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1. Difference of the microbial community structure in the rhizosphere of soybean and oilseed rape based on high-throughput pyrosequencing analysis.
by Yang, Xiao Xiang and Zhang, Lei and Huang, Xiao Qin and Wu, Wen Xian and Zhou, Xi Quan and DU, Lei and Li, Huai Zhong and Liu, Yong
Ying yong sheng tai xue bao = The journal of applied ecology, ISSN 1001-9332, 07/2019, Volume 30, Issue 7, p. 2345
Clubroot, caused by the soil-borne obligate pathogen Plasmodiophora brassicae, is one of the most severe disease in cruciferous crops. Previous studies showed... 
Soybeans - growth & development | Brassica rapa - growth & development | Brassica rapa - microbiology | Rhizosphere | Microbiota | Soil Microbiology | Soybeans - microbiology | High-Throughput Nucleotide Sequencing | RNA, Ribosomal, 16S
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2. Effects of intercropping Chinese milk vetch on functional characteristics of soil microbial community in rape rhizosphere
by Zhou, Quan and Wang, Long Chang and Xing, Yi and Ma, Shu Min and Zhang, Xiao Duan and Chen, Jiao and Shi, Chao
Ying yong sheng tai xue bao = The journal of applied ecology, ISSN 1001-9332, 03/2018, Volume 29, Issue 3, p. 909
The application of green manure is facing serious problems in purple soil region of southwest China. With the aim to explore the potential application of green... 
Rhizosphere | Soil Microbiology | China | Brassica napus | Soil | Astragalus Plant | Agriculture
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3. Full Text Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement
by Zhang, Tianzhen and Hu, Yan and Jiang, Wenkai and Fang, Lei and Guan, Xueying and Chen, Jiedan and Zhang, Jinbo and Saski, Christopher A and Scheffler, Brian E and Stelly, David M and Hulse-Kemp, Amanda M and Wan, Qun and Liu, Bingliang and Liu, Chunxiao and Wang, Sen and Pan, Mengqiao and Wang, Yangkun and Wang, Dawei and Ye, Wenxue and Chang, Lijing and Zhang, Wenpan and Song, Qingxin and Kirkbride, Ryan C and Chen, Xiaoya and Dennis, Elizabeth and Llewellyn, Danny J and Peterson, Daniel G and Thaxton, Peggy and Jones, Don C and Wang, Qiong and Xu, Xiaoyang and Zhang, Hua and Wu, Huaitong and Zhou, Lei and Mei, Gaofu and Chen, Shuqi and Tian, Yue and Xiang, Dan and Li, Xinghe and Ding, Jian and Zuo, Qiyang and Tao, Linna and Liu, Yunchao and Li, Ji and Lin, Yu and Hui, Yuanyuan and Cao, Zhisheng and Cai, Caiping and Zhu, Xiefei and Jiang, Zhi and Zhou, Baoliang and Guo, Wangzhen and Li, Ruiqiang and Chen, Z Jeffrey
Nature Biotechnology, ISSN 1087-0156, 05/2015, Volume 33, Issue 5, pp. 531 - 537
Upland cotton is a model for polyploid crop domestication and transgenic improvement. Here we sequenced the allotetraploid Gossypium hirsutum L. acc. TM-1... 
GENOME SEQUENCE | CELL-WALL | EVOLUTION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BRASSICA-NAPUS | ANNOTATION | GENE-EXPRESSION | ARABIDOPSIS | PREDICTION | REVEALS | TOOL | Cotton Fiber | Tetraploidy | Plant Proteins - genetics | Base Sequence | Gossypium - genetics | Chromosome Mapping | High-Throughput Nucleotide Sequencing | Genome, Plant | Plant Proteins - biosynthesis | Sequence Analysis, DNA | Polyploidy | Nucleotide sequencing | Identification and classification | Methods | DNA sequencing | Cotton | Crops | Genomes
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4. Full Text Biochar impacts soil microbial community composition and nitrogen cycling in an acidic soil planted with rape
by Xu, Hui-Juan and Wang, Xiao-Hui and Li, Hu and Yao, Huai-Ying and Su, Jian-Qiang and Zhu, Yong-Guan
Environmental Science and Technology, ISSN 0013-936X, 08/2014, Volume 48, Issue 16, pp. 9391 - 9399
Biochar has been suggested to improve acidic soils and to mitigate greenhouse gas emissions. However, little has been done on the role of biochar in... 
