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Bioinformatics, ISSN 1367-4803, 10/2009, Volume 25, Issue 20, pp. 2646 - 2654
Journal Article
Bioinformatics, ISSN 1367-4803, 03/2006, Volume 22, Issue 5, pp. 614 - 615
Journal Article
Bioinformatics, ISSN 1367-4803, 10/2013, Volume 29, Issue 20, pp. 2524 - 2528
Motivation: Understanding the details of protein-RNA interactions is important to reveal the functions of both the RNAs and the proteins. In these... 
INTERFACE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SEQUENCE | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | CLASSIFICATION | PREDICTION | Proteins - metabolism | Base Pairing | Hydrogen Bonding | Amino Acids - chemistry | Probability | Proteins - chemistry | RNA - chemistry | RNA - metabolism | Index Medicus
Journal Article
Journal of Computational Chemistry, ISSN 0192-8651, 07/2004, Volume 25, Issue 10, pp. 1295 - 1304
Journal Article
Journal of Chemical Physics, ISSN 0021-9606, 03/2011, Volume 134, Issue 11, pp. 115102 - 115102-6
We have studied the separation of a double stranded DNA (dsDNA), which is driven by either the temperature or force. By monitoring the probability of opening... 
STRANDED-DNA | TRANSITION | DENATURATION | PEYRARD-BISHOP MODEL | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | MOLECULES | Probability | Nucleic Acid Denaturation | DNA - chemistry | Temperature | Base Pairing | Nucleic Acid Conformation | Index Medicus
Journal Article
Algorithms for Molecular Biology, ISSN 1748-7188, 03/2006, Volume 1, Issue 1, pp. 3 - 3
Background: RNA has been recognized as a key player in cellular regulation in recent years. In many cases, non-coding RNAs exert their function by binding to... 
BIOCHEMICAL RESEARCH METHODS | DYNAMIC-PROGRAMMING ALGORITHM | THERMODYNAMIC PARAMETERS | NUCLEIC-ACIDS | INCLUDING PSEUDOKNOTS | NONCODING RNAS | COMPARATIVE GENOMICS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | COMPUTATIONAL IDENTIFICATION | MATHEMATICAL & COMPUTATIONAL BIOLOGY | SECONDARY STRUCTURE | STRUCTURE PREDICTION | MICRORNA
Journal Article
Bioinformatics, ISSN 1367-4803, 2/2008, Volume 24, Issue 3, pp. 367 - 373
Journal Article
Bioinformatics, ISSN 1367-4803, 2013, Volume 29, Issue 19, pp. 2479 - 2481
Local opening of the DNA double helix is required in many fundamental biological processes and is, in part, controlled by the degree of superhelicity imposed... 
SIDD SITES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Thermodynamics | Base Pairing | Genomics | DNA, Superhelical - chemistry | Probability | DNA, Bacterial - chemistry | Escherichia coli - chemistry | Software Design | Index Medicus | Computer Science
Journal Article
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, ISSN 1539-3755, 11/2010, Volume 82, Issue 5, pp. 051924 - 051924
We consider an elastic chain at thermodynamic equilibrium with a heat bath, and derive an approximation to the probability density function, or pdf, governing... 
STATISTICAL-MECHANICS | RICCATI-EQUATIONS | BENT DNA | PHYSICS, FLUIDS & PLASMAS | WORMLIKE CHAINS | RING | CONSEQUENCES | PHYSICS, MATHEMATICAL | Thermodynamics | Biomechanical Phenomena | DNA - chemistry | Base Pairing | Elasticity | Models, Molecular | Probability | Index Medicus
Journal Article
RNA Biology, ISSN 1547-6286, 07/2018, Volume 15, Issue 7, pp. 976 - 989
Adenosine deaminases acting on RNA (ADARs) catalyze the deamination of adenosine (A) to inosine (I). A-to-I RNA editing targets double-stranded RNA (dsRNA),... 
RNA editing | double-stranded RNA binding protein | RIP-seq | miRNA | ADAR | miRNA manqué | binding preference | METHYLENE-BLUE