remodeling - drug effects | Myocardial Contraction - drug effects | Cardiomegaly - pathology | Male | Mitochondrial Proteins - genetics | Sirtuin 1 - genetics | Autophagy - drug effects | Heterocyclic Compounds, 4 or More Rings - pharmacology | Proto-Oncogene Proteins c-akt - genetics | Mitochondrial Proteins - metabolism | Myocardium - metabolism | Membrane Proteins - metabolism | Autophagy - genetics | Forkhead Box Protein O1 - metabolism | Sarcoplasmic Reticulum Calcium-Transporting ATPases - metabolism | Signal Transduction | Membrane Proteins - genetics | Gene Expression Regulation | Myocardium - pathology | Mitochondria - metabolism | Longevity - genetics | Mitochondria - pathology | Autophagy-Related Protein 7 - genetics | Sirolimus - pharmacology | Mice, Knockout | Animals | Cardiomegaly - prevention & control | Beclin-1 - genetics | Mice | Beclin-1 - metabolism | Cardiomegaly - genetics | Sarcoplasmic Reticulum Calcium-Transporting ATPases - genetics | Forkhead Box Protein O1 - genetics | Cardiomegaly - metabolism | Heart | Laws, regulations and rules | Ablation (Surgery) | AKT protein | Autophagy | Ca2+-transporting ATPase | Mitochondria | FOXO1 protein | Aging | Oxidation | Fura-2 | Acetylation | Heart diseases | Calcium (intracellular) | Echocardiography | AKT2 protein | Cardiomyocytes | Rapamycin | Insulin | Muscle contraction | BNIP3 protein | Life span | PTEN-induced putative kinase | Parkin protein | Intracellular | PTEN protein | Phagocytosis | Hypertrophy | Original
Journal Article
The Journal of cell biology, ISSN 1540-8140, 2015, Volume 210, Issue 3, pp. 435 - 450
The kinase PINK1 and ubiquitin ligase Parkin can regulate the selective elimination of damaged mitochondria through autophagy (mitophagy). Because of the... 
REGULATE AUTOPHAGY | FACTOR EB | PROTEIN-KINASE | MITOCHONDRIAL DEPOLARIZATION | IN-VIVO | AUTOPHAGOSOME FORMATION | ACETYL-COA CARBOXYLASE | CELLULAR CLEARANCE | P70 S6 KINASE | LYSOSOMAL BIOGENESIS | CELL BIOLOGY | Autophagy-Related Proteins | Protein Kinases - genetics | Microtubule-Associated Proteins - genetics | Microtubule-Associated Proteins - metabolism | Vesicular Transport Proteins - metabolism | Homeodomain Proteins - metabolism | Humans | rab GTP-Binding Proteins - genetics | Autophagy - physiology | Mitochondrial Proteins - genetics | Mechanistic Target of Rapamycin Complex 1 | Mitochondrial Degradation - genetics | Multiprotein Complexes - antagonists & inhibitors | TOR Serine-Threonine Kinases - antagonists & inhibitors | Lysosomes - metabolism | RNA Interference | HEK293 Cells | Membrane Proteins - metabolism | Active Transport, Cell Nucleus | Autophagy - genetics | Membrane Proteins - genetics | Phagosomes - metabolism | Ubiquitin-Protein Ligases - metabolism | Mitochondria - metabolism | Gene Knockout Techniques | Mitochondrial Degradation - physiology | 14-3-3 Proteins - metabolism | Autophagy-Related Protein 5 | Basic Helix-Loop-Helix Leucine Zipper Transcription Factors - genetics | Cell Line, Tumor | Basic Helix-Loop-Helix Leucine Zipper Transcription Factors - metabolism | RNA, Small Interfering | HeLa Cells | Ubiquitin-Protein Ligases - genetics | Microphthalmia-Associated Transcription Factor - genetics | Biosynthesis | Mitochondrial DNA | DNA binding proteins | Analysis
Journal Article
Biochemical Journal, ISSN 0264-6021, 07/2014, Volume 461, Issue 2, pp. 315 - 322
... (vacuolar protein sorting 34). The autophagic functions of Vps34 require its recruitment to a complex that includes Vps15, Beclin-1 and Atg14L... 
Nuclear receptor-binding factor 2 (NRBF2) | Vacuolar protein sorting 34 (Vps34) | Autophagy | Macroautophagy | Mass spectrometry | Human vacuolar protein sorting 34 (hVps34) | Vacuolar protein sorting 15 (Vps15) | human vacuolar protein sorting 34 (hVps34) | ACTIVATION | autophagy | RAB5 | 3-KINASE | macroautophagy | BIOCHEMISTRY & MOLECULAR BIOLOGY | vacuolar protein sorting 15 (Vps15) | vacuolar protein sorting 34 (Vps34) | nuclear receptor-binding factor 2 (NRBF2) | HVPS34 | PATHOGENESIS | ROLES | mass spectrometry | ULK1 | RNA, Small Interfering - genetics | Autophagy-Related Proteins | Microtubule-Associated Proteins - genetics | Microtubule-Associated Proteins - metabolism | Humans | Adaptor Proteins, Vesicular Transport - genetics | Green Fluorescent Proteins - genetics | Mitochondrial Proteins - genetics | Adaptor Proteins, Vesicular Transport - metabolism | Lysosomes - metabolism | Mitochondrial Proteins - metabolism | Tumor Suppressor Proteins - genetics | HEK293 Cells | Trans-Activators - genetics | Apoptosis Regulatory Proteins - genetics | Membrane Proteins - metabolism | Autophagy - genetics | Genes, Reporter | Beclin-1 | Green Fluorescent Proteins - metabolism | Tumor Suppressor Proteins - metabolism | Vacuolar Sorting Protein VPS15 - genetics | Signal Transduction | Membrane Proteins - genetics | Phagosomes - metabolism | Gene Expression Regulation | Class III Phosphatidylinositol 3-Kinases - metabolism | HSP70 Heat-Shock Proteins - genetics | Apoptosis Regulatory Proteins - metabolism | HSP70 Heat-Shock Proteins - metabolism | Protein Transport | Vacuolar Sorting Protein VPS15 - metabolism | Class III Phosphatidylinositol 3-Kinases - genetics | Vacuoles - metabolism | Trans-Activators - metabolism | Trans-Activators - antagonists & inhibitors | RNA, Small Interfering - metabolism
Journal Article
American journal of physiology. Lung cellular and molecular physiology, ISSN 1522-1504, 2015, Volume 308, Issue 1, pp. L33 - L47
Mutation of threonine for isoleucine at codon 73 (I73T) in the human surfactant protein C (hSP-C) gene ( SFTPC... 
