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1. Full Text PpGpp: Magic beyond RNA polymerase
by Dalebroux, Zachary D and Swanson, Michele S
Nature reviews. Microbiology, ISSN 1740-1526, 03/2012, Volume 10, Issue 3, pp. 203 - 212
Life Sciences & Biomedicine | Microbiology | Science & Technology | Sigma Factor - metabolism | Bacterial Physiological Phenomena | Environment | DNA-Directed RNA Polymerases - metabolism | Gene Expression Regulation, Bacterial | Guanosine Tetraphosphate - metabolism | Physiological aspects | Bacteria | Purine nucleotides | Research | RNA polymerases | Index Medicus
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2. Full Text Structural Basis for Promoter −10 Element Recognition by the Bacterial RNA Polymerase σ Subunit
by Feklistov, Andrey and Darst, Seth A
Cell (Cambridge), ISSN 0092-8674, 2011, Volume 147, Issue 6, pp. 1257 - 1269
Promoter Regions, Genetic | Sigma Factor - chemistry | Sigma Factor - metabolism | DNA, Single-Stranded - metabolism | Bacterial Proteins - chemistry | Models, Molecular | Crystallography, X-Ray | Escherichia coli Proteins - metabolism | DNA, Single-Stranded - chemistry | Base Pairing | Base Sequence | Escherichia coli - metabolism | Hydrophobic and Hydrophilic Interactions | Bacterial Proteins - metabolism | DNA-Directed RNA Polymerases - chemistry | DNA-Directed RNA Polymerases - metabolism | Escherichia coli Proteins - chemistry | Thermus - metabolism | Index Medicus
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3. Full Text New target for inhibition of bacterial RNA polymerase: ‘switch region’
by Srivastava, Aashish and Talaue, Meliza and Liu, Shuang and Degen, David and Ebright, Richard Y and Sineva, Elena and Chakraborty, Anirban and Druzhinin, Sergey Y and Chatterjee, Sujoy and Mukhopadhyay, Jayanta and Ebright, Yon W and Zozula, Alex and Shen, Juan and Sengupta, Sonali and Niedfeldt, Rui Rong and Xin, Cai and Kaneko, Takushi and Irschik, Herbert and Jansen, Rolf and Donadio, Stefano and Connell, Nancy and Ebright, Richard H
Current opinion in microbiology, ISSN 1369-5274, 2011, Volume 14, Issue 5, pp. 532 - 543
Pathology | Life Sciences & Biomedicine | Microbiology | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Miscellaneous | Bacteriology | Aminoglycosides - isolation & purification | Bacterial Proteins - antagonists & inhibitors | DNA-Directed RNA Polymerases - antagonists & inhibitors | Lactones - isolation & purification | Microbial Viability - drug effects | Humans | Bacteria - drug effects | Bacteria - enzymology | Anti-Bacterial Agents - pharmacology | Anti-Bacterial Agents - isolation & purification | Aminoglycosides - pharmacology | Lactones - pharmacology | RNA | Antibacterial agents | Tuberculosis | Index Medicus
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4. Full Text The RNA Polymerase “Switch Region” Is a Target for Inhibitors
by Mukhopadhyay, Jayanta and Das, Kalyan and Ismail, Sajida and Koppstein, David and Jang, Minyoung and Hudson, Brian and Sarafianos, Stefan and Tuske, Steven and Patel, Jay and Jansen, Rolf and Irschik, Herbert and Arnold, Eddy and Ebright, Richard H and Brookhaven National Laboratory (BNL) National Synchrotron Light Source
Cell (Cambridge), ISSN 0092-8674, 2008, Volume 135, Issue 2, pp. 295 - 307
DNA | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Bacterial Proteins - antagonists & inhibitors | Promoter Regions, Genetic | Thermus thermophilus - enzymology | DNA-Directed RNA Polymerases - antagonists & inhibitors | Bacterial Infections - drug therapy | Humans | Bacterial Proteins - chemistry | Models, Molecular | Lactones - pharmacology | Hydrophobic and Hydrophilic Interactions | Transcription, Genetic | Anti-Bacterial Agents - pharmacology | DNA-Directed RNA Polymerases - chemistry | RNA | Antibacterial agents | RNA polymerases | Index Medicus | ANTIBIOTICS | RNA POLYMERASES | BASIC BIOLOGICAL SCIENCES | TRANSCRIPTION | national synchrotron light source | FUNCTIONS | INTERACTIONS | 60 APPLIED LIFE SCIENCES | PROMOTERS | DRUGS | GENERAL AND MISCELLANEOUS//MATHEMATICS, COMPUTING, AND INFORMATION SCIENCE | TARGETS
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5. Full Text Structural Basis of Transcription Initiation: RNA Polymerase Holoenzyme at 4 Å Resolution
by Katsuhiko S. Murakami and Shoko Masuda and Seth A. Darst
Science (American Association for the Advancement of Science), ISSN 0036-8075, 5/2002, Volume 296, Issue 5571, pp. 1280 - 1284
