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Science, ISSN 0036-8075, 7/2009, Volume 325, Issue 5937, pp. 184 - 187
Anaerobic methanotrophs help regulate Earth's climate and may have been an important part of the microbial ecosystem on the early Earth. The anaerobic... 
Methane | Birnessite | Ferrihydrite | Bacteria | Reports | Oxidation | Sulfates | Sulfur | Sediments | Manganese | Electrons | ARCHAEA | MICROBIAL COMMUNITIES | ANAEROBIC OXIDATION | REDUCTION | SEDIMENTS | MULTIDISCIPLINARY SCIENCES | SOIL | DIVERSITY | SULFATE-REDUCING BACTERIA | COLD SEEPS | BLACK-SEA | Anaerobiosis | Crenarchaeota - classification | Proteobacteria - metabolism | Molecular Sequence Data | Proteobacteria - classification | Phylogeny | Archaea - classification | Methanosarcinaceae - isolation & purification | Proteobacteria - genetics | Euryarchaeota - genetics | Geologic Sediments - microbiology | Thermodynamics | Bacteria - classification | Crenarchaeota - metabolism | Bacteroides - classification | Oxides - metabolism | Euryarchaeota - classification | Methanosarcinaceae - genetics | Bacteria - metabolism | Carbon Dioxide - metabolism | Crenarchaeota - isolation & purification | Ferric Compounds - metabolism | Methane - metabolism | Oxidation-Reduction | Methanosarcinaceae - classification | Archaea - isolation & purification | California | Bacteria - genetics | Methanosarcinaceae - metabolism | Euryarchaeota - isolation & purification | Bacteroides - genetics | Bacteroides - metabolism | Archaea - metabolism | Bacteria - isolation & purification | Manganese - metabolism | Euryarchaeota - metabolism | Proteobacteria - isolation & purification | Archaea - genetics | Crenarchaeota - genetics | Bacteroides - isolation & purification | Oxidation-reduction reaction | Chemical properties | Research | Methanogenesis | Marine biology | Microbiology
Journal Article
Glycobiology, ISSN 0959-6658, 11/2013, Volume 23, Issue 11, pp. 1281 - 1292
Human milk oligosaccharides (HMOS) are not digested in the proximal intestine. In distal intestine, HMOS collectively modify the microbiota, but the response... 
Glycosidase | Human milk oligosaccharides | Mutualist bacteria | Commensal bacteria | Organic acids | human milk oligosaccharides | DIARRHEA | STRATEGY | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | SIALIC-ACID CATABOLISM | BIFIDOBACTERIAL CONSUMPTION | organic acids | VIBRIO-CHOLERAE | mutualist bacteria | MOUSE INTESTINE | glycosidase | commensal bacteria | BREAST-FED INFANTS | INHIBIT | PATHOGENS | Escherichia coli K12 - growth & development | Lactobacillus delbrueckii - isolation & purification | Fucose - metabolism | Humans | Bifidobacterium - isolation & purification | Clostridium - isolation & purification | Bifidobacterium - growth & development | Streptococcus thermophilus - growth & development | Escherichia coli K12 - metabolism | Microbiota | Streptococcus thermophilus - metabolism | Culture Media | Escherichia coli K12 - isolation & purification | Bifidobacterium - metabolism | Lactobacillus delbrueckii - metabolism | Streptococcus thermophilus - isolation & purification | Milk, Human - metabolism | alpha-L-Fucosidase - metabolism | Clostridium - growth & development | Sialic Acids - metabolism | Gastrointestinal Tract - microbiology | Lactobacillus delbrueckii - growth & development | Enterococcus faecalis - growth & development | Glycosylation | Bacteroides - growth & development | Oligosaccharides - metabolism | Bacteroides - metabolism | Enterococcus faecalis - isolation & purification | Enterococcus faecalis - metabolism | Bacterial Proteins - metabolism | Clostridium - metabolism | Bacteroides - isolation & purification | Hydrogen-Ion Concentration | Original
Journal Article
Journal Article
Nature, ISSN 0028-0836, 12/2012, Volume 491, Issue 7427, pp. 113 - 117
The mammalian gastrointestinal tract provides a complex and competitive environment for the microbiota(1). Successful colonization by pathogens requires... 