ENVIRONMENTAL SCIENCES | CARBON | AMMONIA-OXIDIZING ARCHAEA | ENGINEERING, ENVIRONMENTAL | DENITRIFICATION | ACIDIFICATION | SP-NOV | DIVERSITY | BACTERIAL | CROP PRODUCTION | N2O EMISSIONS | Brassica - growth & development | Soil Microbiology - standards | Microbiota - drug effects | Fertilizers - analysis | Biomass | Charcoal - chemistry | Nitrogen Cycle | Charcoal - pharmacology | Microbiota - genetics | Nitrification | Nitrous Oxide - analysis | Soil - chemistry | Denitrification | Hydrogen-Ion Concentration
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5. Full Text The role of plant-associated bacteria in the mobilization and phytoextraction of trace elements in contaminated soils
by Sessitsch, Angela and Kuffner, Melanie and Kidd, Petra and Vangronsveld, Jaco and Wenzel, Walter W and Fallmann, Katharina and Puschenreiter, Markus
Soil Biology and Biochemistry, ISSN 0038-0717, 05/2013, Volume 60, Issue 100, pp. 182 - 194
Phytoextraction makes use of trace element-accumulating plants that concentrate the pollutants in their tissues. Pollutants can be then removed by harvesting... 
Endophytes | Rhizosphere bacteria | Plant growth promotion | Phytoextraction | Trace element mobilization | HYPERACCUMULATOR THLASPI-GOESINGENSE | TRANSGENIC CANOLA PLANTS | BRASSICA-JUNCEA | ARBUSCULAR MYCORRHIZAL FUNGI | GROWTH-PROMOTING BACTERIA | PTERIS-VITTATA L | SOIL SCIENCE | FUNGUS GLOMUS-MOSSEAE | CADMIUM-RESISTANT BACTERIA | HEAVY-METAL RESISTANCE | ZEA-MAYS L | Soils | Bacteria | Soil amendments | Analysis | Review
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6. Full Text Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea
by Parkin, Isobel A.P and Koh, Chushin and Tang, Haibao and Robinson, Stephen J and Kagale, Sateesh and Clarke, Wayne E and Town, Chris D and Nixon, John and Krishnakumar, Vivek and Bidwell, Shelby L and Denoeud, France and Belcram, Harry and Links, Matthew G and Just, Jérémy and Clarke, Carling and Bender, Tricia and Huebert, Terry and Mason, Annaliese S and Chris Pires, J and Barker, Guy and Moore, Jonathan and Walley, Peter G and Manoli, Sahana and Batley, Jacqueline and Edwards, David and Nelson, Matthew N and Wang, Xiyin and Paterson, Andrew H and King, Graham and Bancroft, Ian and Chalhoub, Boulos and Sharpe, Andrew G
Genome Biology, ISSN 1474-7596, 06/2014, Volume 15, Issue 6, pp. R77 - R77
Background: Brassica oleracea is a valuable vegetable species that has contributed to human health and nutrition for hundreds of years and comprises multiple... 
POPULATION | ARABIDOPSIS-THALIANA | NAPUS | DUPLICATIONS | EVOLUTION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | RAPA | GENETICS & HEREDITY | GENE LOSS | PLANTS | DIVERGENCE | CYTOSINE METHYLATION | Brassica - metabolism | Epigenesis, Genetic | Molecular Sequence Annotation | Transcriptome | Molecular Sequence Data | Aneuploidy | Chromosome Mapping | Genome, Plant | Sequence Analysis, DNA | DNA Methylation | Brassica - genetics | Gene Expression Regulation, Plant | Evolution, Molecular | Research
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7. Full Text Selection on soil microbiomes reveals reproducible impacts on plant function
by Panke-Buisse, Kevin and Poole, Angela C and Goodrich, Julia K and Ley, Ruth E and Kao-Kniffin, Jenny
ISME Journal, ISSN 1751-7362, 03/2015, Volume 9, Issue 4, pp. 980 - 989
Soil microorganisms found in the root zone impact plant growth and development, but the potential to harness these benefits is hampered by the sheer abundance... 
RESPONSES | DEFENSES | COMMUNITY STRUCTURE | ENVIRONMENTS | PATHOGEN | ENZYME-ACTIVITY | ECOLOGY | MICROBIOLOGY | RHIZOSPHERE MICROBIOME | ARABIDOPSIS | ECOSYSTEM | EXPRESSION | Arabidopsis - genetics | Brassica rapa - growth & development | Microbiota | Reproducibility of Results | Arabidopsis - growth & development | Soil Microbiology | Soil - chemistry | Genotype | Biomass | Flowers - growth & development | Original
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8. Full Text Bacteria with ACC deaminase can promote plant growth and help to feed the world
by Glick, Bernard R
Microbiological Research, ISSN 0944-5013, 01/2014, Volume 169, Issue 1, pp. 30 - 39
To feed all of the world's people, it is necessary to sustainably increase agricultural productivity. One way to do this is through the increased use of plant... 