Surfactant protein | Pulmonary fibrosis | Alveolar epithelium | Autophagy | Amphisome | alveolar epithelium | autophagy | amphisome | surfactant protein | pulmonary fibrosis | DOMAIN | PHYSIOLOGY | SURFACTANT PROTEIN-C | FUSION | AGGRESOME FORMATION | ENDOPLASMIC-RETICULUM STRESS | MULTIVESICULAR BODIES | RESPIRATORY SYSTEM | MUTATION | DEGRADATION | PULMONARY-FIBROSIS | Proteostasis Deficiencies - metabolism | Lung Diseases, Interstitial - metabolism | Vacuoles - ultrastructure | Lung Diseases, Interstitial - pathology | Microtubule-Associated Proteins - genetics | Sequestosome-1 Protein | Humans | Lysosomes - genetics | Genetic Diseases, Inborn - genetics | Infant | rab GTP-Binding Proteins - genetics | Genetic Diseases, Inborn - pathology | Mutation, Missense | Mitochondria - ultrastructure | Lysosomes - metabolism | ATP-Binding Cassette Transporters - genetics | Mitochondria - genetics | HEK293 Cells | ATP-Binding Cassette Transporters - metabolism | Membrane Potential, Mitochondrial - genetics | Female | Genetic Diseases, Inborn - metabolism | Microfilament Proteins - genetics | Vacuoles - genetics | Gene Expression Regulation - genetics | Proteostasis Deficiencies - pathology | Pulmonary Surfactant-Associated Protein C - metabolism | Mitochondria - metabolism | Microtubule-Associated Proteins - biosynthesis | rab GTP-Binding Proteins - biosynthesis | Ubiquitin-Protein Ligases - biosynthesis | Lysosomes - ultrastructure | Autophagy-Related Protein 8 Family | Proteostasis Deficiencies - genetics | Microfilament Proteins - biosynthesis | Lung Diseases, Interstitial - genetics | Adaptor Proteins, Signal Transducing - genetics | Pulmonary Surfactant-Associated Protein C - genetics | Vacuoles - metabolism | Adaptor Proteins, Signal Transducing - biosynthesis | Ubiquitin-Protein Ligases - genetics | Amino Acid Substitution | Autophagy (Cytology) | Usage | Genetic aspects | Epithelium | Health aspects | Lung diseases | Call for Papers
Journal Article
eLife, ISSN 2050-084X, 2014, Volume 3, p. e01612
... mitochondria remains unclear. In this study, we demonstrate that TBC1D15, a mitochondrial Rab GTPase-activating protein (Rab-GAP... 
Fis1 | rab7 | autophagy | TBC1D15 | Drp1 | Parkin | PARKIN | FIS1 | RECRUITMENT | GTPASE-ACTIVATING PROTEINS | MEMBRANE | PEROXISOMAL FISSION | P62/SQSTM1 | BIOLOGY | DEGRADATION | MAMMALIAN-CELLS | SELECTIVE AUTOPHAGY | Mitochondria - enzymology | Microtubule-Associated Proteins - genetics | Microtubule-Associated Proteins - metabolism | Humans | Protein Multimerization | rab GTP-Binding Proteins - genetics | Mitochondrial Proteins - genetics | GTPase-Activating Proteins - metabolism | Autophagy | Microtubules - metabolism | Ubiquitination | Lysosomes - metabolism | Transfection | Time Factors | Mitochondrial Proteins - metabolism | HEK293 Cells | Lysosomes - pathology | Membrane Proteins - metabolism | Microfilament Proteins - metabolism | Microfilament Proteins - genetics | rab GTP-Binding Proteins - metabolism | Signal Transduction | Membrane Proteins - genetics | HCT116 Cells | Ubiquitin-Protein Ligases - metabolism | Mitochondria - pathology | Mitochondrial Degradation | Autophagy-Related Protein 8 Family | Adaptor Proteins, Signal Transducing - genetics | Protein Binding | GTPase-Activating Proteins - genetics | HeLa Cells | Adaptor Proteins, Signal Transducing - metabolism | Ubiquitin-Protein Ligases - genetics | Membranes | Yeast | Cloning | Glycerol | Mammals | Morphogenesis | Proteins | Mitochondria | GTPase-activating protein | Microscopy | PTEN-induced putative kinase | Morphology | Parkin protein | GABARAP protein | Guanosinetriphosphatase
Journal Article
11.