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IEEE Transactions on Parallel and Distributed Systems, ISSN 1045-9219, 01/2018, Volume 29, Issue 1, pp. 144 - 155
Journal Article
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 12/2016, Volume 113, Issue 52, pp. E8396 - E8405
Journal Article
IEEE Transactions on Information Theory, ISSN 0018-9448, 04/2018, Volume 64, Issue 4, pp. 2941 - 2952
Journal Article
ARS COMBINATORIA, ISSN 0381-7032, 01/2019, Volume 143, pp. 215 - 226
A T-net of order m is a graph with m nodes and 2m directed edges, where every node has indegree and outdegree equal to 2. (A well known example of T-nets are... 
MATHEMATICS | T-net | Bijection | De Bruijn Graph | De Bruijn Sequence
Journal Article
European Journal of Operational Research, ISSN 0377-2217, 02/2018, Volume 264, Issue 3, pp. 799 - 812
With the ubiquitous presence of next-generation sequencing in modern biological, genetic, pharmaceutical and medical research, not everyone pays attention to... 
DNA de novo assembly | Whole genome sequencing | Graph algorithms | DE-BRUIJN GRAPHS | OPERATIONS RESEARCH & MANAGEMENT SCIENCE | ERRORS | ALIGNMENT | MULTIPLE GPUS | INFORMATION | COMPLEXITY | HYBRIDIZATION | GENOME | Usage | Algorithms | Nucleotide sequencing | Analysis | DNA sequencing
Journal Article
Discrete Applied Mathematics, ISSN 0166-218X, 06/2019, Volume 262, pp. 29 - 41
For a directed graph with the vertex set , a is a subset with the property that for each vertex the set of vertices of reachable from by a directed path of... 
De Bruijn network | Resolving set | Dominating set | Identifying codes | Determining set | MATHEMATICS, APPLIED | DOMINATION | Lower bounds | Graphs | Graph theory | Apexes | Automorphisms
Journal Article
IEEE Transactions on Information Theory, ISSN 0018-9448, 02/2017, Volume 63, Issue 2, pp. 1325 - 1335
Journal Article
Journal of Graph Theory, ISSN 0364-9024, 01/2018, Volume 87, Issue 1, pp. 77 - 88
A well‐known combinatorial theorem says that a set of n non‐collinear points in the plane determines at least n distinct lines. Chen and Chvátal conjectured... 
graphe metric | Chen‐Chvatal conjecture | Chen-Chvatal conjecture | MATHEMATICS | BRUIJN-ERDOS THEOREM | LINES
Journal Article
Bioinformatics, ISSN 1367-4803, 03/2015, Volume 31, Issue 5, pp. 642 - 646
Motivation: Single nucleotide polymorphism (SNP) discovery is an important preliminary for understanding genetic variation. With current sequencing methods, we... 
DE-BRUIJN GRAPHS | ARABIDOPSIS-THALIANA | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SEQUENCE | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Polymorphism, Single Nucleotide - genetics | Algorithms | Genome, Human | Genomics - methods | Sequence Analysis, DNA - methods | Humans | Original Papers
Journal Article
International Journal of Foundations of Computer Science, ISSN 0129-0541, 12/2018, Volume 29, Issue 8, pp. 1279 - 1295
Compressed suffix trees and bidirectional FM-indexes can store a set of strings and support queries that let us explore the set of substrings they contain,... 
bidirectional FM-index | de Bruijn graphs | Burrows-Wheeler transform | SINGLE-CELL | WAVELET TREES | NOVO ASSEMBLER | IDBA | COMPUTER SCIENCE, THEORY & METHODS | ALGORITHMS
Journal Article
Bioinformatics, ISSN 1367-4803, 01/2018, Volume 34, Issue 1, pp. 147 - 154
Abstract Motivation We present Faucet, a two-pass streaming algorithm for assembly graph construction. Faucet builds an assembly graph incrementally as each... 
MEMORY | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | ALGORITHM | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | BRUIJN GRAPHS | READS | Recomb-Ccb | Special Issue | Recomb-Seq | Recomb-Cg
Journal Article
Discrete Mathematics, ISSN 0012-365X, 05/2017, Volume 340, Issue 5, pp. 995 - 999
A classical theorem of De Bruijn and Erdős asserts that any noncollinear set of points in the plane determines at least distinct lines. We prove that an... 
De Bruijn–Erdős theorem | Betweenness | Lines | MATHEMATICS | De Bruijn-Erclos theorem | HYPERGRAPHS
Journal Article
Bioinformatics, ISSN 1367-4803, 11/2013, Volume 29, Issue 22, pp. 2826 - 2834
Motivation: Although many tools are available to study variation and its impact in single genomes, there is a lack of algorithms for finding such variation in... 
DE-BRUIJN GRAPHS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | MICROBIOME | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | ALGORITHMS | BINDING | Genetic Variation | Algorithms | Humans | Alleles | Metagenomics - methods | Infant | Contig Mapping | Software | Metagenome | Original Papers
Journal Article
Bioinformatics, ISSN 1367-4803, 2017, Volume 33, Issue 6, pp. 799 - 806
Journal Article
Journal Article
Journal Article