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1. Full Text The role of pH in determining the species composition of the human colonic microbiota
by Duncan, Sylvia H and Louis, Petra and Thomson, John M and Flint, Harry J
Environmental Microbiology, ISSN 1462-2912, 08/2009, Volume 11, Issue 8, pp. 2112 - 2122
Summary The pH of the colonic lumen varies with anatomical site and microbial fermentation of dietary residue. We have investigated the impact of mildly acidic... 
ALIGNMENT | INTESTINAL MICROBIOTA | ACIDS | ESCHERICHIA-COLI | FERMENTATION | MICROBIOLOGY | FECAL FLORA | COMMUNITIES | BUTYRATE-PRODUCING BACTERIA | DIETARY-INTAKE | GUT BACTERIA | Humans | Starch - metabolism | Molecular Sequence Data | Gram-Negative Bacteria - metabolism | Dietary Carbohydrates - metabolism | Gram-Negative Bacteria - isolation & purification | Colon - metabolism | Fatty Acids, Volatile - metabolism | Gram-Positive Bacteria - metabolism | Gram-Positive Bacteria - classification | Base Sequence | Gram-Negative Bacteria - growth & development | Gram-Positive Bacteria - isolation & purification | Colon - microbiology | Gram-Positive Bacteria - growth & development | Gram-Negative Bacteria - classification | Hydrogen-Ion Concentration | RNA | Analysis | Propionates | Water quality | Ecology | Glucose | Hydrogen-ion concentration | Fermentation | Fatty acids | Dextrose
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2. Full Text Oscillospira and related bacteria – From metagenomic species to metabolic features
by Gophna, Uri and Konikoff, Tom and Nielsen, Henrik Bjørn
Environmental Microbiology, ISSN 1462-2912, 03/2017, Volume 19, Issue 3, pp. 835 - 841
Summary Oscillospira is an under‐studied anaerobic bacterial genus from Clostridial cluster IV that has resisted cultivation for over a century since the first... 
CONNECTION | CONSTIPATION | ACID | DATABASE | INTESTINAL MICROBIOTA | SEQUENCE | STOOL CONSISTENCY | MICROBIOLOGY | GUT MICROBIOTA | BUTYRATE-PRODUCING BACTERIA | OSCILLIBACTER-RUMINANTIUM | Feces - microbiology | Metagenomics | Butyrates - metabolism | Genome, Bacterial | Animals | Clostridiales - classification | Metabolic Networks and Pathways | Humans | Gastrointestinal Microbiome | Clostridiales - genetics | Clostridium - genetics | RNA, Ribosomal, 16S | Microbiota (Symbiotic organisms) | RNA | Analysis | Genomics | Physiological aspects | Esters | Bacteria | Metabolism
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3. Full Text Severity of atopic disease inversely correlates with intestinal microbiota diversity and butyrate-producing bacteria
by Nylund, L and Nermes, M and Isolauri, E and Salminen, S and Vos, de, W.M and Satokari, R
Allergy, ISSN 0105-4538, 2015, Volume 70, Issue 2, pp. 241 - 244
The reports on atopic diseases and microbiota in early childhood remain contradictory and both decreased and increased microbiota diversity have been... 
eczema severity | microbiota diversity | butyrate‐producing bacteria | scoring atopic dermatitis | butyrate-producing bacteria | ALLERGY | INFANTS | GUT MICROBIOTA | IMMUNOLOGY | Severity of Illness Index | Eczema - diagnosis | Bacteria - metabolism | Butyrates - metabolism | Follow-Up Studies | Humans | Infant | Biodiversity | Eczema - etiology | Dermatitis, Atopic - diagnosis | Hypersensitivity, Immediate - etiology | Microbiota | Intestines - microbiology | Dermatitis, Atopic - etiology | Hypersensitivity, Immediate - diagnosis | Esters | Bacteria | Microbiota (Symbiotic organisms) | Atopic dermatitis | Analysis | Babies | Microbiology | Eczema | gut microbiota | dermatitis | infants
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4. Full Text Dominant and diet-responsive groups of bacteria within the human colonic microbiota
by Walker, Alan W and Ince, Jennifer and Duncan, Sylvia H and Webster, Lucy M and Holtrop, Grietje and Ze, Xiaolei and Brown, David and Stares, Mark D and Scott, Paul and Bergerat, Aurore and Louis, Petra and McIntosh, Freda and Johnstone, Alexandra M and Lobley, Gerald E and Parkhill, Julian and Flint, Harry J
The ISME Journal, ISSN 1751-7362, 02/2011, Volume 5, Issue 2, pp. 220 - 230
The populations of dominant species within the human colonic microbiota can potentially be modified by dietary intake with consequences for health. Here we... 
