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Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), ISSN 0302-9743, 2014, Volume 8385, Issue 2, pp. 227 - 236
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2016, Volume 1358, pp. 197 - 207
Journal Article
Proceedings of SPIE - The International Society for Optical Engineering, ISSN 0277-786X, 2014, Volume 9073
Conference Proceeding
Proceedings of SPIE - The International Society for Optical Engineering, ISSN 0277-786X, 2016, Volume 9824
Conference Proceeding
Computational Biology and Chemistry, ISSN 1476-9271, 08/2018, Volume 75, pp. 54 - 64
We present our work on hardware accelerated genomics pipelines, using either FPGAs or GPUs to accelerate execution of BWA-MEM, a widely-used algorithm for... 
Systolic array | Short read mapping | Acceleration | FPGA | GPU | BWA-MEM | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | BIOLOGY | Usage | Algorithms | Digital integrated circuits | Genomics
Journal Article
Genome Medicine, ISSN 1756-994X, 04/2017, Volume 9, Issue 1, pp. 1 - 11
Bioinformatic analysis of genomic sequencing data to identify somatic mutations in cancer samples is far from achieving the required robustness and... 
Mutect2 | Somatic mutation | Filtering | Strelka | Novoalign | Whole exome sequencing | BWA | Platinum genome | NA12878 | Variant calling | CANCER | DISCOVERY | GENOMICS | DNA | GENETICS & HEREDITY | Library collections | Datasets | Pipelines | Genomics | Quality | Genomes | Breast cancer | Metastasis | Mutation | Bioinformatics | Deoxyribonucleic acid--DNA
Journal Article
Telkomnika, ISSN 1693-6930, 2013, Volume 11, Issue 2, pp. 373 - 380
Journal Article
by Feng, XL and Gao, J
INTERNATIONAL JOURNAL OF COMPUTERS COMMUNICATIONS & CONTROL, ISSN 1841-9836, 04/2019, Volume 14, Issue 2, pp. 141 - 153
Bioinformatics computing is a kind of big data processing problem, which usually has the characteristics of large data scale, large computational load and long... 
short reads mapping | Multiple inputs and outputs | COMPUTER SCIENCE, INFORMATION SYSTEMS | gene sequence alignment | BWA (Burrows-Wheeler aligner) | parallel computing | AUTOMATION & CONTROL SYSTEMS | MapReduce
Journal Article
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), ISSN 0302-9743, 2016, Volume 9637, pp. 130 - 142
Conference Proceeding
GENES, ISSN 2073-4425, 11/2019, Volume 10, Issue 11, p. 886
(1) Background: DNA sequence alignment process is an essential step in genome analysis. BWA-MEM has been a prevalent single-node tool in genome alignment... 
READ ALIGNMENT | Spark | BWA-MEM | GENETICS & HEREDITY | low overhead | TOOL | Sequence Alignment - methods | Algorithms | Humans | Big Data | Chromosome Mapping | Software | Genome, Human | High-Throughput Nucleotide Sequencing - methods | Sequence Analysis, DNA - methods | bwa-mem | spark
Journal Article
Frontiers in Systems Neuroscience, ISSN 1662-5137, 08/2012, Volume 6, Issue 2012, p. 58
Accurate classification or prediction of the brain state across individual subject, i.e., healthy, or with brain disorders, is generally a more difficult task... 
BWAS | ADHD | ReHo | Functional brain networks | fALFF | Pattern classification | pattern classific | functional brain networks
Journal Article
BMC PUBLIC HEALTH, ISSN 1471-2458, 08/2019, Volume 19, Issue 1, pp. 1188 - 9
Background Water advisories, especially those concerning boiling drinking water, are widely used to reduce risks of infection from contaminants in the water... 
Drinking water | GASTROINTESTINAL ILLNESS | Water supply interruptions | Adherence | INCIDENTS | IMPACT | PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH | Public compliance | BWAs | DRINKING-WATER | Boil water advisories | Communication | Consumer trust | Safety and security measures | Compliance | Health aspects | Analysis | Public compliances | Communications
Journal Article
Journal of Theoretical and Applied Information Technology, ISSN 1992-8645, 11/2015, Volume 81, Issue 2, pp. 166 - 173
Journal Article
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