Enzymes | Yeasts | RNA | Active sites | DNA | Crystals | Promoter regions | Research Articles | Nucleotides | Color semiotics | Hybridity | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Transcription. Transcription factor. Splicing. Rna processing | Molecular and cellular biology | Molecular genetics | Protein Structure, Tertiary | Promoter Regions, Genetic | Sigma Factor - metabolism | DNA, Bacterial - metabolism | Protein Structure, Secondary | Thermus - enzymology | Crystallization | Models, Molecular | Crystallography, X-Ray | Eukaryotic Cells - metabolism | Holoenzymes - chemistry | RNA, Messenger - metabolism | Amino Acid Motifs | Holoenzymes - metabolism | Protein Structure, Quaternary | Protein Conformation | Transcription, Genetic | DNA-Directed RNA Polymerases - chemistry | DNA-Directed RNA Polymerases - metabolism | Binding Sites | RNA, Bacterial - metabolism | Observations | RNA polymerases | Genetic transcription | Genetics | Bacteria | Cellular biology | Ribonucleic acid--RNA | Ribonucleic acid | Index Medicus
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6. Full Text Interactions between RNA polymerase and the "core recognition element" counteract pausing
by Irina O. Vvedenskaya and Hanif Vahedian-Movahed and Jeremy G. Bird and Jared G. Knoblauch and Seth R. Goldman and Yu Zhang and Richard H. Ebright and Bryce E. Nickels
Science (American Association for the Advancement of Science), ISSN 0036-8075, 6/2014, Volume 344, Issue 6189, pp. 1285 - 1289
Pathogens | Infectious diseases | RNA | DNA | REPORTS | Fungal infections | Nucleotides | Epidemiology | Scaffolds | Metapopulation ecology | Parasite hosts | Genome, Bacterial - genetics | Escherichia coli - genetics | Transcription Initiation Site | DNA-Directed RNA Polymerases - chemistry | DNA-Directed RNA Polymerases - genetics | Transcription Initiation, Genetic | DNA-Directed RNA Polymerases - metabolism | Gene Expression Regulation, Bacterial | Phosphoric Monoester Hydrolases - metabolism | Phosphoric Monoester Hydrolases - chemistry | Transcription Elongation, Genetic | RNA sequencing | Genetic transcription | Properties | Methods | RNA polymerases | RNA polymerase | Ribozymes | E coli | Molecular biology | Genomics | Index Medicus | Polymerase | Ribonucleic acids | Genes | Escherichia coli | Deoxyribonucleic acid | Genomes | Gene expression | Recognition
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7. Full Text RNA Polymerase Pausing during Initial Transcription
by Duchi, Diego and Bauer, David L.V and Fernandez, Laurent and Evans, Geraint and Robb, Nicole and Hwang, Ling Chin and Gryte, Kristofer and Tomescu, Alexandra and Zawadzki, Pawel and Morichaud, Zakia and Brodolin, Konstantin and Kapanidis, Achillefs N
Molecular cell, ISSN 1097-2765, 09/2016, Volume 63, Issue 6, pp. 939 - 950
promoter escape | DNA scrunching | transcriptional pausing | single-molecule FRET | initial transcription | RNA polymerase | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Promoter Regions, Genetic | Nucleic Acid Synthesis Inhibitors - pharmacology | RNA, Messenger - genetics | Escherichia coli Proteins - metabolism | DNA-Directed RNA Polymerases - genetics | Single Molecule Imaging - methods | RNA, Messenger - biosynthesis | Time Factors | Escherichia coli - genetics | Base Sequence | RNA, Messenger - antagonists & inhibitors | Escherichia coli - metabolism | Escherichia coli Proteins - genetics | Fluorescence Resonance Energy Transfer | RNA, Bacterial - genetics | Transcription, Genetic | Rifampin - pharmacology | DNA-Directed RNA Polymerases - metabolism | RNA, Bacterial - metabolism | Lac Operon | Genetic research | Fluorescence | Genetic transcription | RNA | Analysis | RNA polymerases | Index Medicus
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8. Full Text Metal‐responsive RNA polymerase extracytoplasmic function (ECF) sigma factors
by Moraleda‐Muñoz, Aurelio and Marcos‐Torres, Francisco Javier and Pérez, Juana and Muñoz‐Dorado, José
Molecular microbiology, ISSN 0950-382X, 08/2019, Volume 112, Issue 2, pp. 385 - 398
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Microbiology | Science & Technology | Sigma Factor - metabolism | Bacteria - metabolism | Metals - metabolism | Bacterial Proteins - genetics | Bacteria - enzymology | Bacterial Proteins - metabolism | DNA-Directed RNA Polymerases - genetics | DNA-Directed RNA Polymerases - metabolism | Gene Expression Regulation, Bacterial | Sigma Factor - genetics | Bacteria - genetics | RNA | Physiological aspects | Cellular signal transduction | Cadmium | Reactive oxygen species | Metals | Metal concentrations | Homeostasis | Iron | RNA polymerase | Cobalt | DNA-directed RNA polymerase | Zinc | Heavy metals | Cofactors | Signal transduction | Depletion | Nickel | Transduction | Variation | Viability | Index Medicus | Celebrating 25 years of ECF sigma factors | MicroReview | Thematic Issue
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