Ruminococcus | 16S rRNA | Human colon | phylotypes | resistant starch | temporal change | IN-SITU HYBRIDIZATION | WEIGHT-LOSS | MICROBIOLOGY | COMMUNITIES | BUTYRATE-PRODUCING BACTERIA | human colon | OBESITY | LARGE-BOWEL | ECOLOGY | DIVERSITY | HUMAN GUT | 16S RIBOSOMAL-RNA | Archaea - physiology | Bacteria - metabolism | Humans | Starch - metabolism | Male | Biodiversity | Dietary Carbohydrates - metabolism | Bacteria - genetics | Diet, Reducing | Metagenome - physiology | Cross-Over Studies | Dietary Proteins - metabolism | Feces - microbiology | Bacteria - growth & development | Metagenome - genetics | Diet | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Archaea - genetics | Colon - microbiology | Archaea - growth & development | Carbohydrates | Polysaccharides | rRNA 16S | Starch | Body weight | Dietary intake | Feces | Digestive tract | High carbohydrate diet | Original
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5. Full Text Bifidobacteria and butyrate-producing colon bacteria: Importance and strategies for their stimulation in the human gut
by Rivière, Audrey and Selak, Marija and Lantin, David and Leroy, Frédéric and De Vuyst, Luc
Frontiers in Microbiology, ISSN 1664-302X, 2016, Volume 7, p. 979
With the increasing amount of evidence linking certain disorders of the human body to a disturbed gut microbiota, there is a growing interest for compounds... 
Probiotics | Butyrate-producing colon bacteria | Inulin-type fructans | Bifidobacteria | Cross-feeding | Arabinoxylan-oligosaccharides | Prebiotics | bifidobacteria | cross-feeding | CROSS-FEEDING INTERACTIONS | INTESTINAL MICROBIOTA | FECAL MICROBIOTA | IN-VITRO FERMENTATION | CARBOHYDRATE-ACTIVE ENZYMES | MICROBIOLOGY | BUTYRICICOCCUS-PULLICAECORUM | butyrate-producing colon bacteria | arabinoxylan-oligosaccharides | BETA-FRUCTOFURANOSIDASE | prebiotics | inulin-type fructans | ALPHA-L-ARABINOFURANOSIDASES | STRUCTURAL-PROPERTIES | probiotics | Esters | Bacteria | Microbiota (Symbiotic organisms) | Gastrointestinal system
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6. Full Text Phylogenetic distribution of genes encoding β‐glucuronidase activity in human colonic bacteria and the impact of diet on faecal glycosidase activities
by McIntosh, Freda M and Maison, Nathalie and Holtrop, Grietje and Young, Pauline and Stevens, Valerie J and Ince, Jennifer and Johnstone, Alexandra M and Lobley, Gerald E and Flint, Harry J and Louis, Petra
Environmental Microbiology, ISSN 1462-2912, 08/2012, Volume 14, Issue 8, pp. 1876 - 1887
Summary Bacterial β‐glucuronidase in the human colon plays an important role in cleaving liver conjugates of dietary compounds and xenobiotics, while other... 
MICROBIOLOGY | POLYPHENOLS | EVOLUTION | HUMAN GUT | METABOLISM | BUTYRATE-PRODUCING BACTERIA | Feces - enzymology | Glycoside Hydrolases - genetics | Humans | Glucuronidase - metabolism | Male | Phylogeny | Bacteria - genetics | Feces - microbiology | Diet | Glucuronidase - genetics | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Bacteria - enzymology | Colon - microbiology | Glycoside Hydrolases - metabolism | Metagenome
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7. Full Text Nondigestible carbohydrates, butyrate, and butyrate-producing bacteria
by Fu, Xiaodan and Liu, Zhemin and Zhu, Changliang and Mou, Haijin and Kong, Qing
Critical Reviews in Food Science and Nutrition, ISSN 1040-8398, 06/2019, Volume 59, Issue sup1, pp. S130 - S152
Nondigestible carbohydrates (NDCs) are fermentation substrates in the colon after escaping digestion in the upper gastrointestinal tract. Among NDCs, resistant... 
butyrate | short-chain fatty acids | butyrate-producing bacteria | Nondigestible carbohydrates | oligosaccharides | GERMINATED BARLEY FOODSTUFF | INCREASES SERUM PROPIONATE | INULIN-TYPE FRUCTANS | FOOD SCIENCE & TECHNOLOGY | IN-VITRO FERMENTATION | NUTRITION & DIETETICS | INFLAMMATORY-BOWEL-DISEASE | CHAIN FATTY-ACIDS | DIETARY FIBER | SODIUM-INDUCED COLITIS | HUMAN FECAL MICROBIOTA | 16S RIBOSOMAL-RNA
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8. Full Text Distribution of β-glucosidase and β-glucuronidase activity and of β-glucuronidase gene gus in human colonic bacteria
by Dabek, Marta and McCrae, Sheila I and Stevens, Valerie J and Duncan, Sylvia H and Louis, Petra
FEMS Microbiology Ecology, ISSN 0168-6496, 12/2008, Volume 66, Issue 3, pp. 487 - 495
Abstract β-Glycosidase activities present in the human colonic microbiota act on glycosidic plant secondary compounds and xenobiotics entering the colon, with... 