Plant growth-promoting bacteria | Plant growth | Plant stress | ACC deaminase | SALINITY STRESS | MICROBIOLOGY | SALT-STRESS | PSEUDOMONAS-PUTIDA UW4 | D-CYSTEINE DESULFHYDRASE | PISUM-SATIVUM | 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID DEAMINASE | AGROBACTERIUM-TUMEFACIENS | CANOLA BRASSICA-NAPUS | TRANSGENIC CANOLA | TRANSCRIPTIONAL REGULATION | Bacteria - metabolism | Indoleacetic Acids - metabolism | Bacteria - enzymology | Plants - microbiology | Carbon-Carbon Lyases - metabolism | Plant Development - drug effects | Ethylenes - metabolism | Bacteria | Auxin | Growth | Soil microbiology | Organic acids
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9. Full Text Induction of targeted, heritable mutations in barley and Brassica oleracea using RNA-guided Cas9 nuclease
by Lawrenson, Tom and Shorinola, Oluwaseyi and Stacey, Nicola and Li, Chengdao and Østergaard, Lars and Patron, Nicola and Uauy, Cristobal and Harwood, Wendy
Genome Biology, ISSN 1474-7596, 11/2015, Volume 16, Issue 1, p. 258
Background: The RNA-guided Cas9 system represents a flexible approach for genome editing in plants. This method can create specific mutations that knock-out or... 
PM19 | Barley | Mutations | Brassica | Off-target | CRISPR/Cas9 | Breeding | Crops | Genome editing | GA4 | ARABIDOPSIS-THALIANA | SPECIFICITY | POD SHATTER | WHEAT | GENE | GENOME MODIFICATION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | CRISPR/CAS9 SYSTEM | DNA | GENETICS & HEREDITY | GENERATION | RICE | Gene Targeting | Phenotype | RNA, Guide - genetics | RNA Editing - genetics | Brassica - genetics | Genome, Plant | Mutation | Hordeum - genetics | CRISPR-Cas Systems - genetics | CRISPR | RNA editing | Phenotypes | Cloning | Genomics | Genes | Crop improvement | Genomes | T-DNA | Transgenic plants | Consortia | Mutagenesis | Nuclease | Wheat | Deoxyribonucleic acid--DNA | Research | Cas9
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10. Full Text Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation
by Agler, Matthew T and Ruhe, Jonas and Kroll, Samuel and Morhenn, Constanze and Kim, Sang-Tae and Weigel, Detlef and Kemen, Eric M
PLoS Biology, ISSN 1544-9173, 01/2016, Volume 14, Issue 1, p. e1002352
Plant-associated microorganisms have been shown to critically affect host physiology and performance, suggesting that evolution and ecology of plants and... 
ARABIDOPSIS-THALIANA | BACTERIA | EVOLUTION | BIOCHEMISTRY & MOLECULAR BIOLOGY | YEASTS | BIOLOGY | RESISTANCE | DIVERSITY | PHYLLOSPHERE | RHIZOSPHERE | VIRULENCE | REVEALS | Arabidopsis - genetics | Arabidopsis - microbiology | Endophytes - physiology | Microbiota | Oomycetes - physiology | Basidiomycota - physiology | Bacteria | Pathogens | Microorganisms | Taxonomy | Ecosystems | Funding | Metadata | Evolution | Genomes | Experiments
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11. Full Text Associative transcriptomics of traits in the polyploid crop species Brassica napus
by Harper, Andrea L and Trick, Martin and Higgins, Janet and Fraser, Fiona and Clissold, Leah and Wells, Rachel and Hattori, Chie and Werner, Peter and Bancroft, Ian
Nature Biotechnology, ISSN 1087-0156, 08/2012, Volume 30, Issue 8, pp. 798 - 802
Association genetics can quickly and efficiently delineate regions of the genome that control traits and provide markers to accelerate breeding by... 
ARABIDOPSIS-THALIANA | GENE | SEGMENTS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SEQUENCE | ARCHITECTURE | OILSEED RAPE | PATTERNS | OLERACEA | GENOME-WIDE ASSOCIATION | REVEALS | Plant Proteins - genetics | Polyploidy | Brassica napus - genetics | Genetic Markers - genetics | Transcriptome | Gene Expression Profiling - methods | Transcription Factors - genetics | Genome-Wide Association Study - methods | Genomics - methods | Quantitative Trait Loci | RNA | Physiological aspects | Rape (Plant) | Genetic aspects | Research | Single nucleotide polymorphisms | Gene expression | Biomarkers | Genomes | Genomics
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