MOUSE INTESTINE | K-12 | ENTEROHEMORRHAGIC ESCHERICHIA-COLI | CARBON NUTRITION | MULTIDISCIPLINARY SCIENCES | GROWTH | GUT | 2-COMPONENT SYSTEM | MEMBRANE-PROTEIN | PHOSPHATE-TRANSPORT-SYSTEM | UHP GENES | Protein Kinases - metabolism | Protein Kinases - genetics | Enterohemorrhagic Escherichia coli - genetics | Virulence Factors - genetics | Enterohemorrhagic Escherichia coli - growth & development | Fucose - metabolism | Enterohemorrhagic Escherichia coli - pathogenicity | Virulence - genetics | Mucins - metabolism | Rabbits | Signal Transduction | Receptors, Adrenergic - metabolism | alpha-L-Fucosidase - metabolism | Gastrointestinal Tract - microbiology | Escherichia coli Proteins - metabolism | Bacteroides - growth & development | Transcription Factors - genetics | Gastrointestinal Tract - metabolism | Transcription Factors - metabolism | Bacteroides - metabolism | Animals | Escherichia coli Proteins - genetics | Bacterial Proteins - metabolism | Bacteroides - enzymology | Gene Expression Regulation, Bacterial | Usage | Gastrointestinal diseases | Resveratrol | Genetic aspects | Research | Gene expression | Drug therapy | Health aspects | Risk factors | Histidine | Microbiota (Symbiotic organisms) | Escherichia coli | Gastrointestinal system | Physiological aspects | Cellular signal transduction | Competition | Microbiology | Kinases | Bacteriology
Journal Article
PLoS ONE, ISSN 1932-6203, 2011, Volume 6, Issue 6, p. e20944
Background: Alterations in the composition of gut microbiota - known as dysbiosis - has been proposed to contribute to the development of obesity, thereby... 
BACTERIAL COMMUNITY | INSULIN | IN-VITRO | LIPID-METABOLISM | PLASMA | MECHANISM | LINOLEIC-ACID | GLUCOSE | MULTIDISCIPLINARY SCIENCES | LIVER | GUT MICROBIOTA | Intestines - drug effects | Obesity - diet therapy | Molecular Weight | Xylans - pharmacology | Diet - adverse effects | Cholesterol - blood | Body Weight - drug effects | Male | Linoleic Acids, Conjugated - metabolism | Obesity - microbiology | Metagenome - physiology | Bacterial Load - drug effects | Subcutaneous Fat - metabolism | Prevotella - physiology | Subcutaneous Fat - drug effects | Obesity - etiology | Bifidobacterium - physiology | Biomarkers - metabolism | Dietary Fats - adverse effects | Metagenome - drug effects | Mice, Inbred C57BL | Bacteroides - physiology | Insulin Resistance | Obesity - metabolism | Prebiotics | Gene Expression Regulation - drug effects | Animals | Intestines - microbiology | Xylans - chemistry | Xylans - therapeutic use | Mice | Triticum - chemistry | Microbiota (Symbiotic organisms) | Diet | Analysis | Body weight | Physiological aspects | Insulin resistance | Wheat | Fatty acids | Dysbacteriosis | Adipose tissue | Fat metabolism | Enzyme activity | Lipids | Glucose | Molecular weight | High fat diet | Proteins | Microbiota | Enzymatic activity | Rodents | Nutrients | Bacteria | Oxidation | Colon | Lipid metabolism | Supplementation | Arabinoxylans | Food | Carbohydrates | Obesity | Dietary supplements | Polymerization | Inflammation | Ecology | Metabolism | Fermentation | Gene expression | Insulin | Body weight gain | Cholesterol | Studies | Nutrition research | Correlation analysis | Laboratory animals
Journal Article
Nature, ISSN 0028-0836, 04/2017, Volume 544, Issue 7648, pp. 65 - 70
Journal Article
Science, ISSN 0036-8075, 1/2006, Volume 311, Issue 5760, pp. 535 - 538
The design of enzymes with new functions and properties has long been a goal in protein engineering. Here, we report a strategy to change the catalytic... 