microbiota | colon | β‐glucuronidase | β‐glucosidase | enzyme activity | degenerate PCR | β-glucuronidase | Microbiota | Enzyme activity | Colon | Degenerate PCR | β-glucosidase | MICROFLORA | RUMINOCOCCUS-GNAVUS | MICROBIOLOGY | BUTYRATE-PRODUCING BACTERIA | beta-glucosidase | CANCER | INTESTINAL BACTERIA | METABOLISM | CLONING | DIETARY FIBER | ENZYMES | DIVERSITY | beta-glucuronidase | Carbon - metabolism | Genes, Bacterial - genetics | Humans | Glucuronidase - metabolism | Molecular Sequence Data | Phylogeny | Bacteria - genetics | Feces - microbiology | Bacteria - growth & development | Bacteria - isolation & purification | Polymerase Chain Reaction | beta-Glucosidase - metabolism | Bacteria - enzymology | Colon - microbiology | Glycoside Hydrolases - metabolism | Nitrophenol | Glycosidases | Cellobiase | b-Glucosidase | Bacteria | Glucosidase | Xenobiotics | Strains (organisms)
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9. Full Text A phylogenomic view of ecological specialization in the lachnospiraceae, a family of digestive tract-associated bacteria
by Meehan, Conor J and Beiko, Robert G
Genome Biology and Evolution, ISSN 1759-6653, 2014, Volume 6, Issue 3, pp. 703 - 713
Several bacterial families are known to be highly abundant within the human microbiome, but their ecological roles and evolutionary histories have yet to be... 
Metagenomics | Lateral gene transfer | Sporulation | Butyric acid | Microbial genomes | Phylogenomics | GEN. NOV | HUMAN COLON | MAXIMUM-LIKELIHOOD | microbial genomes | BUTYRATE-PRODUCING BACTERIA | HUMAN LARGE-INTESTINE | MULTIPLE SEQUENCE ALIGNMENT | lateral gene transfer | GENOME | HUMAN GUT MICROBIOME | EVOLUTIONARY BIOLOGY | butyric acid | CLOSTRIDIUM-PROTEOCLASTICUM | BOVINE RUMEN | metagenomics | GENETICS & HEREDITY | phylogenomics | sporulation | Genome, Bacterial | Humans | Gastrointestinal Tract - microbiology | Gene Transfer, Horizontal | Phylogeny | Bacteria - genetics | Mammals - microbiology | Sequence Analysis, DNA | Bacteria - isolation & purification | Animals | Butyric Acid - metabolism | Ecosystem | RNA, Ribosomal, 16S - genetics | Metagenome | Evolution, Molecular
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10. Full Text Core Gut Bacteria Analysis of Healthy Mice
by Wang, JJ and Lang, T and Shen, J and Dai, JJ and Tian, L and Wang, XP
FRONTIERS IN MICROBIOLOGY, ISSN 1664-302X, 04/2019, Volume 10, p. 887
Previous studies revealed that there existed great individual variations of gut microbiota in mice, and the gut bacteria of mice were changed with the... 
GEN. NOV | BUTYRATE-PRODUCING BACTERIUM | ecological relationship | immunomodulatory bacteria | COLONIC INFLAMMATION | INTESTINAL MICROBIOTA | carbohydrate- and amino acid-metabolizing bacteria | MICROBIOLOGY | EMENDED DESCRIPTION | fecal microbiota transplantation | RESPONSES | CHAIN FATTY-ACIDS | SP-NOV | core gut bacteria | ACETATE | MODULATION | probiotics | Microbiota (Symbiotic organisms) | Bacteria | Analysis
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11. Full Text Impact of micro‐environmental changes on respiratory tract infections with intracellular bacteria
by Shima, Kensuke and Coopmeiners, Jonas and Graspeuntner, Simon and Dalhoff, Klaus and Rupp, Jan
FEBS Letters, ISSN 0014-5793, 11/2016, Volume 590, Issue 21, pp. 3887 - 3904
Community‐acquired pneumonia is caused by intra‐ and extracellular bacteria, with some of these bacteria also being linked to the pathogenesis of chronic lung... 
lung | anaerobic bacteria | chronic infection | C. pneumonia | SCFAs | micro‐environment | respiratory tract infection | microbiome | COPD | micro-environment | BIOCHEMISTRY & MOLECULAR BIOLOGY | BUTYRATE-PRODUCING BACTERIA | CHLAMYDOPHILA-PNEUMONIAE | CELL BIOLOGY | OBSTRUCTIVE PULMONARY-DISEASE | IN-VITRO | STREPTOCOCCUS-PNEUMONIAE | BIOPHYSICS | pneumonia | CHLAMYDIA-PNEUMONIAE INFECTION | CHAIN FATTY-ACIDS | ENDOTHELIAL-CELLS | SMOOTH-MUSCLE-CELLS | NF-KAPPA-B | Lung - microbiology | Humans | Chlamydophila Infections - immunology | Chlamydophila pneumoniae - growth & development | Dysbiosis | Intestines - immunology | Host-Pathogen Interactions | Respiratory Tract Infections - microbiology | Microbiota | Intestines - microbiology | Respiratory Tract Infections - immunology | Chlamydophila Infections - microbiology |