Directed molecular evolution | Enzymes | Coordination polymers | Active sites | Point mutation | Amino acids | Evolution | Reports | Biochemistry | Catalytic activity | Scaffolds | BACTEROIDES-FRAGILIS | SITE | COMPLEX | ENZYME | METALLO-BETA-LACTAMASE | MECHANISM | CRYSTAL-STRUCTURE | MULTIDISCIPLINARY SCIENCES | GLYOXALASE-II | INHIBITOR | BINDING | Zinc - metabolism | Escherichia coli - drug effects | Humans | Cefotaxime - metabolism | Drug Resistance, Bacterial | Molecular Sequence Data | Substrate Specificity | Recombinant Fusion Proteins - metabolism | Protein Engineering | Catalysis | beta-Lactamases - metabolism | Binding Sites | Protein Structure, Tertiary | Amino Acid Sequence | Catalytic Domain | Protein Structure, Secondary | Models, Molecular | Directed Molecular Evolution | Iron - metabolism | Protein Folding | Point Mutation | beta-Lactamases - chemistry | Metals - metabolism | Hydrophobic and Hydrophilic Interactions | Cefotaxime - pharmacology | Protein Conformation | Thiolester Hydrolases - genetics | Thiolester Hydrolases - metabolism | Kinetics | Thiolester Hydrolases - chemistry | Evolution, Molecular | Protein engineering | Research | Analysis | Models; Molecular | Biokemi | Hydrophobicity | Protein Structure; Secondary | Metals/metabolism | Biochemistry and Molecular Biology | Research Support; Non-U.S. Gov't | Natural Sciences | beta-Lactamases/chemistry/metabolism | Thiolester Hydrolases/chemistry/genetics/metabolism | Biological Sciences | Protein Structure; Tertiary | Escherichia coli/drug effects | Cefotaxime/metabolism/pharmacology | Drug Resistance; Bacterial | Chemistry | Naturvetenskap | Biokemi och molekylärbiologi | Evolution; Molecular | Kemi | Biologiska vetenskaper | Iron/metabolism | Recombinant Fusion Proteins/metabolism | Zinc/metabolism
Journal Article
Cell Host and Microbe, ISSN 1931-3128, 07/2017, Volume 22, Issue 1, pp. 25 - 37.e6
Journal Article
Immunity, ISSN 1074-7613, 03/2019, Volume 50, Issue 3, pp. 692 - 706.e7
Idiopathic pulmonary fibrosis (IPF) is a severe form of lung fibrosis with a high mortality rate. However, the etiology of IPF remains unknown. Here, we report... 
bleomycin-induced fibrosis | lung microbiota | outer membrane vesicles | interleukin-17B | Prevotella | idiopathic pulmonary fibrosis | Bacteroides | CELLS | BIOGENESIS | IL-17 | GUT | MICROBIOME | AIRWAY INFLAMMATION | RECEPTOR | BLEOMYCIN | MECHANISMS | IMMUNOLOGY | EXPRESSION | Tumor Necrosis Factor-alpha - metabolism | Lung - microbiology | Microbiota - physiology | Cytokines - metabolism | Mice, Inbred C57BL | Idiopathic Pulmonary Fibrosis - microbiology | Idiopathic Pulmonary Fibrosis - metabolism | Prevotella - metabolism | Bacteroides - metabolism | Interleukin-17 - metabolism | Inflammation - metabolism | Animals | Bacterial Outer Membrane Proteins - metabolism | Signal Transduction - physiology | Lung - metabolism | Mice | Toll-Like Receptors - metabolism | Myeloid Differentiation Factor 88 - metabolism | Neutrophils - metabolism | Disease Models, Animal | Broadway theater | Medical colleges | Pulmonary fibrosis | Interleukins | Microbiota (Symbiotic organisms) | Mortality | Development and progression | Respiratory tract diseases | Bacteria | Children | Health aspects | Cells | Commensals | Pathogenesis | Genes | Interleukin | Helper cells | Gram-positive bacteria | Lymphocytes T | Experiments | Microbiota | Vesicles | Bleomycin | Etiology | Toll-like receptors | Tumor necrosis factor-TNF | Statistical analysis | Cytokines | Lung diseases | Membrane vesicles | Inflammation | Tumor necrosis factor-α | Gene expression | Signaling | Depletion | Lungs | Antibiotics | Fibrosis | MyD88 protein | Software
Journal Article